data_2OQ4 # _entry.id 2OQ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OQ4 pdb_00002oq4 10.2210/pdb2oq4/pdb NDB PD0970 ? ? RCSB RCSB041448 ? ? WWPDB D_1000041448 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-02-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 4 'Structure model' 1 3 2023-10-25 5 'Structure model' 1 4 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_ref_seq_dif.details' 22 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 25 5 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OQ4 _pdbx_database_status.recvd_initial_deposition_date 2007-01-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2EA0 . unspecified PDB 2OPF . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Golan, G.' 1 'Zharkov, D.O.' 2 'Grollman, A.P.' 3 'Shoahm, G.' 4 # _citation.id primary _citation.title ;Active site plasticity of endonuclease VIII: Conformational changes compensating for different substrates and mutations of critical residues ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Golan, G.' 1 ? primary 'Zharkov, D.O.' 2 ? primary 'Grollman, A.P.' 3 ? primary 'Shoham, G.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*G*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3'" 3958.571 2 ? ? ? ? 2 polymer syn "5'-D(*C*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'" 3863.531 2 ? ? ? ? 3 polymer man 'Endonuclease VIII' 29814.010 2 '3.2.2.-, 4.2.99.18' E2Q ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 6 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 7 water nat water 18.015 93 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'DNA glycosylase/AP lyase Nei, DNA-apurinic or apyrimidinic site, lyase Nei' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DG)(DC)(DT)(DT)(DC)(DA)(DT)(DC)(DC)(DT)(DG)(DG)' GGCTTCATCCTGG C,E ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DG)(DG)(DA)(PED)(DG)(DA)(DA)(DG)(DC)(DC)' CCAGGAXGAAGCC D,F ? 3 'polypeptide(L)' no no ;PQGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH ; ;PQGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH ; A,B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SODIUM ION' NA 5 'ZINC ION' ZN 6 'SULFATE ION' SO4 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DT n 1 5 DT n 1 6 DC n 1 7 DA n 1 8 DT n 1 9 DC n 1 10 DC n 1 11 DT n 1 12 DG n 1 13 DG n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 PED n 2 8 DG n 2 9 DA n 2 10 DA n 2 11 DG n 2 12 DC n 2 13 DC n 3 1 PRO n 3 2 GLN n 3 3 GLY n 3 4 PRO n 3 5 GLU n 3 6 ILE n 3 7 ARG n 3 8 ARG n 3 9 ALA n 3 10 ALA n 3 11 ASP n 3 12 ASN n 3 13 LEU n 3 14 GLU n 3 15 ALA n 3 16 ALA n 3 17 ILE n 3 18 LYS n 3 19 GLY n 3 20 LYS n 3 21 PRO n 3 22 LEU n 3 23 THR n 3 24 ASP n 3 25 VAL n 3 26 TRP n 3 27 PHE n 3 28 ALA n 3 29 PHE n 3 30 PRO n 3 31 GLN n 3 32 LEU n 3 33 LYS n 3 34 THR n 3 35 TYR n 3 36 GLN n 3 37 SER n 3 38 GLN n 3 39 LEU n 3 40 ILE n 3 41 GLY n 3 42 GLN n 3 43 HIS n 3 44 VAL n 3 45 THR n 3 46 HIS n 3 47 VAL n 3 48 GLU n 3 49 THR n 3 50 ARG n 3 51 GLY n 3 52 LYS n 3 53 ALA n 3 54 LEU n 3 55 LEU n 3 56 THR n 3 57 HIS n 3 58 PHE n 3 59 SER n 3 60 ASN n 3 61 ASP n 3 62 LEU n 3 63 THR n 3 64 LEU n 3 65 TYR n 3 66 SER n 3 67 HIS n 3 68 ASN n 3 69 GLN n 3 70 LEU n 3 71 TYR n 3 72 GLY n 3 73 VAL n 3 74 TRP n 3 75 ARG n 3 76 VAL n 3 77 VAL n 3 78 ASP n 3 79 THR n 3 80 GLY n 3 81 GLU n 3 82 GLU n 3 83 PRO n 3 84 GLN n 3 85 THR n 3 86 THR n 3 87 ARG n 3 88 VAL n 3 89 LEU n 3 90 ARG n 3 91 VAL n 3 92 LYS n 3 93 LEU n 3 94 GLN n 3 95 THR n 3 96 ALA n 3 97 ASP n 3 98 LYS n 3 