data_2OPF # _entry.id 2OPF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OPF pdb_00002opf 10.2210/pdb2opf/pdb NDB PD0969 ? ? RCSB RCSB041423 ? ? WWPDB D_1000041423 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2EA0 . unspecified PDB 2OQ4 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OPF _pdbx_database_status.recvd_initial_deposition_date 2007-01-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Golan, G.' 1 'Zharov, D.O.' 2 'Grollman, A.P.' 3 'Shoham, G.' 4 # _citation.id primary _citation.title ;Active site plasticity of endonuclease VIII: Conformational changes compensating for different substrates and mutations of critical residues ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Golan, G.' 1 ? primary 'Zharkov, D.O.' 2 ? primary 'Grollman, A.P.' 3 ? primary 'Shoham, G.' 4 ? # _cell.entry_id 2OPF _cell.length_a 73.556 _cell.length_b 73.556 _cell.length_c 170.113 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OPF _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3'" 3629.365 1 ? ? ? ? 2 polymer syn "5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'" 3574.350 1 ? ? ? ? 3 polymer man 'Endonuclease VIII' 29728.877 1 '3.2.2.-, 4.2.99.18' R252A ? ? 4 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 6 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 7 water nat water 18.015 243 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'DNA glycosylase/AP lyase Nei, DNA-apurinic or apyrimidinic site, lyase Nei' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DT)(DT)(DC)(DA)(DT)(DC)(DC)(DT)(DG)' GGCTTCATCCTG B ? 2 polydeoxyribonucleotide no yes '(DC)(DA)(DG)(DG)(DA)(PED)(DG)(DA)(DA)(DG)(DC)(DC)' CAGGAXGAAGCC C ? 3 'polypeptide(L)' no no ;PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSAPFYWCPGCQH ; ;PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSAPFYWCPGCQH ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DT n 1 5 DT n 1 6 DC n 1 7 DA n 1 8 DT n 1 9 DC n 1 10 DC n 1 11 DT n 1 12 DG n 2 1 DC n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 DA n 2 6 PED n 2 7 DG n 2 8 DA n 2 9 DA n 2 10 DG n 2 11 DC n 2 12 DC n 3 1 PRO n 3 2 GLU n 3 3 GLY n 3 4 PRO n 3 5 GLU n 3 6 ILE n 3 7 ARG n 3 8 ARG n 3 9 ALA n 3 10 ALA n 3 11 ASP n 3 12 ASN n 3 13 LEU n 3 14 GLU n 3 15 ALA n 3 16 ALA n 3 17 ILE n 3 18 LYS n 3 19 GLY n 3 20 LYS n 3 21 PRO n 3 22 LEU n 3 23 THR n 3 24 ASP n 3 25 VAL n 3 26 TRP n 3 27 PHE n 3 28 ALA n 3 29 PHE n 3 30 PRO n 3 31 GLN n 3 32 LEU n 3 33 LYS n 3 34 THR n 3 35 TYR n 3 36 GLN n 3 37 SER n 3 38 GLN n 3 39 LEU n 3 40 ILE n 3 41 GLY n 3 42 GLN n 3 43 HIS n 3 44 VAL n 3 45 THR n 3 46 HIS n 3 47 VAL n 3 48 GLU n 3 49 THR n 3 50 ARG n 3 51 GLY n 3 52 LYS n 3 53 ALA n 3 54 LEU n 3 55 LEU n 3 56 THR n 3 57 HIS n 3 58 PHE n 3 59 SER n 3 60 ASN n 3 61 ASP n 3 62 LEU n 3 63 THR n 3 64 LEU n 3 65 TYR n 3 66 SER n 3 67 HIS n 3 68 ASN n 3 69 GLN n 3 70 LEU n 3 71 TYR n 3 72 GLY n 3 73 VAL n 3 74 TRP n 3 75 ARG n 3 76 VAL n 3 77 VAL n 3 78 ASP n 3 79 THR n 3 80 GLY n 3 81 GLU n 3 82 GLU n 3 83 PRO n 3 84 GLN n 3 85 THR n 3 86 THR n 3 87 ARG n 3 88 VAL n 3 89 LEU n 3 90 ARG n 3 91 VAL n 3 92 LYS n 3 93 LEU n 3 94 GLN n 3 95 THR n 3 96 ALA n 3 97 ASP n 3 98 LYS n 3 99 THR n 3 100 ILE n 3 101 LEU n 3 102 LEU n 3 103 TYR n 3 104 SER n 3 105 ALA n 3 106 SER n 3 107 ASP n 3 108 ILE n 3 109 GLU n 3 110 MET n 3 111 LEU n 3 112 ARG n 3 113 PRO n 3 114 GLU n 3 115 GLN n 3 116 LEU n 3 117 THR n 3 118 THR n 3 119 HIS n 3 120 PRO n 3 121 PHE n 3 122 LEU n 3 123 GLN n 3 124 ARG n 3 125 VAL n 3 126 GLY n 3 127 PRO n 3 128 ASP n 3 129 VAL n 3 130 LEU n 3 131 ASP n 3 132 PRO n 3 133 ASN n 3 134 LEU n 3 135 THR n 3 136 PRO n 3 137 GLU n 3 138 VAL n 3 139 VAL n 3 140 LYS n 3 141 GLU n 3 142 ARG n 3 143 LEU n 3 144 LEU n 3 145 SER n 3 146 PRO n 3 147 ARG n 3 148 PHE n 3 149 ARG n 3 150 ASN n 3 151 ARG n 3 152 GLN n 3 153 PHE n 3 154 ALA n 3 155 GLY n 3 156 LEU n 3 157 LEU n 3 158 LEU n 3 159 ASP n 3 160 GLN n 3 161 ALA n 3 162 PHE n 3 163 LEU n 3 164 ALA n 3 165 GLY n 3 166 LEU n 3 167 GLY n 3 168 ASN n 3 169 TYR n 3 170 LEU n 3 171 ARG n 3 172 VAL n 3 173 GLU n 3 174 ILE n 3 175 LEU n 3 176 TRP n 3 177 GLN n 3 178 VAL n 3 179 GLY n 3 180 LEU n 3 181 THR n 3 182 GLY n 3 183 ASN n 3 184 HIS n 3 185 LYS n 3 186 ALA n 3 187 LYS n 3 188 ASP n 3 189 LEU n 3 190 ASN n 3 191 ALA n 3 192 ALA n 3 193 GLN n 3 194 LEU n 3 195 ASP n 3 196 ALA n 3 197 LEU n 3 198 ALA n 3 199 HIS n 3 200 ALA n 3 201 LEU n 3 202 LEU n 3 203 GLU n 3 204 ILE n 3 205 PRO n 3 206 ARG n 3 207 PHE n 3 208 SER n 3 209 TYR n 3 210 ALA n 3 211 THR n 3 212 ARG n 3 213 GLY n 3 214 GLN n 3 215 VAL n 3 216 ASP n 3 217 GLU n 3 218 ASN n 3 219 LYS n 3 220 HIS n 3 221 HIS n 3 222 GLY n 3 223 ALA n 3 224 LEU n 3 225 PHE n 3 226 ARG n 3 227 PHE n 3 228 LYS n 3 229 VAL n 3 230 PHE n 3 231 HIS n 3 232 ARG n 3 233 ASP n 3 234 GLY n 3 235 GLU n 3 236 PRO n 3 237 CYS n 3 238 GLU n 3 239 ARG n 3 240 CYS n 3 241 GLY n 3 242 SER n 3 243 ILE n 3 244 ILE n 3 245 GLU n 3 246 LYS n 3 247 THR n 3 248 THR n 3 249 LEU n 3 250 SER n 3 251 SER n 3 252 ALA n 3 253 PRO n 3 254 PHE n 3 255 TYR n 3 256 TRP n 3 257 CYS n 3 258 PRO n 3 259 GLY n 3 260 CYS n 3 261 GLN n 3 262 HIS n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene nei _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET13A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP END8_ECOLI P50465 3 ;PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH ; 2 ? 2 PDB 2OPF 2OPF 1 ? ? ? 3 PDB 2OPF 2OPF 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OPF A 1 ? 262 ? P50465 2 ? 263 ? 1 262 2 2 2OPF B 1 ? 12 ? 2OPF 401 ? 412 ? 401 412 3 3 2OPF C 1 ? 12 ? 2OPF 422 ? 433 ? 422 433 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OPF THR A 34 ? UNP P50465 PRO 35 'SEE REMARK 999' 34 1 1 2OPF ARG A 112 ? UNP P50465 THR 113 'SEE REMARK 999' 112 2 1 2OPF ALA A 252 ? UNP P50465 ARG 253 'engineered mutation' 252 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PED non-polymer . PENTANE-3,4-DIOL-5-PHOSPHATE ;OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE ; 'C5 H13 O6 P' 200.127 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2OPF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.09 _exptl_crystal.density_percent_sol 60.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '1.8M ammonium sulfate, 0.1M sodium acetate pH 4.6-5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'ammonium sulfate' ? ? ? 1 2 1 'sodium acetate' ? ? ? 1 3 1 h2o ? ? ? 1 4 2 'ammonium sulfate' ? ? ? 1 5 2 'sodium acetate' ? ? ? 