HEADER TRANSFERASE 31-JAN-07 2OQ3 TITLE SOLUTION STRUCTURE OF THE MANNITOL- SPECIFIC CRYPTIC TITLE 2 PHOSPHOTRANSFERASE ENZYME IIA CMTB FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNITOL-SPECIFIC CRYPTIC PHOSPHOTRANSFERASE ENZYME IIA COMPND 3 COMPONENT; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PTS SYSTEM MANNITOL-SPECIFIC EIIA COMPONENT, EIIA-MTL, EIII- COMPND 6 MTL; COMPND 7 EC: 2.7.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CMTB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A(+) KEYWDS MANNITOL, PHOSPHOTRANSFERASE, ESCHERICHIA COLI, SOLUTION STRUCTURE, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR C.JIN,C.YU REVDAT 5 27-DEC-23 2OQ3 1 REMARK REVDAT 4 16-MAR-22 2OQ3 1 REMARK SEQADV REVDAT 3 24-FEB-09 2OQ3 1 VERSN REVDAT 2 16-OCT-07 2OQ3 1 JRNL REVDAT 1 25-SEP-07 2OQ3 0 JRNL AUTH C.YU,Y.LI,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURE OF THE CRYPTIC MANNITOL-SPECIFIC JRNL TITL 2 PHOSPHOTRANSFERASE ENZYME IIA CMTB FROM ESCHERICHIA COLI JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 362 1001 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17803963 JRNL DOI 10.1016/J.BBRC.2007.08.102 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, AMBER 7.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH, REMARK 3 WEINER,KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OQ3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041447. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM CMTB; 30MM PBS; 30MM NACL; REMARK 210 20MM DTT BUFFER; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, NMRVIEW 5, CYANA REMARK 210 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-21 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 TYR A 89 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 7 ARG A 2 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 7 TYR A 89 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 15 MET A 29 CA - CB - CG ANGL. DEV. = 10.2 DEGREES REMARK 500 19 ARG A 146 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 9 -65.93 -174.33 REMARK 500 1 ASN A 53 -57.39 -140.62 REMARK 500 2 GLU A 9 -77.02 -161.62 REMARK 500 2 SER A 10 13.62 -68.61 REMARK 500 2 ASN A 53 -51.05 -150.25 REMARK 500 2 HIS A 67 153.44 174.15 REMARK 500 2 LEU A 75 -33.50 -131.32 REMARK 500 2 LEU A 121 -71.21 -96.82 REMARK 500 3 GLU A 9 -87.02 -165.97 REMARK 500 3 SER A 10 8.76 -67.87 REMARK 500 3 ASN A 53 -56.46 -138.62 REMARK 500 3 PRO A 66 -91.21 -58.76 REMARK 500 3 HIS A 67 178.18 47.78 REMARK 500 3 LEU A 121 -60.81 -108.03 REMARK 500 4 GLU A 9 -93.34 -157.88 REMARK 500 4 SER A 10 13.43 -68.52 REMARK 500 4 ASN A 53 -54.02 -146.41 REMARK 500 4 LEU A 121 -63.29 -106.54 REMARK 500 5 PRO A 8 -75.07 -42.07 REMARK 500 5 GLU A 9 -76.69 -162.09 REMARK 500 5 SER A 10 6.35 -66.86 REMARK 500 5 LEU A 75 -30.57 -130.34 REMARK 500 6 ASN A 53 -44.96 -147.19 REMARK 500 6 PRO A 55 127.54 -37.11 REMARK 500 6 LEU A 75 -31.86 -131.65 REMARK 500 6 LEU A 121 -71.92 -95.04 REMARK 500 7 GLU A 9 -77.68 -158.94 REMARK 500 7 SER A 10 10.86 -69.23 REMARK 500 7 HIS A 67 153.70 179.93 REMARK 500 7 LEU A 121 -60.71 -106.59 REMARK 500 8 PRO A 8 -173.22 -60.69 REMARK 500 8 ASN A 53 -9.56 -142.53 REMARK 500 8 HIS A 67 157.52 175.60 REMARK 500 8 LEU A 121 -62.22 -101.98 REMARK 500 9 PRO A 8 -70.53 -62.05 REMARK 500 9 GLU A 9 -71.90 -163.15 REMARK 500 9 SER A 10 6.40 -69.86 REMARK 500 9 SER A 17 148.15 -174.33 REMARK 500 9 LEU A 121 -64.67 -103.30 REMARK 500 10 PRO A 8 -76.27 -69.44 REMARK 500 10 GLU A 9 -62.08 -166.39 REMARK 500 10 LEU A 59 -31.51 -132.02 REMARK 500 10 LEU A 75 -31.89 -131.23 REMARK 500 10 GLN A 116 0.15 -67.74 REMARK 500 11 GLU A 9 -72.98 -162.26 REMARK 500 11 SER A 10 2.60 -67.75 REMARK 500 11 SER A 17 146.61 -179.54 REMARK 500 11 ASN A 53 -52.96 -149.63 REMARK 500 11 MET A 65 58.76 -141.31 REMARK 500 11 LEU A 121 -60.91 -106.30 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 ARG A 146 0.14 SIDE CHAIN REMARK 500 9 ARG A 146 0.15 SIDE CHAIN REMARK 500 10 TYR A 6 0.07 SIDE CHAIN REMARK 500 10 PHE A 7 0.11 SIDE CHAIN REMARK 500 16 TYR A 37 0.08 SIDE CHAIN REMARK 500 16 TYR A 56 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2OQ3 A 1 147 UNP P69824 PTMA_ECOLI 1 147 SEQADV 2OQ3 GLY A -2 UNP P69824 EXPRESSION TAG SEQADV 2OQ3 SER A -1 UNP P69824 EXPRESSION TAG SEQADV 2OQ3 HIS A 0 UNP P69824 EXPRESSION TAG SEQRES 1 A 150 GLY SER HIS MET ARG LEU SER ASP TYR PHE PRO GLU SER SEQRES 2 A 150 SER ILE SER VAL ILE HIS SER ALA LYS ASP TRP GLN GLU SEQRES 3 A 150 ALA ILE ASP PHE SER MET VAL SER LEU LEU ASP LYS ASN SEQRES 4 A 150 TYR ILE SER GLU ASN TYR ILE GLN ALA ILE LYS ASP SER SEQRES 5 A 150 THR ILE ASN ASN GLY PRO TYR TYR ILE LEU ALA PRO GLY SEQRES 6 A 150 VAL ALA MET PRO HIS ALA ARG PRO GLU CYS GLY ALA LEU SEQRES 7 A 150 LYS THR GLY MET SER LEU THR LEU LEU GLU GLN GLY VAL SEQRES 8 A 150 TYR PHE PRO GLY ASN ASP GLU PRO ILE LYS LEU LEU ILE SEQRES 9 A 150 GLY LEU SER ALA ALA ASP ALA ASP SER HIS ILE GLY ALA SEQRES 10 A 150 ILE GLN ALA LEU SER GLU LEU LEU CYS GLU GLU GLU ILE SEQRES 11 A 150 LEU GLU GLN LEU LEU THR ALA SER SER GLU LYS GLN LEU SEQRES 12 A 150 ALA ASP ILE ILE SER ARG GLY HELIX 1 1 LEU A 3 PHE A 7 5 5 HELIX 2 2 ASP A 20 SER A 28 1 9 HELIX 3 3 MET A 29 ASP A 34 1 6 HELIX 4 4 SER A 39 ASN A 53 1 15 HELIX 5 5 ARG A 69 GLY A 73 5 5 HELIX 6 6 ASP A 107 CYS A 123 1 17 HELIX 7 7 GLU A 124 THR A 133 1 10 HELIX 8 8 SER A 136 ARG A 146 1 11 SHEET 1 A 5 ILE A 12 ILE A 15 0 SHEET 2 A 5 GLY A 78 VAL A 88 1 O GLU A 85 N ILE A 15 SHEET 3 A 5 ILE A 97 SER A 104 -1 O LEU A 100 N THR A 82 SHEET 4 A 5 VAL A 63 ALA A 64 1 N ALA A 64 O LEU A 99 SHEET 5 A 5 ILE A 58 ALA A 60 -1 N ALA A 60 O VAL A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1