99 THR n 3 100 ILE n 3 101 LEU n 3 102 LEU n 3 103 TYR n 3 104 SER n 3 105 ALA n 3 106 SER n 3 107 ASP n 3 108 ILE n 3 109 GLU n 3 110 MET n 3 111 LEU n 3 112 ARG n 3 113 PRO n 3 114 GLU n 3 115 GLN n 3 116 LEU n 3 117 THR n 3 118 THR n 3 119 HIS n 3 120 PRO n 3 121 PHE n 3 122 LEU n 3 123 GLN n 3 124 ARG n 3 125 VAL n 3 126 GLY n 3 127 PRO n 3 128 ASP n 3 129 VAL n 3 130 LEU n 3 131 ASP n 3 132 PRO n 3 133 ASN n 3 134 LEU n 3 135 THR n 3 136 PRO n 3 137 GLU n 3 138 VAL n 3 139 VAL n 3 140 LYS n 3 141 GLU n 3 142 ARG n 3 143 LEU n 3 144 LEU n 3 145 SER n 3 146 PRO n 3 147 ARG n 3 148 PHE n 3 149 ARG n 3 150 ASN n 3 151 ARG n 3 152 GLN n 3 153 PHE n 3 154 ALA n 3 155 GLY n 3 156 LEU n 3 157 LEU n 3 158 LEU n 3 159 ASP n 3 160 GLN n 3 161 ALA n 3 162 PHE n 3 163 LEU n 3 164 ALA n 3 165 GLY n 3 166 LEU n 3 167 GLY n 3 168 ASN n 3 169 TYR n 3 170 LEU n 3 171 ARG n 3 172 VAL n 3 173 GLU n 3 174 ILE n 3 175 LEU n 3 176 TRP n 3 177 GLN n 3 178 VAL n 3 179 GLY n 3 180 LEU n 3 181 THR n 3 182 GLY n 3 183 ASN n 3 184 HIS n 3 185 LYS n 3 186 ALA n 3 187 LYS n 3 188 ASP n 3 189 LEU n 3 190 ASN n 3 191 ALA n 3 192 ALA n 3 193 GLN n 3 194 LEU n 3 195 ASP n 3 196 ALA n 3 197 LEU n 3 198 ALA n 3 199 HIS n 3 200 ALA n 3 201 LEU n 3 202 LEU n 3 203 GLU n 3 204 ILE n 3 205 PRO n 3 206 ARG n 3 207 PHE n 3 208 SER n 3 209 TYR n 3 210 ALA n 3 211 THR n 3 212 ARG n 3 213 GLY n 3 214 GLN n 3 215 VAL n 3 216 ASP n 3 217 GLU n 3 218 ASN n 3 219 LYS n 3 220 HIS n 3 221 HIS n 3 222 GLY n 3 223 ALA n 3 224 LEU n 3 225 PHE n 3 226 ARG n 3 227 PHE n 3 228 LYS n 3 229 VAL n 3 230 PHE n 3 231 HIS n 3 232 ARG n 3 233 ASP n 3 234 GLY n 3 235 GLU n 3 236 PRO n 3 237 CYS n 3 238 GLU n 3 239 ARG n 3 240 CYS n 3 241 GLY n 3 242 SER n 3 243 ILE n 3 244 ILE n 3 245 GLU n 3 246 LYS n 3 247 THR n 3 248 THR n 3 249 LEU n 3 250 SER n 3 251 SER n 3 252 ARG n 3 253 PRO n 3 254 PHE n 3 255 TYR n 3 256 TRP n 3 257 CYS n 3 258 PRO n 3 259 GLY n 3 260 CYS n 3 261 GLN n 3 262 HIS n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene Nei _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET13A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PED non-polymer . PENTANE-3,4-DIOL-5-PHOSPHATE ;OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE ; 'C5 H13 O6 P' 200.127 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 401 ? ? ? C . n A 1 2 DG 2 402 402 DG GUA C . n A 1 3 DC 3 403 403 DC CYT C . n A 1 4 DT 4 404 404 DT THY C . n A 1 5 DT 5 405 405 DT THY C . n A 1 6 DC 6 406 406 DC CYT C . n A 1 7 DA 7 407 407 DA ADE C . n A 1 8 DT 8 408 408 DT THY C . n A 1 9 DC 9 409 409 DC CYT C . n A 1 10 DC 10 410 410 DC CYT C . n A 1 11 DT 11 411 411 DT THY C . n A 1 12 DG 12 412 412 DG GUA C . n A 1 13 DG 13 413 ? ? ? C . n B 2 1 DC 1 421 ? ? ? D . n B 2 2 DC 2 422 422 DC CYT D . n B 2 3 DA 3 423 423 DA ADE D . n B 2 4 DG 4 424 424 DG GUA D . n B 2 5 DG 5 425 425 DG GUA D . n B 2 6 DA 6 426 426 DA ADE D . n B 2 7 PED 7 427 427 PED PED D . n B 2 8 DG 8 428 428 DG GUA D . n B 2 9 DA 9 429 429 DA ADE D . n B 2 10 DA 10 430 430 DA ADE D . n B 2 11 DG 11 431 431 DG GUA D . n B 2 12 DC 12 432 432 DC CYT D . n B 2 13 DC 13 433 433 DC CYT D . n C 1 1 DG 1 401 ? ? ? E . n C 1 2 DG 2 402 ? ? ? E . n C 1 3 DC 3 403 ? ? ? E . n C 1 4 DT 4 404 404 DT THY E . n C 1 5 DT 5 405 405 DT THY E . n C 1 6 DC 6 406 406 DC CYT E . n C 1 7 DA 7 407 407 DA ADE E . n C 1 8 DT 8 408 408 DT THY E . n C 1 9 DC 9 409 409 DC CYT E . n C 1 10 DC 10 410 410 DC CYT E . n C 1 11 DT 11 411 411 DT THY E . n C 1 12 DG 12 412 412 