1 6 2 h2o ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2001-12-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.102 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.102 # _reflns.entry_id 2OPF _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 1.85 _reflns.number_obs 39078 _reflns.number_all 39078 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.4 _reflns.B_iso_Wilson_estimate 29.2 _reflns.pdbx_redundancy 13 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.88 _reflns_shell.percent_possible_all 96.0 _reflns_shell.Rmerge_I_obs 0.491 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2OPF _refine.ls_number_reflns_obs 36395 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1090137.80 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.41 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 89.4 _refine.ls_R_factor_obs 0.24 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24 _refine.ls_R_factor_R_free 0.267 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1831 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 40.9 _refine.aniso_B[1][1] 2.97 _refine.aniso_B[2][2] 2.97 _refine.aniso_B[3][3] -5.93 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.445119 _refine.solvent_model_param_bsol 71.1586 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2EA0 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2OPF _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.16 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.17 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2039 _refine_hist.pdbx_number_atoms_nucleic_acid 461 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 243 _refine_hist.number_atoms_total 2779 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 20.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.91 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.31 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.98 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.86 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.74 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.85 _refine_ls_shell.d_res_low 1.97 _refine_ls_shell.number_reflns_R_work 5308 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.percent_reflns_obs 84.3 _refine_ls_shell.R_factor_R_free 0.339 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 282 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna-ped.param dna-rna-ped.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 water_rep.param water.top 'X-RAY DIFFRACTION' 5 gol.param gol.top 'X-RAY DIFFRACTION' # _struct.entry_id 2OPF _struct.title ;Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (R252A) in complex with AP-site containing DNA substrate ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OPF _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'Endonuclease VIII, oxidative damage, DNA repair, base excision, covalent intermediate, reaction mechanism, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 7 ? L N N 7 ? M N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU C 2 ? LYS C 18 ? GLU A 2 LYS A 18 1 ? 17 HELX_P HELX_P2 2 PHE C 29 ? LYS C 33 ? PHE A 29 LYS A 33 5 ? 5 HELX_P HELX_P3 3 THR C 34 ? ILE C 40 ? THR A 34 ILE A 40 1 ? 7 HELX_P HELX_P4 4 ARG C 112 ? THR C 118 ? ARG A 112 THR A 118 1 ? 7 HELX_P HELX_P5 5 HIS C 119 ? VAL C 125 ? HIS A 119 VAL A 125 1 ? 7 HELX_P HELX_P6 6 THR C 135 ? SER C 145 ? THR A 135 SER A 145 1 ? 11 HELX_P HELX_P7 7 GLN C 152 ? LEU C 157 ? GLN A 152 LEU A 157 1 ? 6 HELX_P HELX_P8 8 GLY C 167 ? VAL C 178 ? GLY A 167 VAL A 178 1 ? 12 HELX_P HELX_P9 9 LYS C 185 ? LEU C 189 ? LYS A 185 LEU A 189 5 ? 5 HELX_P HELX_P10 10 ASN C 190 ? ARG C 212 ? ASN A 190 ARG A 212 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B DA 5 "O3'" ? ? ? 1_555 B PED 6 P ? ? C DA 426 C PED 427 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale one ? B PED 6 "C1'" ? ? ? 1_555 C PRO 1 N ? ? C PED 427 A PRO 1 1_555 ? ? ? ? ? ? ? 1.505 ? ? metalc1 metalc ? ? C CYS 237 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 237 A ZN 501 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc2 metalc ? ? C CYS 240 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 240 A ZN 501 1_555 ? ? ? ? ? ? ? 2.362 ? ? metalc3 metalc ? ? C CYS 257 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 257 A ZN 501 1_555 ? ? ? ? ? ? ? 2.212 ? ? metalc4 metalc ? ? C CYS 260 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 260 A ZN 501 1_555 ? ? ? ? ? ? ? 2.333 ? ? hydrog1 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? B DG 402 C DC 432 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? B DC 403 C DG 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? B DC 403 C DG 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? B DC 403 C DG 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 404 C DA 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 404 C DA 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 405 C DA 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 405 C DA 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 406 C DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 406 C DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 406 C DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 408 C DA 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 408 C DA 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 409 C DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 409 C DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 409 C DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 3 N1 ? ? B DC 410 C DG 424 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 3 O6 ? ? B DC 410 C DG 424 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 3 N2 ? ? B DC 410 C DG 424 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 411 C DA 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 411 C DA 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? B DG 412 C DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? B DG 412 C DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? B DG 412 C DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU C 22 ? PHE C 27 ? LEU A 22 PHE A 27 A 2 LEU C 89 ? THR C 95 ? LEU A 89 THR A 95 A 3 LYS C 98 ? TYR C 103 ? LYS A 98 TYR A 103 A 4 VAL C 73 ? ASP C 78 ? VAL A 73 ASP A 78 B 1 VAL C 44 ? ARG C 50 ? VAL A 44 ARG A 50 B 2 ALA C 53 ? PHE C 58 ? ALA A 53 PHE A 58 B 3 THR C 63 ? HIS C 67 ? THR A 63 HIS A 67 B 4 ASP C 107 ? LEU C 111 ? ASP A 107 LEU A 111 C 1 GLU C 245 ? LEU C 249 ? GLU A 245 LEU A 249 C 2 ALA C 252 ? TRP C 256 ? ALA A 252 TRP A 256 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP C 26 ? N TRP A 26 O LYS C 92 ? O LYS A 92 A 2 3 N ARG C 90 ? N ARG A 90 O LEU C 102 ? O LEU A 102 A 3 4 O TYR C 103 ? O TYR A 103 N VAL C 73 ? N VAL A 73 B 1 2 N GLU C 48 ? N GLU A 48 O LEU C 55 ? O LEU A 55 B 2 3 N LEU C 54 ? N LEU A 54 O SER C 66 ? O SER A 66 B 3 4 N THR C 63 ? N THR A 63 O LEU C 111 ? O LEU A 111 C 1 2 N THR C 247 ? N THR A 247 O PHE C 254 ? O PHE A 254 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC2 Software A ZN 501 ? 