DG GUA E . n C 1 13 DG 13 413 ? ? ? E . n D 2 1 DC 1 421 ? ? ? F . n D 2 2 DC 2 422 422 DC CYT F . n D 2 3 DA 3 423 423 DA ADE F . n D 2 4 DG 4 424 424 DG GUA F . n D 2 5 DG 5 425 425 DG GUA F . n D 2 6 DA 6 426 426 DA ADE F . n D 2 7 PED 7 427 427 PED PED F . n D 2 8 DG 8 428 428 DG GUA F . n D 2 9 DA 9 429 429 DA ADE F . n D 2 10 DA 10 430 430 DA ADE F . n D 2 11 DG 11 431 431 DG GUA F . n D 2 12 DC 12 432 432 DC CYT F . n D 2 13 DC 13 433 ? ? ? F . n E 3 1 PRO 1 1 1 PRO PRO A . n E 3 2 GLN 2 2 2 GLN GLN A . n E 3 3 GLY 3 3 3 GLY GLY A . n E 3 4 PRO 4 4 4 PRO PRO A . n E 3 5 GLU 5 5 5 GLU GLU A . n E 3 6 ILE 6 6 6 ILE ILE A . n E 3 7 ARG 7 7 7 ARG ARG A . n E 3 8 ARG 8 8 8 ARG ARG A . n E 3 9 ALA 9 9 9 ALA ALA A . n E 3 10 ALA 10 10 10 ALA ALA A . n E 3 11 ASP 11 11 11 ASP ASP A . n E 3 12 ASN 12 12 12 ASN ASN A . n E 3 13 LEU 13 13 13 LEU LEU A . n E 3 14 GLU 14 14 14 GLU GLU A . n E 3 15 ALA 15 15 15 ALA ALA A . n E 3 16 ALA 16 16 16 ALA ALA A . n E 3 17 ILE 17 17 17 ILE ILE A . n E 3 18 LYS 18 18 18 LYS LYS A . n E 3 19 GLY 19 19 19 GLY GLY A . n E 3 20 LYS 20 20 20 LYS LYS A . n E 3 21 PRO 21 21 21 PRO PRO A . n E 3 22 LEU 22 22 22 LEU LEU A . n E 3 23 THR 23 23 23 THR THR A . n E 3 24 ASP 24 24 24 ASP ASP A . n E 3 25 VAL 25 25 25 VAL VAL A . n E 3 26 TRP 26 26 26 TRP TRP A . n E 3 27 PHE 27 27 27 PHE PHE A . n E 3 28 ALA 28 28 28 ALA ALA A . n E 3 29 PHE 29 29 29 PHE PHE A . n E 3 30 PRO 30 30 30 PRO PRO A . n E 3 31 GLN 31 31 31 GLN GLN A . n E 3 32 LEU 32 32 32 LEU LEU A . n E 3 33 LYS 33 33 33 LYS LYS A . n E 3 34 THR 34 34 34 THR THR A . n E 3 35 TYR 35 35 35 TYR TYR A . n E 3 36 GLN 36 36 36 GLN GLN A . n E 3 37 SER 37 37 37 SER SER A . n E 3 38 GLN 38 38 38 GLN GLN A . n E 3 39 LEU 39 39 39 LEU LEU A . n E 3 40 ILE 40 40 40 ILE ILE A . n E 3 41 GLY 41 41 41 GLY GLY A . n E 3 42 GLN 42 42 42 GLN GLN A . n E 3 43 HIS 43 43 43 HIS HIS A . n E 3 44 VAL 44 44 44 VAL VAL A . n E 3 45 THR 45 45 45 THR THR A . n E 3 46 HIS 46 46 46 HIS HIS A . n E 3 47 VAL 47 47 47 VAL VAL A . n E 3 48 GLU 48 48 48 GLU GLU A . n E 3 49 THR 49 49 49 THR THR A . n E 3 50 ARG 50 50 50 ARG ARG A . n E 3 51 GLY 51 51 51 GLY GLY A . n E 3 52 LYS 52 52 52 LYS LYS A . n E 3 53 ALA 53 53 53 ALA ALA A . n E 3 54 LEU 54 54 54 LEU LEU A . n E 3 55 LEU 55 55 55 LEU LEU A . n E 3 56 THR 56 56 56 THR THR A . n E 3 57 HIS 57 57 57 HIS HIS A . n E 3 58 PHE 58 58 58 PHE PHE A . n E 3 59 SER 59 59 59 SER SER A . n E 3 60 ASN 60 60 60 ASN ASN A . n E 3 61 ASP 61 61 61 ASP ASP A . n E 3 62 LEU 62 62 62 LEU LEU A . n E 3 63 THR 63 63 63 THR THR A . n E 3 64 LEU 64 64 64 LEU LEU A . n E 3 65 TYR 65 65 65 TYR TYR A . n E 3 66 SER 66 66 66 SER SER A . n E 3 67 HIS 67 67 67 HIS HIS A . n E 3 68 ASN 68 68 68 ASN ASN A . n E 3 69 GLN 69 69 69 GLN GLN A . n E 3 70 LEU 70 70 70 LEU LEU A . n E 3 71 TYR 71 71 71 TYR TYR A . n E 3 72 GLY 72 72 72 GLY GLY A . n E 3 73 VAL 73 73 73 VAL VAL A . n E 3 74 TRP 74 74 74 TRP TRP A . n E 3 75 ARG 75 75 75 ARG ARG A . n E 3 76 VAL 76 76 76 VAL VAL A . n E 3 77 VAL 77 77 77 VAL VAL A . n E 3 78 ASP 78 78 78 ASP ASP A . n E 3 79 THR 79 79 79 THR THR A . n E 3 80 GLY 80 80 80 GLY GLY A . n E 3 81 GLU 81 81 81 GLU GLU A . n E 3 82 GLU 82 82 82 GLU GLU A . n E 3 83 PRO 83 83 83 PRO PRO A . n E 3 84 GLN 84 84 84 GLN GLN A . n E 3 85 THR 85 85 85 THR THR A . n E 3 86 THR 86 86 86 THR ALA A . n E 3 87 ARG 87 87 87 ARG ARG A . n E 3 88 VAL 88 88 88 VAL VAL A . n E 3 89 LEU 89 89 89 LEU LEU A . n E 3 90 ARG 90 90 90 ARG ARG A . n E 3 91 VAL 91 91 91 VAL VAL A . n E 3 92 LYS 92 92 92 LYS LYS A . n E 3 93 LEU 93 93 93 LEU LEU A . n E 3 94 GLN 94 94 94 GLN GLN A . n E 3 95 THR 95 95 95 THR THR A . n E 3 96 ALA 96 96 96 ALA ALA A . n E 3 97 ASP 97 97 97 ASP ASP A . n E 3 98 LYS 98 98 98 LYS LYS A . n E 3 99 THR 99 99 99 THR THR A . n E 3 100 ILE 100 100 100 ILE ILE A . n E 3 101 LEU 101 101 101 LEU LEU A . n E 3 102 LEU 102 102 102 LEU LEU A . n E 3 103 TYR 103 103 103 TYR TYR A . n E 3 104 SER 104 104 104 SER SER A . n E 3 105 ALA 105 105 105 ALA ALA A . n E 3 106 SER 106 106 106 SER SER A . n E 3 107 ASP 107 107 107 ASP ASP A . n E 3 108 ILE 108 108 108 ILE ILE A . n E 3 109 GLU 109 109 109 GLU GLU A . n E 3 110 MET 110 110 110 MET MET A . n E 3 111 LEU 111 111 111 LEU LEU A . n E 3 112 ARG 112 112 112 ARG ARG A . n E 3 113 PRO 113 113 113 PRO PRO A . n E 3 114 GLU 114 114 114 GLU GLU A . n E 3 115 GLN 115 115 115 GLN GLN A . n E 3 116 LEU 116 116 116 LEU LEU A . n E 3 117 THR 117 117 117 THR THR A . n E 3 118 THR 118 118 118 THR THR A . n E 3 119 HIS 119 119 119 HIS HIS A . n E 3 120 PRO 120 120 120 PRO PRO A . n E 3 121 PHE 121 121 121 PHE PHE A . n E 3 122 LEU 122 122 122 LEU LEU A . n E 3 123 GLN 123 123 123 GLN GLN A . n E 3 124 ARG 124 124 124 ARG ARG A . n E 3 125 VAL 125 125 125 VAL VAL A . n E 3 126 GLY 126 126 126 GLY GLY A . n E 3 127 PRO 127 127 127 PRO PRO A . n E 3 128 ASP 128 128 128 ASP ASP A . n E 3 129 VAL 129 129 129 VAL VAL A . n E 3 130 LEU 130 130 130 LEU LEU A . n E 3 131 ASP 131 131 131 ASP ASP A . n E 3 132 PRO 132 132 132 PRO PRO A . n E 3 133 ASN 133 133 133 ASN ASN A . n E 3 134 LEU 134 134 134 LEU LEU A . n E 3 135 THR 135 135 135 THR THR A . n E 3 136 PRO 136 136 136 PRO PRO A . n E 3 137 GLU 137 137 137 GLU GLU A . n E 3 138 VAL 138 138 138 VAL VAL A . n E 3 139 VAL 139 139 139 VAL VAL A . n E 3 140 LYS 140 140 140 LYS LYS A . n E 3 141 GLU 141 141 141 GLU GLU A . n E 3 142 ARG 142 142 142 ARG ARG A . n E 3 143 LEU 143 143 143 LEU LEU A . n E 3 144 LEU 144 144 144 LEU LEU A . n E 3 145 SER 145 145 145 SER SER A . n E 3 146 PRO 146 146 146 PRO PRO A . n E 3 147 ARG 147 147 147 ARG ARG A . n E 3 148 PHE 148 148 148 PHE PHE A . n E 3 149 ARG 149 149 149 ARG ALA A . n E 3 150 ASN 150 150 150 ASN ASN A . n E 3 151 ARG 151 151 151 ARG ARG A . n E 3 152 GLN 152 152 152 GLN GLN A . n E 3 153 PHE 153 153 153 PHE PHE A . n E 3 154 ALA 154 154 154 ALA ALA A . n E 3 155 GLY 155 155 155 GLY GLY A . n E 3 156 LEU 156 156 156 LEU LEU A . n E 3 157 LEU 157 157 157 LEU LEU A . n E 3 158 LEU 158 158 158 LEU LEU A . n E 3 159 ASP 159 159 159 ASP ASP A . n E 3 160 GLN 160 160 160 GLN GLN A . n E 3 161 ALA 161 161 161 ALA ALA A . n E 3 162 PHE 162 162 162 PHE PHE A . n E 3 163 LEU 163 163 163 LEU LEU A . n E 3 164 ALA 164 164 164 ALA ALA A . n E 3 165 GLY 165 165 165 GLY GLY A . n E 3 166 LEU 166 166 166 LEU LEU A . n E 3 167 GLY 167 167 167 GLY GLY A . n E 3 168 ASN 168 168 168 ASN ASN A . n E 3 169 TYR 169 169 169 TYR TYR A . n E 3 170 LEU 170 170 170 LEU LEU A . n E 3 171 ARG 171 171 171 ARG ARG A . n E 3 172 VAL 172 172 172 VAL VAL A . n E 3 173 GLU 173 173 173 GLU GLU A . n E 3 174 ILE 174 174 174 ILE ILE A . n E 3 175 LEU 175 175 175 LEU LEU A . n E 3 176 TRP 176 176 176 TRP TRP A . n E 3 177 GLN 177 177 177 GLN GLN A . n E 3 178 VAL 178 178 178 VAL VAL A . n E 3 179 GLY 179 179 179 GLY GLY A . n E 3 180 LEU 180 180 180 LEU LEU A . n E 3 181 THR 181 181 181 THR THR A . n E 3 182 GLY 182 182 182 GLY GLY A . n E 3 183 ASN 183 183 183 ASN ASN A . n E 3 184 HIS 184 184 184 HIS HIS A . n E 3 185 LYS 185 185 185 LYS LYS A . n E 3 186 ALA 186 186 186 ALA ALA A . n E 3 187 LYS 187 187 187 LYS LYS A . n E 3 188 ASP 188 188 188 ASP ASP A . n E 3 189 LEU 189 189 189 LEU LEU A . n E 3 190 ASN 190 190 190 ASN ASN A . n E 3 191 ALA 191 191 191 ALA ALA A . n E 3 192 ALA 192 192 192 ALA ALA A . n E 3 193 GLN 193 193 193 GLN GLN A . n E 3 194 LEU 194 194 194 LEU LEU A . n E 3 195 ASP 195 195 195 ASP ASP A . n E 3 196 ALA 196 196 196 ALA ALA A . n E 3 197 LEU 197 197 197 LEU LEU A . n E 3 198 ALA 198 198 198 ALA ALA A . n E 3 199 HIS 199 199 199 HIS HIS A . n E 3 200 ALA 200 200 200 ALA ALA A . n E 3 201 LEU 201 201 201 LEU LEU A . n E 3 202 LEU 202 202 202 LEU LEU A . n E 3 203 GLU 203 203 203 GLU GLU A . n E 3 204 ILE 204 204 204 ILE ILE A . n E 3 205 PRO 205 205 205 PRO PRO A . n E 3 206 ARG 206 206 206 ARG ARG A . n E 3 207 PHE 207 207 207 PHE PHE A . n E 3 208 SER 208 208 208 SER SER A . n E 3 209 TYR 209 209 209 TYR TYR A . n E 3 210 ALA 210 210 210 ALA ALA A . n E 3 211 THR 211 211 211 THR THR A . n E 3 212 ARG 212 212 212 ARG ARG A . n E 3 213 GLY 213 213 213 GLY GLY A . n E 3 214 GLN 214 214 ? ? ? A . n E 3 215 VAL 215 215 ? ? ? A . n E 3 216 ASP 216 216 ? ? ? A . n E 3 217 GLU 217 217 ? ? ? A . n E 3 218 ASN 218 218 ? ? ? A . n E 3 219 LYS 219 219 ? ? ? A . n E 3 220 HIS 220 220 ? ? ? A . n E 3 221 HIS 221 221 ? ? ? A . n E 3 222 GLY 222 222 ? ? ? A . n E 3 223 ALA 223 223 ? ? ? A . n E 3 224 LEU 224 224 224 LEU LEU A . n E 3 225 PHE 225 225 225 PHE PHE A . n E 3 226 ARG 226 226 226 ARG ARG A . n E 3 227 PHE 227 227 227 PHE PHE A . n E 3 228 LYS 228 228 228 LYS LYS A . n E 3 229 VAL 229 229 229 VAL VAL A . n E 3 230 PHE 230 230 230 PHE PHE A . n E 3 231 HIS 231 231 231 HIS HIS A . n E 3 232 ARG 232 232 232 ARG ARG A . n E 3 233 ASP 233 233 233 ASP ASP A . n E 3 234 GLY 234 234 234 GLY GLY A . n E 3 235 GLU 235 235 235 GLU GLU A . n E 3 236 PRO 236 236 236 PRO PRO A . n E 3 237 CYS 237 237 237 CYS CYS A . n E 3 238 GLU 238 238 238 GLU GLU A . n E 3 239 ARG 239 239 239 ARG ARG A . n E 3 240 CYS 240 240 240 CYS CYS A . n E 3 241 GLY 241 241 241 GLY GLY A . n E 3 242 SER 242 242 242 SER SER A . n E 3 243 ILE 243 243 243 ILE ALA A . n E 3 244 ILE 244 244 244 ILE ILE A . n E 3 245 GLU 245 245 245 GLU GLU A . n E 3 246 LYS 246 246 246 LYS LYS A . n E 3 247 THR 247 247 247 THR THR A . n E 3 248 THR 248 248 248 THR THR A . n E 3 249 LEU 249 249 249 LEU LEU A . n E 3 250 SER 250 250 250 SER SER A . n E 3 251 SER 251 251 251 SER SER A . n E 3 252 ARG 252 252 252 ARG ARG A . n E 3 253 PRO 253 253 253 PRO PRO A . n E 3 254 PHE 254 254 254 PHE PHE A . n E 3 255 TYR 255 255 255 TYR TYR A . n E 3 256 TRP 256 256 256 TRP TRP A . n E 3 257 CYS 257 257 257 CYS CYS A . n E 3 258 PRO 258 258 258 PRO PRO A . n E 3 259 GLY 259 259 259 GLY GLY A . n E 3 260 CYS 260 260 260 CYS CYS A . n E 3 261 GLN 261 261 261 GLN GLN A . n E 3 262 HIS 262 262 262 HIS HIS A . n F 3 1 PRO 1 1 1 PRO PRO B . n F 3 2 GLN 2 2 2 GLN GLN B . n F 3 3 GLY 3 3 3 GLY GLY B . n F 3 4 PRO 4 4 4 PRO PRO B . n F 3 5 GLU 5 5 5 GLU GLU B . n F 3 6 ILE 6 6 6 ILE ILE B . n F 3 7 ARG 7 7 7 ARG ARG B . n F 3 8 ARG 8 8 8 ARG ARG B . n F 3 9 ALA 9 9 9 ALA ALA B . n F 3 10 ALA 10 10 10 ALA ALA B . n F 3 11 ASP 11 11 11 ASP ASP B . n F 3 12 ASN 12 12 12 ASN ASN B . n F 3 13 LEU 13 13 13 LEU LEU B . n F 3 14 GLU 14 14 14 GLU GLU B . n F 3 15 ALA 15 15 15 ALA ALA B . n F 3 16 ALA 16 16 16 ALA ALA B . n F 3 17 ILE 17 17 17 ILE ILE B . n F 3 18 LYS 18 18 18 LYS LYS B . n F 3 19 GLY 19 19 19 