4 'BINDING SITE FOR RESIDUE ZN A 501' AC3 Software A SO4 601 ? 5 'BINDING SITE FOR RESIDUE SO4 A 601' AC4 Software A GOL 701 ? 7 'BINDING SITE FOR RESIDUE GOL A 701' AC5 Software C GOL 702 ? 8 'BINDING SITE FOR RESIDUE GOL C 702' AC6 Software A GOL 703 ? 6 'BINDING SITE FOR RESIDUE GOL A 703' AC7 Software A GOL 704 ? 7 'BINDING SITE FOR RESIDUE GOL A 704' AC8 Software A GOL 705 ? 2 'BINDING SITE FOR RESIDUE GOL A 705' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC2 4 CYS C 237 ? CYS A 237 . ? 1_555 ? 2 AC2 4 CYS C 240 ? CYS A 240 . ? 1_555 ? 3 AC2 4 CYS C 257 ? CYS A 257 . ? 1_555 ? 4 AC2 4 CYS C 260 ? CYS A 260 . ? 1_555 ? 5 AC3 5 ARG C 8 ? ARG A 8 . ? 1_555 ? 6 AC3 5 ASN C 12 ? ASN A 12 . ? 1_555 ? 7 AC3 5 GLY C 213 ? GLY A 213 . ? 1_555 ? 8 AC3 5 GLN C 214 ? GLN A 214 . ? 1_555 ? 9 AC3 5 HOH M . ? HOH A 1220 . ? 1_555 ? 10 AC4 7 GLN C 177 ? GLN A 177 . ? 1_555 ? 11 AC4 7 ALA C 196 ? ALA A 196 . ? 1_555 ? 12 AC4 7 ALA C 200 ? ALA A 200 . ? 1_555 ? 13 AC4 7 GLU C 203 ? GLU A 203 . ? 1_555 ? 14 AC4 7 HOH M . ? HOH A 1137 . ? 1_555 ? 15 AC4 7 HOH M . ? HOH A 1166 . ? 1_555 ? 16 AC4 7 HOH M . ? HOH A 1176 . ? 1_555 ? 17 AC5 8 DA A 7 ? DA B 407 . ? 1_555 ? 18 AC5 8 DG B 3 ? DG C 424 . ? 1_555 ? 19 AC5 8 DG B 4 ? DG C 425 . ? 1_555 ? 20 AC5 8 DA B 5 ? DA C 426 . ? 1_555 ? 21 AC5 8 HOH L . ? HOH C 1050 . ? 1_555 ? 22 AC5 8 HOH L . ? HOH C 1070 . ? 1_555 ? 23 AC5 8 HOH L . ? HOH C 1134 . ? 1_555 ? 24 AC5 8 HOH L . ? HOH C 1163 . ? 1_555 ? 25 AC6 6 ALA C 9 ? ALA A 9 . ? 1_555 ? 26 AC6 6 ASN C 12 ? ASN A 12 . ? 1_555 ? 27 AC6 6 ASN C 68 ? ASN A 68 . ? 1_555 ? 28 AC6 6 TRP C 74 ? TRP A 74 . ? 1_555 ? 29 AC6 6 HOH M . ? HOH A 1039 . ? 1_555 ? 30 AC6 6 HOH M . ? HOH A 1153 . ? 1_555 ? 31 AC7 7 ASP C 24 ? ASP A 24 . ? 1_555 ? 32 AC7 7 TRP C 26 ? TRP A 26 . ? 1_555 ? 33 AC7 7 GLN C 36 ? GLN A 36 . ? 1_555 ? 34 AC7 7 GLY C 80 ? GLY A 80 . ? 5_755 ? 35 AC7 7 GLU C 82 ? GLU A 82 . ? 5_755 ? 36 AC7 7 LYS C 92 ? LYS A 92 . ? 5_755 ? 37 AC7 7 HOH M . ? HOH A 1123 . ? 5_755 ? 38 AC8 2 ARG C 75 ? ARG A 75 . ? 1_555 ? 39 AC8 2 GLN C 84 ? GLN A 84 . ? 1_555 ? # _database_PDB_matrix.entry_id 2OPF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2OPF _atom_sites.fract_transf_matrix[1][1] 0.013595 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013595 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005878 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 401 ? ? ? B . n A 1 2 DG 2 402 402 DG GUA B . n A 1 3 DC 3 403 403 DC CYT B . n A 1 4 DT 4 404 404 DT THY B . n A 1 5 DT 5 405 405 DT THY B . n A 1 6 DC 6 406 406 DC CYT B . n A 1 7 DA 7 407 407 DA ADE B . n A 1 8 DT 8 408 408 DT THY B . n A 1 9 DC 9 409 409 DC CYT B . n A 1 10 DC 10 410 410 DC CYT B . n A 1 11 DT 11 411 411 DT THY B . n A 1 12 DG 12 412 412 DG GUA B . n B 2 1 DC 1 422 422 DC CYT C . n B 2 2 DA 2 423 423 DA ADE C . n B 2 3 DG 3 424 424 DG GUA C . n B 2 4 DG 4 425 425 DG GUA C . n B 2 5 DA 5 426 426 DA ADE C . n B 2 6 PED 6 427 427 PED PED C . n B 2 7 DG 7 428 428 DG GUA C . n B 2 8 DA 8 429 429 DA ADE C . n B 2 9 DA 9 430 430 DA ADE C . n B 2 10 DG 10 431 431 DG GUA C . n B 2 11 DC 11 432 432 DC CYT C . n B 2 12 DC 12 433 433 DC CYT C . n C 3 1 PRO 1 1 1 PRO PRO A . n C 3 2 GLU 2 2 2 GLU GLU A . n C 3 3 GLY 3 3 3 GLY GLY A . n C 3 4 PRO 4 4 4 PRO PRO A . n C 3 5 GLU 5 5 5 GLU GLU A . n C 3 6 ILE 6 6 6 ILE ILE A . n C 3 7 ARG 7 7 7 ARG ARG A . n C 3 8 ARG 8 8 8 ARG ARG A . n C 3 9 ALA 9 9 9 ALA ALA A . n C 3 10 ALA 10 10 10 ALA ALA A . n C 3 11 ASP 11 11 11 ASP ASP A . n C 3 12 ASN 12 12 12 ASN ASN A . n C 3 13 LEU 13 13 13 LEU LEU A . n C 3 14 GLU 14 14 14 GLU GLU A . n C 3 15 ALA 15 15 15 ALA ALA A . n C 3 16 ALA 16 16 16 ALA ALA A . n C 3 17 ILE 17 17 17 ILE ILE A . n C 3 18 LYS 18 18 18 LYS LYS A . n C 3 19 GLY 19 19 19 GLY GLY A . n C 3 20 LYS 20 20 20 LYS LYS A . n C 3 21 PRO 21 21 21 PRO PRO A . n C 3 22 LEU 22 22 22 LEU LEU A . n C 3 23 THR 23 23 23 THR THR A . n C 3 24 ASP 24 24 24 ASP ASP A . n C 3 25 VAL 25 25 25 VAL VAL A . n C 3 26 TRP 26 26 26 TRP TRP A . n C 3 27 PHE 27 27 27 PHE PHE A . n C 3 28 ALA 28 28 28 ALA ALA A . n C 3 29 PHE 29 29 29 PHE PHE A . n C 3 30 PRO 30 30 30 PRO PRO A . n C 3 31 GLN 31 31 31 GLN GLN A . n C 3 32 LEU 32 32 32 LEU LEU A . n C 3 33 LYS 33 33 33 LYS LYS A . n C 3 34 THR 34 34 34 THR THR A . n C 3 35 TYR 35 35 35 TYR TYR A . n C 3 36 GLN 36 36 36 GLN GLN A . n C 3 37 SER 37 37 37 SER SER A . n C 3 38 GLN 38 38 38 GLN GLN A . n C 3 39 LEU 39 39 39 LEU LEU A . n C 3 40 ILE 40 40 40 ILE ILE A . n C 3 41 GLY 41 41 41 GLY GLY A . n C 3 42 GLN 42 42 42 GLN GLN A . n C 3 43 HIS 43 43 43 HIS HIS A . n C 3 44 VAL 44 44 44 VAL VAL A . n C 3 45 THR 45 45 45 THR THR A . n C 3 46 HIS 46 46 46 HIS HIS A . n C 3 47 VAL 47 47 47 VAL VAL A . n C 3 48 GLU 48 48 48 GLU GLU A . n C 3 49 THR 49 49 49 THR THR A . n C 3 50 ARG 50 50 50 ARG ARG A . n C 3 51 GLY 51 51 51 GLY GLY A . n C 3 52 LYS 52 52 52 LYS LYS A . n C 3 53 ALA 53 53 53 ALA ALA A . n C 3 54 LEU 54 54 54 LEU LEU A . n C 3 55 LEU 55 55 55 LEU LEU A . n C 3 56 THR 56 56 56 THR THR A . n C 3 57 HIS 57 57 57 HIS HIS A . n C 3 58 PHE 58 58 58 PHE PHE A . n C 3 59 SER 59 59 59 SER SER A . n C 3 60 ASN 60 60 60 ASN ASN A . n C 3 61 ASP 61 61 61 ASP ASP A . n C 3 62 LEU 62 62 62 LEU LEU A . n C 3 63 THR 63 63 63 THR THR A . n C 3 64 LEU 64 64 64 LEU LEU A . n C 3 65 TYR 65 65 65 TYR TYR A . n C 3 66 SER 66 66 66 SER SER A . n C 3 67 HIS 67 67 67 HIS HIS A . n C 3 68 ASN 68 68 68 ASN ASN A . n C 3 69 GLN 69 69 69 GLN GLN A . n C 3 70 LEU 70 70 70 LEU LEU A . n C 3 71 TYR 71 71 71 TYR TYR A . n C 3 72 GLY 72 72 72 GLY GLY A . n C 3 73 VAL 73 73 73 VAL VAL A . n C 3 74 TRP 74 74 74 TRP TRP A . n C 3 75 ARG 75 75 75 ARG ARG A . n C 3 76 VAL 76 76 76 VAL VAL A . n C 3 77 VAL 77 77 77 VAL VAL A . n C 3 78 ASP 78 78 78 ASP ASP A . n C 3 79 THR 79 79 79 THR THR A . n C 3 80 GLY 80 80 80 GLY GLY A . n C 3 81 GLU 81 81 81 GLU GLU A . n C 3 82 GLU 82 82 82 GLU GLU A . n C 3 83 PRO 83 83 83 PRO ALA A . n C 3 84 GLN 84 84 84 GLN GLN A . n C 3 85 THR 85 85 85 THR THR A . n C 3 86 THR 86 86 86 THR THR A . n C 3 87 ARG 87 87 87 ARG ARG A . n C 3 88 VAL 88 88 88 VAL VAL A . n C 3 89 LEU 89 89 89 LEU LEU A . n C 3 90 ARG 90 90 90 ARG ARG A . n C 3 91 VAL 91 91 91 VAL VAL A . n C 3 92 LYS 92 92 92 LYS LYS A . n C 3 93 LEU 93 93 93 LEU LEU A . n C 3 94 GLN 94 94 94 GLN GLN A . n C 3 95 THR 95 95 95 THR THR A . n C 3 96 ALA 96 96 96 ALA ALA A . n C 3 97 ASP 97 97 97 ASP ASP A . n C 3 98 LYS 98 98 98 LYS LYS A . n C 3 99 THR 99 99 99 THR THR A . n C 3 100 ILE 100 100 100 ILE ILE A . n C 3 101 LEU 101 101 101 LEU LEU A . n C 3 102 LEU 102 102 102 LEU LEU A . n C 3 103 TYR 103 103 103 TYR TYR A . n C 3 104 SER 104 104 104 SER SER A . n C 3 105 ALA 105 105 105 ALA ALA A . n C 3 106 SER 106 106 106 SER SER A . n C 3 107 ASP 107 107 107 ASP ASP A . n C 3 108 ILE 108 108 108 ILE ILE A . n C 3 109 GLU 109 109 109 GLU ALA A . n C 3 110 MET 110 110 110 MET MET A . n C 3 111 LEU 111 111 111 LEU LEU A . n C 3 112 ARG 112 112 112 ARG ARG A . n C 3 113 PRO 113 113 113 PRO PRO A . n C 3 114 GLU 114 114 114 GLU ALA A . n C 3 115 GLN 115 115 115 GLN GLN A . n C 3 116 LEU 116 116 116 LEU LEU A . n C 3 117 THR 117 117 117 THR THR A . n C 3 118 THR 118 118 118 THR THR A . n C 3 119 HIS 119 119 119 HIS HIS A . n C 3 120 PRO 120 120 120 PRO PRO A . n C 3 121 PHE 121 121 121 PHE PHE A . n C 3 122 LEU 122 122 122 LEU LEU A . n C 3 123 GLN 123 123 123 GLN GLN A . n C 3 124 ARG 124 124 124 ARG ARG A . n C 3 125 VAL 125 125 125 VAL VAL A . n C 3 126 GLY 126 126 126 GLY GLY A . n C 3 127 PRO 127 127 127 PRO PRO A . n C 3 128 ASP 128 128 128 ASP ASP A . n C 3 129 VAL 129 129 129 VAL VAL A . n C 3 130 LEU 130 130 130 LEU LEU A . n C 3 131 ASP 131 131 131 ASP ASP A . n C 3 132 PRO 132 132 132 PRO PRO A . n C 3 133 ASN 133 133 133 ASN ASN A . n C 3 134 LEU 134 134 134 LEU LEU A . n C 3 135 THR 135 135 135 THR THR A . n C 3 136 PRO 136 136 136 PRO PRO A . n C 3 137 GLU 137 137 137 GLU GLU A . n C 3 138 VAL 138 138 138 VAL VAL A . n C 3 139 VAL 139 139 139 VAL VAL A . n C 3 140 LYS 140 140 140 LYS LYS A . n C 3 141 GLU 141 141 141 GLU GLU A . n C 3 142 ARG 142 142 142 ARG ARG A . n C 3 143 LEU 143 143 143 LEU LEU A . n C 3 144 LEU 144 144 144 LEU LEU A . n C 3 145 SER 145 145 145 SER SER A . n C 3 146 PRO 146 146 146 PRO PRO A . n C 3 147 ARG 147 147 147 ARG ARG A . n C 3 148 PHE 148 148 148 PHE PHE A . n C 3 149 ARG 149 149 149 ARG ARG A . n C 3 150 ASN 150 150 150 ASN ASN A . n C 3 151 ARG 151 151 151 ARG ARG A . n C 3 152 GLN 152 152 152 GLN GLN A . n C 3 153 PHE 153 153 153 PHE PHE A . n C 3 154 ALA 154 154 154 ALA ALA A . n C 3 155 GLY 155 155 155 GLY GLY A . n C 3 156 LEU 156 156 156 LEU LEU A . n C 3 157 LEU 157 157 157 LEU LEU A . n C 3 158 LEU 158 158 158 LEU LEU A . n C 3 159 ASP 159 159 159 ASP ASP A . n C 3 160 GLN 160 160 160 GLN GLN A . n C 3 161 ALA 161 161 161 ALA ALA A . n C 3 162 PHE 162 162 162 PHE PHE A . n C 3 163 LEU 163 163 163 LEU LEU A . n C 3 164 ALA 164 164 164 ALA ALA A . n C 3 165 GLY 165 165 165 GLY GLY A . n C 3 166 LEU 166 166 166 LEU LEU A . n C 3 167 GLY 167 167 167 GLY GLY A . n C 3 168 ASN 168 168 168 ASN ASN A . n C 3 169 TYR 169 169 169 TYR TYR A . n C 3 170 LEU 170 170 170 LEU LEU A . n C 3 171 ARG 171 171 171 ARG ARG A . n C 3 172 VAL 172 172 172 VAL VAL A . n C 3 173 GLU 173 173 173 GLU GLU A . n C 3 174 ILE 174 174 174 ILE ILE A . n C 3 175 LEU 175 175 175 LEU LEU A . n C 3 176 TRP 176 176 176 TRP TRP A . n C 3 177 GLN 177 177 177 GLN GLN A . n C 3 178 VAL 178 178 178 VAL VAL A . n C 3 179 GLY 179 179 179 GLY GLY A . n C 3 180 LEU 180 180 180 LEU LEU A . n C 3 181 THR 181 181 181 THR THR A . n C 3 182 GLY 182 182 182 GLY GLY A . n C 3 183 ASN 183 183 183 ASN ASN A . n C 3 184 HIS 184 184 184 HIS HIS A . n C 3 185 LYS 185 185 185 LYS LYS A . n C 3 186 ALA 186 186 186 ALA ALA A . n C 3 187 LYS 187 187 187 LYS LYS A . n C 3 188 ASP 188 188 188 ASP ASP A . n C 3 189 LEU 189 189 189 LEU LEU A . n C 3 190 ASN 190 190 190 ASN ASN A . n C 3 191 ALA 191 191 191 ALA ALA A . n C 3 192 ALA 192 192 192 ALA ALA A . n C 3 193 GLN 193 193 193 GLN GLN A . n C 3 194 LEU 194 194 194 LEU LEU A . n C 3 195 ASP 195 195 195 ASP ASP A . n C 3 196 ALA 196 196 196 ALA ALA A . n C 3 197 LEU 197 197 197 LEU LEU A . n C 3 198 ALA 198 198 198 ALA ALA A . n C 3 199 HIS 199 199 199 HIS HIS A . n C 3 200 ALA 200 200 200 ALA ALA A . n C 3 201 LEU 201 201 201 LEU LEU A . n C 3 202 LEU 202 202 202 LEU LEU A . n C 3 203 GLU 203 203 203 GLU GLU A . n C 3 204 ILE 204 204 204 ILE ILE A . n C 3 205 PRO 205 205 205 PRO PRO A . n C 3 206 ARG 206 206 206 ARG ARG A . n C 3 207 PHE 207 207 207 PHE PHE A . n C 3 208 SER 208 208 208 SER SER A . n C 3 209 TYR 209 209 209 TYR TYR A . n C 3 210 ALA 210 210 210 ALA ALA A . n C 3 211 THR 211 211 211 THR THR A . n C 3 212 ARG 212 212 212 ARG ARG A . n C 3 213 GLY 213 213 213 GLY GLY A . n C 3 214 GLN 214 214 214 GLN GLN A . n C 3 215 VAL 215 215 215 VAL VAL A . n C 3 216 ASP 216 216 216 ASP ASP A . n C 3 217 GLU 217 217 ? ? ? A . n C 3 218 ASN 218 218 ? ? ? A . n C 3 219 LYS 219 219 ? ? ? A . n C 3 220 HIS 220 220 ? ? ? A . n C 3 221 HIS 221 221 ? ? ? A . n C 3 222 GLY 222 222 ? ? ? A . n C 3 223 ALA 223 223 223 ALA ALA A . n C 3 224 LEU 224 224 224 LEU LEU A . n C 3 225 PHE 225 225 225 PHE PHE A . n C 3 226 ARG 226 226 226 ARG ARG A . n C 3 227 PHE 227 227 227 PHE PHE A . n C 3 228 LYS 228 228 228 LYS LYS A . n C 3 229 VAL 229 229 229 VAL VAL A . n C 3 230 PHE 230 230 230 PHE PHE A . n C 3 231 HIS 231 231 231 HIS HIS A . n C 3 232 ARG 232 232 232 ARG ARG A . n C 3 233 ASP 233 233 233 ASP ASP A . n C 3 234 GLY 234 234 234 GLY GLY A . n C 3 235 GLU 235 235 235 GLU GLU A . n C 3 236 PRO 236 236 236 PRO PRO A . n C 3 237 CYS 237 237 237 CYS CYS A . n C 3 238 GLU 238 238 238 GLU GLU A . n C 3 239 ARG 239 239 239 ARG ARG A . n C 3 240 CYS 240 240 240 CYS CYS A . n C 3 241 GLY 241 241 241 GLY GLY A . n C 3 242 SER 242 242 242 SER SER A . n C 3 243 ILE 243 243 243 ILE ILE A . n C 3 244 ILE 244 244 244 ILE ILE A . n C 3 245 GLU 245 245 245 GLU GLU A . n C 3 246 LYS 246 246 246 LYS LYS A . n C 3 247 THR 247 247 247 THR THR A . n C 3 248 THR 248 248 248 THR THR A . n C 3 249 LEU 249 249 249 LEU LEU A . n C 3 250 SER 250 250 250 SER SER A . n C 3 251 SER 251 251 251 SER SER A . n C 3 252 ALA 252 252 252 ALA ALA A . n C 3 253 PRO 253 253 253 PRO PRO A . n C 3 254 PHE 254 254 254 PHE PHE A . n C 3 255 TYR 255 255 255 TYR TYR A . n C 3 256 TRP 256 256 256 TRP TRP A . n C 3 257 CYS 257 257 257 CYS CYS A . n C 3 258 PRO 258 258 258 PRO PRO A . n C 3 259 GLY 259 259 259 GLY GLY A . n C 3 260 CYS 260 260 260 CYS CYS A . n C 3 261 GLN 261 261 261 GLN GLN A . n C 3 262 HIS 262 262 262 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL 1 702 702 GOL GOL C . E 5 ZN 1 501 501 ZN ZN2 A . F 6 SO4 1 601 601 SO4 SO4 A . G 4 GOL 1 701 701 GOL GOL A . H 4 GOL 1 703 703 GOL GOL A . I 4 GOL 1 704 704 GOL GOL A . J 4 GOL 1 705 705 GOL GOL A . K 7 