GLY GLY B . n F 3 20 LYS 20 20 20 LYS LYS B . n F 3 21 PRO 21 21 21 PRO PRO B . n F 3 22 LEU 22 22 22 LEU LEU B . n F 3 23 THR 23 23 23 THR THR B . n F 3 24 ASP 24 24 24 ASP ASP B . n F 3 25 VAL 25 25 25 VAL VAL B . n F 3 26 TRP 26 26 26 TRP TRP B . n F 3 27 PHE 27 27 27 PHE PHE B . n F 3 28 ALA 28 28 28 ALA ALA B . n F 3 29 PHE 29 29 29 PHE PHE B . n F 3 30 PRO 30 30 30 PRO PRO B . n F 3 31 GLN 31 31 31 GLN GLN B . n F 3 32 LEU 32 32 32 LEU LEU B . n F 3 33 LYS 33 33 33 LYS LYS B . n F 3 34 THR 34 34 34 THR THR B . n F 3 35 TYR 35 35 35 TYR TYR B . n F 3 36 GLN 36 36 36 GLN GLN B . n F 3 37 SER 37 37 37 SER SER B . n F 3 38 GLN 38 38 38 GLN GLN B . n F 3 39 LEU 39 39 39 LEU LEU B . n F 3 40 ILE 40 40 40 ILE ILE B . n F 3 41 GLY 41 41 41 GLY GLY B . n F 3 42 GLN 42 42 42 GLN GLN B . n F 3 43 HIS 43 43 43 HIS HIS B . n F 3 44 VAL 44 44 44 VAL VAL B . n F 3 45 THR 45 45 45 THR THR B . n F 3 46 HIS 46 46 46 HIS HIS B . n F 3 47 VAL 47 47 47 VAL VAL B . n F 3 48 GLU 48 48 48 GLU GLU B . n F 3 49 THR 49 49 49 THR THR B . n F 3 50 ARG 50 50 50 ARG ARG B . n F 3 51 GLY 51 51 51 GLY GLY B . n F 3 52 LYS 52 52 52 LYS LYS B . n F 3 53 ALA 53 53 53 ALA ALA B . n F 3 54 LEU 54 54 54 LEU LEU B . n F 3 55 LEU 55 55 55 LEU LEU B . n F 3 56 THR 56 56 56 THR THR B . n F 3 57 HIS 57 57 57 HIS HIS B . n F 3 58 PHE 58 58 58 PHE PHE B . n F 3 59 SER 59 59 59 SER SER B . n F 3 60 ASN 60 60 60 ASN ASN B . n F 3 61 ASP 61 61 61 ASP ASP B . n F 3 62 LEU 62 62 62 LEU LEU B . n F 3 63 THR 63 63 63 THR THR B . n F 3 64 LEU 64 64 64 LEU LEU B . n F 3 65 TYR 65 65 65 TYR TYR B . n F 3 66 SER 66 66 66 SER SER B . n F 3 67 HIS 67 67 67 HIS HIS B . n F 3 68 ASN 68 68 68 ASN ASN B . n F 3 69 GLN 69 69 69 GLN GLN B . n F 3 70 LEU 70 70 70 LEU LEU B . n F 3 71 TYR 71 71 71 TYR TYR B . n F 3 72 GLY 72 72 72 GLY GLY B . n F 3 73 VAL 73 73 73 VAL VAL B . n F 3 74 TRP 74 74 74 TRP TRP B . n F 3 75 ARG 75 75 75 ARG ARG B . n F 3 76 VAL 76 76 76 VAL VAL B . n F 3 77 VAL 77 77 77 VAL VAL B . n F 3 78 ASP 78 78 78 ASP ASP B . n F 3 79 THR 79 79 79 THR THR B . n F 3 80 GLY 80 80 80 GLY GLY B . n F 3 81 GLU 81 81 81 GLU GLU B . n F 3 82 GLU 82 82 82 GLU GLU B . n F 3 83 PRO 83 83 83 PRO PRO B . n F 3 84 GLN 84 84 84 GLN GLN B . n F 3 85 THR 85 85 85 THR THR B . n F 3 86 THR 86 86 86 THR THR B . n F 3 87 ARG 87 87 87 ARG ARG B . n F 3 88 VAL 88 88 88 VAL VAL B . n F 3 89 LEU 89 89 89 LEU LEU B . n F 3 90 ARG 90 90 90 ARG ARG B . n F 3 91 VAL 91 91 91 VAL VAL B . n F 3 92 LYS 92 92 92 LYS LYS B . n F 3 93 LEU 93 93 93 LEU LEU B . n F 3 94 GLN 94 94 94 GLN GLN B . n F 3 95 THR 95 95 95 THR THR B . n F 3 96 ALA 96 96 96 ALA ALA B . n F 3 97 ASP 97 97 97 ASP ASP B . n F 3 98 LYS 98 98 98 LYS LYS B . n F 3 99 THR 99 99 99 THR THR B . n F 3 100 ILE 100 100 100 ILE ILE B . n F 3 101 LEU 101 101 101 LEU LEU B . n F 3 102 LEU 102 102 102 LEU LEU B . n F 3 103 TYR 103 103 103 TYR TYR B . n F 3 104 SER 104 104 104 SER SER B . n F 3 105 ALA 105 105 105 ALA ALA B . n F 3 106 SER 106 106 106 SER SER B . n F 3 107 ASP 107 107 107 ASP ASP B . n F 3 108 ILE 108 108 108 ILE ILE B . n F 3 109 GLU 109 109 109 GLU GLU B . n F 3 110 MET 110 110 110 MET MET B . n F 3 111 LEU 111 111 111 LEU LEU B . n F 3 112 ARG 112 112 112 ARG ARG B . n F 3 113 PRO 113 113 113 PRO PRO B . n F 3 114 GLU 114 114 114 GLU GLU B . n F 3 115 GLN 115 115 115 GLN GLN B . n F 3 116 LEU 116 116 116 LEU LEU B . n F 3 117 THR 117 117 117 THR THR B . n F 3 118 THR 118 118 118 THR THR B . n F 3 119 HIS 119 119 119 HIS HIS B . n F 3 120 PRO 