HOH 1 1034 1034 HOH HOH B . K 7 HOH 2 1062 1062 HOH HOH B . K 7 HOH 3 1066 1066 HOH HOH B . K 7 HOH 4 1071 1071 HOH HOH B . K 7 HOH 5 1081 1081 HOH HOH B . K 7 HOH 6 1111 1111 HOH HOH B . K 7 HOH 7 1114 1114 HOH HOH B . K 7 HOH 8 1121 1121 HOH HOH B . K 7 HOH 9 1149 1149 HOH HOH B . K 7 HOH 10 1169 1169 HOH HOH B . K 7 HOH 11 1172 1172 HOH HOH B . K 7 HOH 12 1185 1185 HOH HOH B . K 7 HOH 13 1215 1215 HOH HOH B . K 7 HOH 14 1222 1222 HOH HOH B . K 7 HOH 15 1232 1232 HOH HOH B . K 7 HOH 16 1252 1252 HOH HOH B . K 7 HOH 17 1254 1254 HOH HOH B . K 7 HOH 18 1260 1260 HOH HOH B . K 7 HOH 19 1261 1261 HOH HOH B . K 7 HOH 20 1269 1269 HOH HOH B . K 7 HOH 21 1277 1277 HOH HOH B . K 7 HOH 22 1283 1283 HOH HOH B . K 7 HOH 23 1284 1284 HOH HOH B . L 7 HOH 1 1015 1015 HOH HOH C . L 7 HOH 2 1031 1031 HOH HOH C . L 7 HOH 3 1037 1037 HOH HOH C . L 7 HOH 4 1041 1041 HOH HOH C . L 7 HOH 5 1050 1050 HOH HOH C . L 7 HOH 6 1060 1060 HOH HOH C . L 7 HOH 7 1065 1065 HOH HOH C . L 7 HOH 8 1070 1070 HOH HOH C . L 7 HOH 9 1076 1076 HOH HOH C . L 7 HOH 10 1078 1078 HOH HOH C . L 7 HOH 11 1080 1080 HOH HOH C . L 7 HOH 12 1090 1090 HOH HOH C . L 7 HOH 13 1091 1091 HOH HOH C . L 7 HOH 14 1115 1115 HOH HOH C . L 7 HOH 15 1134 1134 HOH HOH C . L 7 HOH 16 1162 1162 HOH HOH C . L 7 HOH 17 1163 1163 HOH HOH C . L 7 HOH 18 1190 1190 HOH HOH C . L 7 HOH 19 1194 1194 HOH HOH C . L 7 HOH 20 1195 1195 HOH HOH C . L 7 HOH 21 1202 1202 HOH HOH C . L 7 HOH 22 1207 1207 HOH HOH C . L 7 HOH 23 1228 1228 HOH HOH C . L 7 HOH 24 1229 1229 HOH HOH C . L 7 HOH 25 1243 1243 HOH HOH C . L 7 HOH 26 1244 1244 HOH HOH C . L 7 HOH 27 1248 1248 HOH HOH C . L 7 HOH 28 1263 1263 HOH HOH C . L 7 HOH 29 1265 1265 HOH HOH C . L 7 HOH 30 1272 1272 HOH HOH C . M 7 HOH 1 1001 1001 HOH HOH A . M 7 HOH 2 1003 1003 HOH HOH A . M 7 HOH 3 1004 1004 HOH HOH A . M 7 HOH 4 1005 1005 HOH HOH A . M 7 HOH 5 1006 1006 HOH HOH A . M 7 HOH 6 1007 1007 HOH HOH A . M 7 HOH 7 1008 1008 HOH HOH A . M 7 HOH 8 1009 1009 HOH HOH A . M 7 HOH 9 1010 1010 HOH HOH A . M 7 HOH 10 1011 1011 HOH HOH A . M 7 HOH 11 1012 1012 HOH HOH A . M 7 HOH 12 1013 1013 HOH HOH A . M 7 HOH 13 1014 1014 HOH HOH A . M 7 HOH 14 1016 1016 HOH HOH A . M 7 HOH 15 1017 1017 HOH HOH A . M 7 HOH 16 1018 1018 HOH HOH A . M 7 HOH 17 1019 1019 HOH HOH A . M 7 HOH 18 1020 1020 HOH HOH A . M 7 HOH 19 1021 1021 HOH HOH A . M 7 HOH 20 1023 1023 HOH HOH A . M 7 HOH 21 1024 1024 HOH HOH A . M 7 HOH 22 1025 1025 HOH HOH A . M 7 HOH 23 1026 1026 HOH HOH A . M 7 HOH 24 1027 1027 HOH HOH A . M 7 HOH 25 1028 1028 HOH HOH A . M 7 HOH 26 1030 1030 HOH HOH A . M 7 HOH 27 1032 1032 HOH HOH A . M 7 HOH 28 1033 1033 HOH HOH A . M 7 HOH 29 1035 1035 HOH HOH A . M 7 HOH 30 1036 1036 HOH HOH A . M 7 HOH 31 1038 1038 HOH HOH A . M 7 HOH 32 1039 1039 HOH HOH A . M 7 HOH 33 1042 1042 HOH HOH A . M 7 HOH 34 1043 1043 HOH HOH A . M 7 HOH 35 1045 1045 HOH HOH A . M 7 HOH 36 1047 1047 HOH HOH A . M 7 HOH 37 1048 1048 HOH HOH A . M 7 HOH 38 1049 1049 HOH HOH A . M 7 HOH 39 1052 1052 HOH HOH A . M 7 HOH 40 1053 1053 HOH HOH A . M 7 HOH 41 1054 1054 HOH HOH A . M 7 HOH 42 1055 1055 HOH HOH A . M 7 HOH 43 1056 1056 HOH HOH A . M 7 HOH 44 1057 1057 HOH HOH A . M 7 HOH 45 1058 1058 HOH HOH A . M 7 HOH 46 1059 1059 HOH HOH A . M 7 HOH 47 1061 1061 HOH HOH A . M 7 HOH 48 1063 1063 HOH HOH A . M 7 HOH 49 1064 1064 HOH HOH A . M 7 HOH 50 1068 1068 HOH HOH A . M 7 HOH 51 1069 1069 HOH HOH A . M 7 HOH 52 1072 1072 HOH HOH A . M 7 HOH 53 1073 1073 HOH HOH A . M 7 HOH 54 1075 1075 HOH HOH A . M 7 HOH 55 1077 1077 HOH HOH A . M 7 HOH 56 1079 1079 HOH HOH A . M 7 HOH 57 1082 1082 HOH HOH A . M 7 HOH 58 1083 1083 HOH HOH A . M 7 HOH 59 1085 1085 HOH HOH A . M 7 HOH 60 1086 1086 HOH HOH A . M 7 HOH 61 1087 1087 HOH HOH A . M 7 HOH 62 1089 1089 HOH HOH A . M 7 HOH 63 1094 1094 HOH HOH A . M 7 HOH 64 1095 1095 HOH HOH A . M 7 HOH 65 1096 1096 HOH HOH A . M 7 HOH 66 1099 1099 HOH HOH A . M 7 HOH 67 1100 1100 HOH HOH A . M 7 HOH 68 1101 1101 HOH HOH A . M 7 HOH 69 1102 1102 HOH HOH A . M 7 HOH 70 1103 1103 HOH HOH A . M 7 HOH 71 1104 1104 HOH HOH A . M 7 HOH 72 1105 1105 HOH HOH A . M 7 HOH 73 1108 1108 HOH HOH A . M 7 HOH 74 1109 1109 HOH HOH A . M 7 HOH 75 1112 1112 HOH HOH A . M 7 HOH 76 1113 1113 HOH HOH A . M 7 HOH 77 1116 1116 HOH HOH A . M 7 HOH 78 1117 1117 HOH HOH A . M 7 HOH 79 1118 1118 HOH HOH A . M 7 HOH 80 1119 1119 HOH HOH A . M 7 HOH 81 1120 1120 HOH HOH A . M 7 HOH 82 1122 1122 HOH HOH A . M 7 HOH 83 1123 1123 HOH HOH A . M 7 HOH 84 1124 1124 HOH HOH A . M 7 HOH 85 1125 1125 HOH HOH A . M 7 HOH 86 1127 1127 HOH HOH A . M 7 HOH 87 1128 1128 HOH HOH A . M 7 HOH 88 1129 1129 HOH HOH A . M 7 HOH 89 1130 1130 HOH HOH A . M 7 HOH 90 1131 1131 HOH HOH A . M 7 HOH 91 1132 1132 HOH HOH A . M 7 HOH 92 1133 1133 HOH HOH A . M 7 HOH 93 1135 1135 HOH HOH A . M 7 HOH 94 1136 1136 HOH HOH A . M 7 HOH 95 1137 1137 HOH HOH A . M 7 HOH 96 1138 1138 HOH HOH A . M 7 HOH 97 1140 1140 HOH HOH A . M 7 HOH 98 1141 1141 HOH HOH A . M 7 HOH 99 1142 1142 HOH HOH A . M 7 HOH 100 1143 1143 HOH HOH A . M 7 HOH 101 1146 1146 HOH HOH A . M 7 HOH 102 1150 1150 HOH HOH A . M 7 HOH 103 1152 1152 HOH HOH A . M 7 HOH 104 1153 1153 HOH HOH A . M 7 HOH 105 1154 1154 HOH HOH A . M 7 HOH 106 1156 1156 HOH HOH A . M 7 HOH 107 1157 1157 HOH HOH A . M 7 HOH 108 1158 1158 HOH HOH A . M 7 HOH 109 1160 1160 HOH HOH A . M 7 HOH 110 1161 1161 HOH HOH A . M 7 HOH 111 1164 1164 HOH HOH A . M 7 HOH 112 1165 1165 HOH HOH A . M 7 HOH 113 1166 1166 HOH HOH A . M 7 HOH 114 1168 1168 HOH HOH A . M 7 HOH 115 1170 1170 HOH HOH A . M 7 HOH 116 1171 1171 HOH HOH A . M 7 HOH 117 1173 1173 HOH HOH A . M 7 HOH 118 1174 1174 HOH HOH A . M 7 HOH 119 1176 1176 HOH HOH A . M 7 HOH 120 1184 1184 HOH HOH A . M 7 HOH 121 1186 1186 HOH HOH A . M 7 HOH 122 1187 1187 HOH HOH A . M 7 HOH 123 1188 1188 HOH HOH A . M 7 HOH 124 1189 1189 HOH HOH A . M 7 HOH 125 1191 1191 HOH HOH A . M 7 HOH 126 1192 1192 HOH HOH A . M 7 HOH 127 1193 1193 HOH HOH A . M 7 HOH 128 1196 1196 HOH HOH A . M 7 HOH 129 1197 1197 HOH HOH A . M 7 HOH 130 1198 1198 HOH HOH A . M 7 HOH 131 1199 1199 HOH HOH A . M 7 HOH 132 1200 1200 HOH HOH A . M 7 HOH 133 1201 1201 HOH HOH A . M 7 HOH 134 1203 1203 HOH HOH A . M 7 HOH 135 1204 1204 HOH HOH A . M 7 HOH 136 1205 1205 HOH HOH A . M 7 HOH 137 1206 1206 HOH HOH A . M 7 HOH 138 1210 1210 HOH HOH A . M 7 HOH 139 1211 1211 HOH HOH A . M 7 HOH 140 1212 1212 HOH HOH A . M 7 HOH 141 1213 1213 HOH HOH A . M 7 HOH 142 1216 1216 HOH HOH A . M 7 HOH 143 1217 1217 HOH HOH A . M 7 HOH 144 1218 1218 HOH HOH A . M 7 HOH 145 1219 1219 HOH HOH A . M 7 HOH 146 1220 1220 HOH HOH A . M 7 HOH 147 1223 1223 HOH HOH A . M 7 HOH 148 1224 1224 HOH HOH A . M 7 HOH 149 1225 1225 HOH HOH A . M 7 HOH 150 1226 1226 HOH HOH A . M 7 HOH 151 1227 1227 HOH HOH A . M 7 HOH 152 1230 1230 HOH HOH A . M 7 HOH 153 1231 1231 HOH HOH A . M 7 HOH 154 1233 1233 HOH HOH A . M 7 HOH 155 1234 1234 HOH HOH A . M 7 HOH 156 1235 1235 HOH HOH A . M 7 HOH 157 1237 1237 HOH HOH A . M 7 HOH 158 1238 1238 HOH HOH A . M 7 HOH 159 1239 1239 HOH HOH A . M 7 HOH 160 1240 1240 HOH HOH A . M 7 HOH 161 1241 1241 HOH HOH A . M 7 HOH 162 1245 1245 HOH HOH A . M 7 HOH 163 1251 1251 HOH HOH A . M 7 HOH 164 1253 1253 HOH HOH A . M 7 HOH 165 1255 1255 HOH HOH A . M 7 HOH 166 1256 1256 HOH HOH A . M 7 HOH 167 1257 1257 HOH HOH A . M 7 HOH 168 1258 1258 HOH HOH A . M 7 HOH 169 1264 1264 HOH HOH A . M 7 HOH 170 1266 1266 HOH HOH A . M 7 HOH 171 1267 1267 HOH HOH A . M 7 HOH 172 1268 1268 HOH HOH A . M 7 HOH 173 1270 1270 HOH HOH A . M 7 HOH 174 1271 1271 HOH HOH A . M 7 HOH 175 1273 1273 HOH HOH A . M 7 HOH 176 1274 1274 HOH HOH A . M 7 HOH 177 1275 1275 HOH HOH A . M 7 HOH 178 1276 1276 HOH HOH A . M 7 HOH 179 1279 1279 HOH HOH A . M 7 HOH 180 1280 1280 HOH HOH A . M 7 HOH 181 1285 1285 HOH HOH A . M 7 HOH 182 1286 1286 HOH HOH A . M 7 HOH 183 1287 1287 HOH HOH A . M 7 HOH 184 1288 1288 HOH HOH A . M 7 HOH 185 1289 1289 HOH HOH A . M 7 HOH 186 1290 1290 HOH HOH A . M 7 HOH 187 1291 1291 HOH HOH A . M 7 HOH 188 1292 1292 HOH HOH A . M 7 HOH 189 1294 1294 HOH HOH A . M 7 HOH 190 1295 1295 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 237 ? A CYS 237 ? 1_555 ZN ? E ZN . ? A ZN 501 ? 1_555 SG ? C CYS 240 ? A CYS 240 ? 1_555 118.0 ? 2 SG ? C CYS 237 ? A CYS 237 ? 1_555 ZN ? E ZN . ? A ZN 501 ? 1_555 SG ? C CYS 257 ? A CYS 257 ? 1_555 108.7 ? 3 SG ? C CYS 240 ? A CYS 240 ? 1_555 ZN ? E ZN . ? A ZN 501 ? 1_555 SG ? C CYS 257 ? A CYS 257 ? 1_555 96.2 ? 4 SG ? C CYS 237 ? A CYS 237 ? 1_555 ZN ? E ZN . ? A ZN 501 ? 1_555 SG ? C CYS 260 ? A CYS 260 ? 1_555 99.8 ? 5 SG ? C CYS 240 ? A CYS 240 ? 1_555 ZN ? E ZN . ? A ZN 501 ? 1_555 SG ? C CYS 260 ? A CYS 260 ? 1_555 119.9 ? 6 SG ? C CYS 257 ? A CYS 257 ? 1_555 ZN ? E ZN . ? A ZN 501 ? 1_555 SG ? C CYS 260 ? A CYS 260 ? 1_555 114.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_conn_type 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_conn_type.id' 22 3 'Structure model' '_struct_ref_seq_dif.details' 23 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_entry_details.sequence_details 'SEQUENCING AND CRYSTALLOGRAPHY CONFIRM THE SEQUENCE AS THR A 34 AND ARG A 112.' _pdbx_entry_details.entry_id 2OPF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CG A GLU 137 ? ? 1_555 CG A GLU 137 ? ? 7_555 2.05 2 1 O C HOH 1076 ? ? 1_555 O C HOH 1076 ? ? 5_655 2.09 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 PED _pdbx_validate_rmsd_bond.auth_seq_id_1 427 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 428 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.755 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation 0.148 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C PED 427 ? ? "O3'" C PED 427 ? ? P C DG 428 ? ? 129.65 119.70 9.95 1.20 Y 2 1 "O3'" C PED 427 ? ? P C DG 428 ? ? "O5'" C DG 428 ? ? 90.72 104.00 -13.28 1.90 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 69 ? ? 47.94 -122.92 2 1 SER A 104 ? ? 66.43 -35.12 3 1 PHE A 162 ? ? -87.98 -70.42 4 1 GLN A 214 ? ? 82.76 -62.35 5 1 VAL A 215 ? ? 64.92 146.17 # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 C _pdbx_validate_polymer_linkage.auth_comp_id_1 PED _pdbx_validate_polymer_linkage.auth_seq_id_1 427 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 C _pdbx_validate_polymer_linkage.auth_comp_id_2 DG _pdbx_validate_polymer_linkage.auth_seq_id_2 428 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PRO 83 ? CG ? C PRO 83 CG 2 1 Y 1 A PRO 83 ? CD ? C PRO 83 CD 3 1 Y 1 A GLU 109 ? CG ? C GLU 109 CG 4 1 Y 1 A GLU 109 ? CD ? C GLU 109 CD 5 1 Y 1 A GLU 109 ? OE1 ? C GLU 109 OE1 6 1 Y 1 A GLU 109 ? OE2 ? C GLU 109 OE2 7 1 Y 1 A GLU 114 ? CG ? C GLU 114 CG 8 1 Y 1 A GLU 114 ? CD ? C GLU 114 CD 9 1 Y 1 A GLU 114 ? OE1 ? C GLU 114 OE1 10 1 Y 1 A GLU 114 ? OE2 ? C GLU 114 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B DG 401 ? A DG 1 2 1 Y 1 A GLU 217 ? C GLU 217 3 1 Y 1 A ASN 218 ? C ASN 218 4 1 Y 1 A LYS 219 ? C LYS 219 5 1 Y 1 A HIS 220 ? C HIS 220 6 1 Y 1 A HIS 221 ? C HIS 221 7 1 Y 1 A GLY 222 ? C GLY 222 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 GOL C1 C N N 280 GOL O1 O N N 281 GOL C2 C N N 282 GOL O2 O N N 283 GOL C3 C N N 284 GOL O3 O N N 285 GOL H11 H N N 286 GOL H12 H N N 287 GOL HO1 H N N 288 GOL H2 H N N 289 GOL HO2 H N N 290 GOL H31 H N N 291 GOL H32 H N N 292 GOL HO3 H N N 293 HIS N N N N 294 HIS CA C N S 295 HIS C C N N 296 HIS O O N N 297 HIS CB C N N 298 HIS CG C Y N 299 HIS ND1 N Y N 300 HIS CD2 C Y N 301 HIS CE1 C Y N 302 HIS NE2 N Y N 303 HIS OXT O N N 304 HIS H H N N 305 HIS H2 H N N 306 HIS HA H N N 307 HIS HB2 H N N 308 HIS HB3 H N N 309 HIS HD1 H N N 310 HIS HD2 H N N 311 HIS HE1 H N N 312 HIS HE2 H N N 313 HIS HXT H N N 314 HOH O O N N 315 HOH H1 H N N 316 HOH H2 H N N 317 ILE N N N N 318 ILE CA C N S 319 ILE C C N N 320 ILE O O N N 321 ILE CB C N S 322 ILE CG1 C N N 323 ILE CG2 C N N 324 ILE CD1 C N N 325 ILE OXT O N N 326 ILE H H N N 327 ILE H2 H N N 328 ILE HA H N N 329 ILE HB H N N 330 ILE HG12 H N N 331 ILE HG13 H N N 332 ILE HG21 H N N 333 ILE HG22 H N N 334 ILE HG23 H N N 335 ILE HD11 H N N 336 ILE HD12 H N N 337 ILE HD13 H N N 338 ILE HXT H N N 339 LEU N N N N 340 LEU CA C N S 341 LEU C C N N 342 LEU O O N N 343 LEU CB C N N 344 LEU CG C N N 345 LEU CD1 C N N 346 LEU CD2 C N N 347 LEU OXT O N N 348 LEU H H N N 349 LEU H2 H N N 350 LEU HA H N N 351 LEU HB2 H N N 352 LEU HB3 H N N 353 LEU HG H N N 354 LEU HD11 H N N 355 LEU HD12 H N N 356 LEU HD13 H N N 357 LEU HD21 H N N 358 LEU HD22 H N N 359 LEU HD23 H N N 360 LEU HXT H N N 361 LYS N N N N 362 LYS CA C N S 363 LYS C C N N 364 LYS O O N N 365 LYS CB C N N 366 LYS CG C N N 367 LYS CD C N N 368 LYS CE C N N 369 LYS NZ N N N 370 LYS OXT O N N 371 LYS H H N N 372 LYS H2 H N N 373 LYS HA H N N 374 LYS HB2 H N N 375 LYS HB3 H N N 376 LYS HG2 H N N 377 LYS HG3 H N N 378 LYS HD2 H N N 379 LYS HD3 H N N 380 LYS HE2 H N N 381 LYS HE3 H N N 382 LYS HZ1 H N N 383 LYS HZ2 H N N 384 LYS HZ3 H N N 385 LYS HXT H N N 386 MET N N N N 387 MET CA C N S 388 MET C C N N 389 MET O O N N 390 MET CB C N N 391 MET CG C N N 392 MET SD S N N 393 MET CE C N N 394 MET OXT O N N 395 MET H H N N 396 MET H2 H N N 397 MET HA H N N 398 MET HB2 H N N 399 MET HB3 H N N 400 MET HG2 H N N 401 MET HG3 H N N 402 MET HE1 H N N 403 MET HE2 H N N 404 MET HE3 H N N 405 MET HXT H N N 406 PED P P N N 407 PED O1P O N N 408 PED O2P O N N 409 PED O3P O N N 410 PED "O5'" O N N 411 PED "C2'" C N N 412 PED "C5'" C N N 413 PED "C4'" C N R 414 PED "O4'" O N N 415 PED "C3'" C N S 416 PED "C1'" C N N 417 PED "O3'" O N N 418 PED HOP2 H N N 419 PED HOP3 H N N 420 PED "H2'1" H N N 421 PED "H2'2" H N N 422 PED "H5'1" H N N 423 PED "H5'2" H N N 424 PED "H4'1" H N N 425 PED "HO'4" H N N 426 PED "H3'" H N N 427 PED "H1'1" H N N 428 PED "H1'2" H N N 429 PED "H1'3" H N N 430 PED H3T H N N 431 PHE N N N N 432 PHE CA C N S 433 PHE C C N N 434 PHE O O N N 435 PHE CB C N N 436 PHE CG C Y N 437 PHE CD1 C Y N 438 PHE CD2 C Y N 439 PHE CE1 C Y N 440 PHE CE2 C Y N 441 PHE CZ C Y N 442 PHE OXT O N N 443 PHE H H N N 444 PHE H2 H N N 445 PHE HA H N N 446 PHE HB2 H N N 447 PHE HB3 H N N 448 PHE HD1 H N N 449 PHE HD2 H N N 450 PHE HE1 H N N 451 PHE HE2 H N N 452 PHE HZ H N N 453 PHE HXT H N N 454 PRO N N N N 455 PRO CA C N S 456 PRO C C N N 457 PRO O O N N 458 PRO CB C N N 459 PRO CG C N N 460 PRO CD C N N 461 PRO OXT O N N 462 PRO H H N N 463 PRO HA H N N 464 PRO HB2 H N N 465 PRO HB3 H N N 466 PRO HG2 H N N 467 PRO HG3 H N N 468 PRO HD2 H N N 469 PRO HD3 H N N 470 PRO HXT H N N 471 SER N N N N 472 SER CA C N S 473 SER C C N N 474 SER O O N N 475 SER CB C N N 476 SER OG O N N 477 SER OXT O N N 478 SER H H N N 479 SER H2 H N N 480 SER HA H N N 481 SER HB2 H N N 482 SER HB3 H N N 483 SER HG H N N 484 SER HXT H N N 485 SO4 S S N N 486 SO4 O1 O N N 487 SO4 O2 O N N 488 SO4 O3 O N N 489 SO4 O4 O N N 490 THR N N N N 491 THR CA C N S 492 THR C C N N 493 THR O O N N 494 THR CB C N R 495 THR OG1 O N N 496 THR CG2 C N N 497 THR OXT O N N 498 THR H H N N 499 THR H2 H N N 500 THR HA H N N 501 THR HB H N N 502 THR HG1 H N N 503 THR HG21 H N N 504 THR HG22 H N N 505 THR HG23 H N N 506 THR HXT H N N 507 TRP N N N N 508 TRP CA C N S 509 TRP C C N N 510 TRP O O N N 511 TRP CB C N N 512 TRP CG C Y N 513 TRP CD1 C Y N 514 TRP CD2 C Y N 515 TRP NE1 N Y N 516 TRP CE2 C Y N 517 TRP CE3 C Y N 518 TRP CZ2 C Y N 519 TRP CZ3 C Y N 520 TRP CH2 C Y N 521 TRP OXT O N N 522 TRP H H N N 523 TRP H2 H N N 524 TRP HA H N N 525 TRP HB2 H N N 526 TRP HB3 H N N 527 TRP HD1 H N N 528 TRP HE1 H N N 529 TRP HE3 H N N 530 TRP HZ2 H N N 531 TRP HZ3 H N N 532 TRP HH2 H N N 533 TRP HXT H N N 534 TYR N N N N 535 TYR CA C N S 536 TYR C C N N 537 TYR O O N N 538 TYR CB C N N 539 TYR CG C Y N 540 TYR CD1 C Y N 541 TYR CD2 C Y N 542 TYR CE1 C Y N 543 TYR CE2 C Y N 544 TYR CZ C Y N 545 TYR OH O N N 546 TYR OXT O N N 547 TYR H H N N 548 TYR H2 H N N 549 TYR HA H N N 550 TYR HB2 H N N 551 TYR HB3 H N N 552 TYR HD1 H N N 553 TYR HD2 H N N 554 TYR HE1 H N N 555 TYR HE2 H N N 556 TYR HH H N N 557 TYR HXT H N N 558 VAL N N N N 559 VAL CA C N S 560 VAL C C N N 561 VAL O O N N 562 VAL CB C N N 563 VAL CG1 C N N 564 VAL CG2 C N N 565 VAL OXT O N N 566 VAL H H N N 567 VAL H2 H N N 568 VAL HA H N N 569 VAL HB H N N 570 VAL HG11 H N N 571 VAL HG12 H N N 572 VAL HG13 H N N 573 VAL HG21 H N N 574 VAL HG22 H N N 575 VAL HG23 H N N 576 VAL HXT H N N 577 ZN ZN ZN N N 578 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 GOL C1 O1 sing N N 278 GOL C1 C2 sing N N 279 GOL C1 H11 sing N N 280 GOL C1 H12 sing N N 281 GOL O1 HO1 sing N N 282 GOL C2 O2 sing N N 283 GOL C2 C3 sing N N 284 GOL C2 H2 sing N N 285 GOL O2 HO2 sing N N 286 GOL C3 O3 sing N N 287 GOL C3 H31 sing N N 288 GOL C3 H32 sing N N 289 GOL O3 HO3 sing N N 290 HIS N CA sing N N 291 HIS N H sing N N 292 HIS N H2 sing N N 293 HIS CA C sing N N 294 HIS CA CB sing N N 295 HIS CA HA sing N N 296 HIS C O doub N N 297 HIS C OXT sing N N 298 HIS CB CG sing N N 299 HIS CB HB2 sing N N 300 HIS CB HB3 sing N N 301 HIS CG ND1 sing Y N 302 HIS CG CD2 doub Y N 303 HIS ND1 CE1 doub Y N 304 HIS ND1 HD1 sing N N 305 HIS CD2 NE2 sing Y N 306 HIS CD2 HD2 sing N N 307 HIS CE1 NE2 sing Y N 308 HIS CE1 HE1 sing N N 309 HIS NE2 HE2 sing N N 310 HIS OXT HXT sing N N 311 HOH O H1 sing N N 312 HOH O H2 sing N N 313 ILE N CA sing N N 314 ILE N H sing N N 315 ILE N H2 sing N N 316 ILE CA C sing N N 317 ILE CA CB sing N N 318 ILE CA HA sing N N 319 ILE C O doub N N 320 ILE C OXT sing N N 321 ILE CB CG1 sing N N 322 ILE CB CG2 sing N N 323 ILE CB HB sing N N 324 ILE CG1 CD1 sing N N 325 ILE CG1 HG12 sing N N 326 ILE CG1 HG13 sing N N 327 ILE CG2 HG21 sing N N 328 ILE CG2 HG22 sing N N 329 ILE CG2 HG23 sing N N 330 ILE CD1 HD11 sing N N 331 ILE CD1 HD12 sing N N 332 ILE CD1 HD13 sing N N 333 ILE OXT HXT sing N N 334 LEU N CA sing N N 335 LEU N H sing N N 336 LEU N H2 sing N N 337 LEU CA C sing N N 338 LEU CA CB sing N N 339 LEU CA HA sing N N 340 LEU C O doub N N 341 LEU C OXT sing N N 342 LEU CB CG sing N N 343 LEU CB HB2 sing N N 344 LEU CB HB3 sing N N 345 LEU CG CD1 sing N N 346 LEU CG CD2 sing N N 347 LEU CG HG sing N N 348 LEU CD1 HD11 sing N N 349 LEU CD1 HD12 sing N N 350 LEU CD1 HD13 sing N N 351 LEU CD2 HD21 sing N N 352 LEU CD2 HD22 sing N N 353 LEU CD2 HD23 sing N N 354 LEU OXT HXT sing N N 355 LYS N CA sing N N 356 LYS N H sing N N 357 LYS N H2 sing N N 358 LYS CA C sing N N 359 LYS CA CB sing N N 360 LYS CA HA sing N N 361 LYS C O doub N N 362 LYS C OXT sing N N 363 LYS CB CG sing N N 364 LYS CB HB2 sing N N 365 LYS CB HB3 sing N N 366 LYS CG CD sing N N 367 LYS CG HG2 sing N N 368 LYS CG HG3 sing N N 369 LYS CD CE sing N N 370 LYS CD HD2 sing N N 371 LYS CD HD3 sing N N 372 LYS CE NZ sing N N 373 LYS CE HE2 sing N N 374 LYS CE HE3 sing N N 375 LYS NZ HZ1 sing N N 376 LYS NZ HZ2 sing N N 377 LYS NZ HZ3 sing N N 378 LYS OXT HXT sing N N 379 MET N CA sing N N 380 MET N H sing N N 381 MET N H2 sing N N 382 MET CA C sing N N 383 MET CA CB sing N N 384 MET CA HA sing N N 385 MET C O doub N N 386 MET C OXT sing N N 387 MET CB CG sing N N 388 MET CB HB2 sing N N 389 MET CB HB3 sing N N 390 MET CG SD sing N N 391 MET CG HG2 sing N N 392 MET CG HG3 sing N N 393 MET SD CE sing N N 394 MET CE HE1 sing N N 395 MET CE HE2 sing N N 396 MET CE HE3 sing N N 397 MET OXT HXT sing N N 398 PED P O1P doub N N 399 PED P O2P sing N N 400 PED P O3P sing N N 401 PED P "O5'" sing N N 402 PED O2P HOP2 sing N N 403 PED O3P HOP3 sing N N 404 PED "O5'" "C5'" sing N N 405 PED "C2'" "C3'" sing N N 406 PED "C2'" "C1'" sing N N 407 PED "C2'" "H2'1" sing N N 408 PED "C2'" "H2'2" sing N N 409 PED "C5'" "C4'" sing N N 410 PED "C5'" "H5'1" sing N N 411 PED "C5'" "H5'2" sing N N 412 PED "C4'" "O4'" sing N N 413 PED "C4'" "C3'" sing N N 414 PED "C4'" "H4'1" sing N N 415 PED "O4'" "HO'4" sing N N 416 PED "C3'" "O3'" sing N N 417 PED "C3'" "H3'" sing N N 418 PED "C1'" "H1'1" sing N N 419 PED "C1'" "H1'2" sing N N 420 PED "C1'" "H1'3" sing