120 120 120 PRO PRO B . n F 3 121 PHE 121 121 121 PHE PHE B . n F 3 122 LEU 122 122 122 LEU LEU B . n F 3 123 GLN 123 123 123 GLN GLN B . n F 3 124 ARG 124 124 124 ARG ARG B . n F 3 125 VAL 125 125 125 VAL VAL B . n F 3 126 GLY 126 126 126 GLY GLY B . n F 3 127 PRO 127 127 127 PRO PRO B . n F 3 128 ASP 128 128 128 ASP ASP B . n F 3 129 VAL 129 129 129 VAL VAL B . n F 3 130 LEU 130 130 130 LEU LEU B . n F 3 131 ASP 131 131 131 ASP ASP B . n F 3 132 PRO 132 132 132 PRO PRO B . n F 3 133 ASN 133 133 133 ASN ASN B . n F 3 134 LEU 134 134 134 LEU LEU B . n F 3 135 THR 135 135 135 THR THR B . n F 3 136 PRO 136 136 136 PRO PRO B . n F 3 137 GLU 137 137 137 GLU GLU B . n F 3 138 VAL 138 138 138 VAL VAL B . n F 3 139 VAL 139 139 139 VAL VAL B . n F 3 140 LYS 140 140 140 LYS LYS B . n F 3 141 GLU 141 141 141 GLU GLU B . n F 3 142 ARG 142 142 142 ARG ARG B . n F 3 143 LEU 143 143 143 LEU LEU B . n F 3 144 LEU 144 144 144 LEU LEU B . n F 3 145 SER 145 145 145 SER SER B . n F 3 146 PRO 146 146 146 PRO PRO B . n F 3 147 ARG 147 147 147 ARG ARG B . n F 3 148 PHE 148 148 148 PHE PHE B . n F 3 149 ARG 149 149 149 ARG ARG B . n F 3 150 ASN 150 150 150 ASN ASN B . n F 3 151 ARG 151 151 151 ARG ARG B . n F 3 152 GLN 152 152 152 GLN GLN B . n F 3 153 PHE 153 153 153 PHE PHE B . n F 3 154 ALA 154 154 154 ALA ALA B . n F 3 155 GLY 155 155 155 GLY GLY B . n F 3 156 LEU 156 156 156 LEU LEU B . n F 3 157 LEU 157 157 157 LEU LEU B . n F 3 158 LEU 158 158 158 LEU LEU B . n F 3 159 ASP 159 159 159 ASP ASP B . n F 3 160 GLN 160 160 160 GLN GLN B . n F 3 161 ALA 161 161 161 ALA ALA B . n F 3 162 PHE 162 162 162 PHE PHE B . n F 3 163 LEU 163 163 163 LEU LEU B . n F 3 164 ALA 164 164 164 ALA ALA B . n F 3 165 GLY 165 165 165 GLY GLY B . n F 3 166 LEU 166 166 166 LEU LEU B . n F 3 167 GLY 167 167 167 GLY GLY B . n F 3 168 ASN 168 168 168 ASN ASN B . n F 3 169 TYR 169 169 169 TYR TYR B . n F 3 170 LEU 170 170 170 LEU LEU B . n F 3 171 ARG 171 171 171 ARG ARG B . n F 3 172 VAL 172 172 172 VAL VAL B . n F 3 173 GLU 173 173 173 GLU GLU B . n F 3 174 ILE 174 174 174 ILE ILE B . n F 3 175 LEU 175 175 175 LEU LEU B . n F 3 176 TRP 176 176 176 TRP TRP B . n F 3 177 GLN 177 177 177 GLN GLN B . n F 3 178 VAL 178 178 178 VAL VAL B . n F 3 179 GLY 179 179 179 GLY GLY B . n F 3 180 LEU 180 180 180 LEU LEU B . n F 3 181 THR 181 181 181 THR THR B . n F 3 182 GLY 182 182 182 GLY GLY B . n F 3 183 ASN 183 183 183 ASN ASN B . n F 3 184 HIS 184 184 184 HIS HIS B . n F 3 185 LYS 185 185 185 LYS LYS B . n F 3 186 ALA 186 186 186 ALA ALA B . n F 3 187 LYS 187 187 187 LYS LYS B . n F 3 188 ASP 188 188 188 ASP ASP B . n F 3 189 LEU 189 189 189 LEU LEU B . n F 3 190 ASN 190 190 190 ASN ASN B . n F 3 191 ALA 191 191 191 ALA ALA B . n F 3 192 ALA 192 192 192 ALA ALA B . n F 3 193 GLN 193 193 193 GLN GLN B . n F 3 194 LEU 194 194 194 LEU LEU B . n F 3 195 ASP 195 195 195 ASP GLY B . n F 3 196 ALA 196 196 196 ALA ALA B . n F 3 197 LEU 197 197 197 LEU LEU B . n F 3 198 ALA 198 198 198 ALA ALA B . n F 3 199 HIS 199 199 199 HIS HIS B . n F 3 200 ALA 200 200 200 ALA ALA B . n F 3 201 LEU 201 201 201 LEU LEU B . n F 3 202 LEU 202 202 202 LEU LEU B . n F 3 203 GLU 203 203 203 GLU GLU B . n F 3 204 ILE 204 204 204 ILE ILE B . n F 3 205 PRO 205 205 205 PRO PRO B . n F 3 206 ARG 206 206 206 ARG ARG B . n F 3 207 PHE 207 207 207 PHE PHE B . n F 3 208 SER 208 208 208 SER SER B . n F 3 209 TYR 209 209 209 TYR TYR B . n F 3 210 ALA 210 210 210 ALA ALA B . n F 3 211 THR 211 211 211 THR THR B . n F 3 212 ARG 212 212 212 