N N 421 PED "O3'" H3T sing N N 422 PHE N CA sing N N 423 PHE N H sing N N 424 PHE N H2 sing N N 425 PHE CA C sing N N 426 PHE CA CB sing N N 427 PHE CA HA sing N N 428 PHE C O doub N N 429 PHE C OXT sing N N 430 PHE CB CG sing N N 431 PHE CB HB2 sing N N 432 PHE CB HB3 sing N N 433 PHE CG CD1 doub Y N 434 PHE CG CD2 sing Y N 435 PHE CD1 CE1 sing Y N 436 PHE CD1 HD1 sing N N 437 PHE CD2 CE2 doub Y N 438 PHE CD2 HD2 sing N N 439 PHE CE1 CZ doub Y N 440 PHE CE1 HE1 sing N N 441 PHE CE2 CZ sing Y N 442 PHE CE2 HE2 sing N N 443 PHE CZ HZ sing N N 444 PHE OXT HXT sing N N 445 PRO N CA sing N N 446 PRO N CD sing N N 447 PRO N H sing N N 448 PRO CA C sing N N 449 PRO CA CB sing N N 450 PRO CA HA sing N N 451 PRO C O doub N N 452 PRO C OXT sing N N 453 PRO CB CG sing N N 454 PRO CB HB2 sing N N 455 PRO CB HB3 sing N N 456 PRO CG CD sing N N 457 PRO CG HG2 sing N N 458 PRO CG HG3 sing N N 459 PRO CD HD2 sing N N 460 PRO CD HD3 sing N N 461 PRO OXT HXT sing N N 462 SER N CA sing N N 463 SER N H sing N N 464 SER N H2 sing N N 465 SER CA C sing N N 466 SER CA CB sing N N 467 SER CA HA sing N N 468 SER C O doub N N 469 SER C OXT sing N N 470 SER CB OG sing N N 471 SER CB HB2 sing N N 472 SER CB HB3 sing N N 473 SER OG HG sing N N 474 SER OXT HXT sing N N 475 SO4 S O1 doub N N 476 SO4 S O2 doub N N 477 SO4 S O3 sing N N 478 SO4 S O4 sing N N 479 THR N CA sing N N 480 THR N H sing N N 481 THR N H2 sing N N 482 THR CA C sing N N 483 THR CA CB sing N N 484 THR CA HA sing N N 485 THR C O doub N N 486 THR C OXT sing N N 487 THR CB OG1 sing N N 488 THR CB CG2 sing N N 489 THR CB HB sing N N 490 THR OG1 HG1 sing N N 491 THR CG2 HG21 sing N N 492 THR CG2 HG22 sing N N 493 THR CG2 HG23 sing N N 494 THR OXT HXT sing N N 495 TRP N CA sing N N 496 TRP N H sing N N 497 TRP N H2 sing N N 498 TRP CA C sing N N 499 TRP CA CB sing N N 500 TRP CA HA sing N N 501 TRP C O doub N N 502 TRP C OXT sing N N 503 TRP CB CG sing N N 504 TRP CB HB2 sing N N 505 TRP CB HB3 sing N N 506 TRP CG CD1 doub Y N 507 TRP CG CD2 sing Y N 508 TRP CD1 NE1 sing Y N 509 TRP CD1 HD1 sing N N 510 TRP CD2 CE2 doub Y N 511 TRP CD2 CE3 sing Y N 512 TRP NE1 CE2 sing Y N 513 TRP NE1 HE1 sing N N 514 TRP CE2 CZ2 sing Y N 515 TRP CE3 CZ3 doub Y N 516 TRP CE3 HE3 sing N N 517 TRP CZ2 CH2 doub Y N 518 TRP CZ2 HZ2 sing N N 519 TRP CZ3 CH2 sing Y N 520 TRP CZ3 HZ3 sing N N 521 TRP CH2 HH2 sing N N 522 TRP OXT HXT sing N N 523 TYR N CA sing N N 524 TYR N H sing N N 525 TYR N H2 sing N N 526 TYR CA C sing N N 527 TYR CA CB sing N N 528 TYR CA HA sing N N 529 TYR C O doub N N 530 TYR C OXT sing N N 531 TYR CB CG sing N N 532 TYR CB HB2 sing N N 533 TYR CB HB3 sing N N 534 TYR CG CD1 doub Y N 535 TYR CG CD2 sing Y N 536 TYR CD1 CE1 sing Y N 537 TYR CD1 HD1 sing N N 538 TYR CD2 CE2 doub Y N 539 TYR CD2 HD2 sing N N 540 TYR CE1 CZ doub Y N 541 TYR CE1 HE1 sing N N 542 TYR CE2 CZ sing Y N 543 TYR CE2 HE2 sing N N 544 TYR CZ OH sing N N 545 TYR OH HH sing N N 546 TYR OXT HXT sing N N 547 VAL N CA sing N N 548 VAL N H sing N N 549 VAL N H2 sing N N 550 VAL CA C sing N N 551 VAL CA CB sing N N 552 VAL CA HA sing N N 553 VAL C O doub N N 554 VAL C OXT sing N N 555 VAL CB CG1 sing N N 556 VAL CB CG2 sing N N 557 VAL CB HB sing N N 558 VAL CG1 HG11 sing N N 559 VAL CG1 HG12 sing N N 560 VAL CG1 HG13 sing N N 561 VAL CG2 HG21 sing N N 562 VAL CG2 HG22 sing N N 563 VAL CG2 HG23 sing N N 564 VAL OXT HXT sing N N 565 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2OPF 'double helix' 2OPF 'b-form double helix' 2OPF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 11 1_555 2.301 0.328 -0.877 3.912 -11.723 -38.907 1 B_DG402:DC432_C B 402 ? C 432 ? ? ? 1 A DC 3 1_555 B DG 10 1_555 -0.064 -0.093 -0.003 12.660 -17.985 -0.053 2 B_DC403:DG431_C B 403 ? C 431 ? 19 1 1 A DT 4 1_555 B DA 9 1_555 0.113 -0.023 0.219 -5.523 -19.999 2.313 3 B_DT404:DA430_C B 404 ? C 430 ? 20 1 1 A DT 5 1_555 B DA 8 1_555 -0.208 -0.149 0.135 -1.522 -19.072 -1.482 4 B_DT405:DA429_C B 405 ? C 429 ? 20 1 1 A DC 6 1_555 B DG 7 1_555 0.239 -0.114 0.010 -11.200 -1.871 0.097 5 B_DC406:DG428_C B 406 ? C 428 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.102 -0.089 0.048 -5.369 -10.642 1.594 6 B_DT408:DA426_C B 408 ? C 426 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.352 -0.133 -0.276 3.404 -13.712 0.609 7 B_DC409:DG425_C B 409 ? C 425 ? 19 1 1 A DC 10 1_555 B DG 3 1_555 -0.280 -0.040 0.103 -19.316 -8.000 -1.426 8 B_DC410:DG424_C B 410 ? C 424 ? 19 1 1 A DT 11 1_555 B DA 2 1_555 1.118 -0.066 0.225 -6.647 -14.642 6.896 9 B_DT411:DA423_C B 411 ? C 423 ? 20 1 1 A DG 12 1_555 B DC 1 1_555 -0.420 -0.157 -0.259 -8.255 -4.402 5.359 10 B_DG412:DC422_C B 412 ? C 422 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.927 -0.484 2.944 -6.389 9.634 19.093 -4.233 -4.373 2.055 26.166 17.352 22.292 1 BB_DG402DC403:DG431DC432_CC B 402 ? C 432 ? B 403 ? C 431 ? 1 A DC 3 1_555 B DG 10 1_555 A DT 4 1_555 B DA 9 1_555 0.074 -0.524 3.650 0.725 2.002 37.335 -1.110 -0.010 3.619 3.124 -1.131 37.394 2 BB_DC403DT404:DA430DG431_CC B 403 ? C 431 ? B 404 ? C 430 ? 1 A DT 4 1_555 B DA 9 1_555 A DT 5 1_555 B DA 8 1_555 0.041 -0.251 3.039 -2.279 -1.446 38.846 -0.213 -0.319 3.039 -2.171 3.422 38.936 3 BB_DT404DT405:DA429DA430_CC B 404 ? C 430 ? B 405 ? C 429 ? 1 A DT 5 1_555 B DA 8 1_555 A DC 6 1_555 B DG 7 1_555 -0.288 -0.513 3.538 -0.083 -0.741 34.472 -0.742 0.471 3.548 -1.251 0.140 34.480 4 BB_DT405DC406:DG428DA429_CC B 405 ? C 429 ? B 406 ? C 428 ? 1 A DC 6 1_555 B DG 7 1_555 A DT 8 1_555 B DA 5 1_555 -0.588 -0.200 6.626 4.869 35.168 44.977 -4.250 1.178 5.170 39.551 -5.476 56.724 5 BB_DC406DT408:DA426DG428_CC B 406 ? C 428 ? B 408 ? C 426 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.269 0.216 3.030 2.521 3.856 36.054 -0.155 -0.104 3.047 6.198 -4.052 36.338 6 BB_DT408DC409:DG425DA426_CC B 408 ? C 426 ? B 409 ? C 425 ? 1 A DC 9 1_555 B DG 4 1_555 A DC 10 1_555 B DG 3 1_555 0.472 -0.232 3.641 2.257 3.691 39.731 -0.812 -0.402 3.626 5.412 -3.309 39.957 7 BB_DC409DC410:DG424DG425_CC B 409 ? C 425 ? B 410 ? C 424 ? 1 A DC 10 1_555 B DG 3 1_555 A DT 11 1_555 B DA 2 1_555 0.143 0.341 3.185 0.108 2.007 38.297 0.274 -0.205 3.199 3.056 -0.165 38.348 8 BB_DC410DT411:DA423DG424_CC B 410 ? C 424 ? B 411 ? C 423 ? 1 A DT 11 1_555 B DA 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.140 1.295 3.241 2.628 3.242 33.886 1.689 0.658 3.327 5.535 -4.488 34.135 9 BB_DT411DG412:DC422DA423_CC B 411 ? C 423 ? B 412 ? C 422 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 GLYCEROL GOL 5 'ZINC ION' ZN 6 'SULFATE ION' SO4 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2EA0 _pdbx_initial_refinement_model.details ? #