ARG ARG B . n F 3 213 GLY 213 213 ? ? ? B . n F 3 214 GLN 214 214 ? ? ? B . n F 3 215 VAL 215 215 ? ? ? B . n F 3 216 ASP 216 216 ? ? ? B . n F 3 217 GLU 217 217 ? ? ? B . n F 3 218 ASN 218 218 ? ? ? B . n F 3 219 LYS 219 219 ? ? ? B . n F 3 220 HIS 220 220 ? ? ? B . n F 3 221 HIS 221 221 ? ? ? B . n F 3 222 GLY 222 222 ? ? ? B . n F 3 223 ALA 223 223 223 ALA ALA B . n F 3 224 LEU 224 224 224 LEU ALA B . n F 3 225 PHE 225 225 225 PHE PHE B . n F 3 226 ARG 226 226 226 ARG ARG B . n F 3 227 PHE 227 227 227 PHE PHE B . n F 3 228 LYS 228 228 228 LYS LYS B . n F 3 229 VAL 229 229 229 VAL VAL B . n F 3 230 PHE 230 230 230 PHE PHE B . n F 3 231 HIS 231 231 231 HIS HIS B . n F 3 232 ARG 232 232 232 ARG ARG B . n F 3 233 ASP 233 233 233 ASP ASP B . n F 3 234 GLY 234 234 234 GLY GLY B . n F 3 235 GLU 235 235 235 GLU GLU B . n F 3 236 PRO 236 236 236 PRO PRO B . n F 3 237 CYS 237 237 237 CYS CYS B . n F 3 238 GLU 238 238 238 GLU GLU B . n F 3 239 ARG 239 239 239 ARG ARG B . n F 3 240 CYS 240 240 240 CYS CYS B . n F 3 241 GLY 241 241 241 GLY GLY B . n F 3 242 SER 242 242 242 SER SER B . n F 3 243 ILE 243 243 243 ILE ILE B . n F 3 244 ILE 244 244 244 ILE ILE B . n F 3 245 GLU 245 245 245 GLU GLU B . n F 3 246 LYS 246 246 246 LYS LYS B . n F 3 247 THR 247 247 247 THR THR B . n F 3 248 THR 248 248 248 THR THR B . n F 3 249 LEU 249 249 249 LEU LEU B . n F 3 250 SER 250 250 250 SER SER B . n F 3 251 SER 251 251 251 SER SER B . n F 3 252 ARG 252 252 252 ARG ARG B . n F 3 253 PRO 253 253 253 PRO PRO B . n F 3 254 PHE 254 254 254 PHE PHE B . n F 3 255 TYR 255 255 255 TYR GLY B . n F 3 256 TRP 256 256 256 TRP TRP B . n F 3 257 CYS 257 257 257 CYS CYS B . n F 3 258 PRO 258 258 ? ? ? B . n F 3 259 GLY 259 259 ? ? ? B . n F 3 260 CYS 260 260 260 CYS CYS B . n F 3 261 GLN 261 261 261 GLN GLN B . n F 3 262 HIS 262 262 262 HIS HIS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NA 1 701 701 NA NA F . H 5 ZN 1 501 501 ZN ZN A . I 6 SO4 1 601 601 SO4 SO4 A . J 5 ZN 1 501 501 ZN ZN B . K 6 SO4 1 602 602 SO4 SO4 B . L 6 SO4 1 603 603 SO4 SO4 B . M 4 NA 1 702 702 NA NA B . N 7 HOH 1 1103 1103 HOH WAT C . N 7 HOH 2 1104 1104 HOH WAT C . O 7 HOH 1 1018 1018 HOH WAT D . O 7 HOH 2 1028 1028 HOH WAT D . O 7 HOH 3 1040 1040 HOH WAT D . O 7 HOH 4 1041 1041 HOH WAT D . O 7 HOH 5 1053 1053 HOH WAT D . O 7 HOH 6 1056 1056 HOH WAT D . P 7 HOH 1 1005 1005 HOH WAT E . P 7 HOH 2 1065 1065 HOH WAT E . Q 7 HOH 1 1058 1058 HOH WAT F . Q 7 HOH 2 1088 1088 HOH WAT F . Q 7 HOH 3 1092 1092 HOH WAT F . Q 7 HOH 4 1093 1093 HOH WAT F . Q 7 HOH 5 1098 1098 HOH WAT F . Q 7 HOH 6 1114 1114 HOH WAT F . R 7 HOH 1 1001 1001 HOH WAT A . R 7 HOH 2 1010 1010 HOH WAT A . R 7 HOH 3 1011 1011 HOH WAT A . R 7 HOH 4 1012 1012 HOH WAT A . R 7 HOH 5 1020 1020 HOH WAT A . R 7 HOH 6 1021 1021 HOH WAT A . R 7 HOH 7 1023 1023 HOH WAT A . R 7 HOH 8 1024 1024 HOH WAT A . R 7 HOH 9 1025 1025 HOH WAT A . R 7 HOH 10 1026 1026 HOH WAT A . R 7 HOH 11 1031 1031 HOH WAT A . R 7 HOH 12 1032 1032 HOH WAT A . R 7 HOH 13 1033 1033 HOH WAT A . R 7 HOH 14 1034 1034 HOH WAT A . R 7 HOH 15 1042 1042 HOH WAT A . R 7 HOH 16 1046 1046 HOH WAT A . R 7 HOH 17 1052 1052 HOH WAT A . R 7 HOH 18 1055 1055 HOH WAT A . R 7 HOH 19 1057 1057 HOH WAT A . R 7 HOH 20 1061 1061 HOH WAT A . R 7 HOH 21 1063 1063 HOH WAT A . R 7 HOH 22 1067 1067 HOH WAT A . R 7 HOH 23 1068 1068 HOH WAT A . R 7 HOH 24 1069 1069 HOH WAT A . R 7 HOH 25 1073 1073 HOH WAT A . R 7 HOH 26 1075 1075 HOH WAT A . R 7 HOH 27 1076 1076 HOH WAT A . R 7 HOH 28 1077 1077 HOH WAT A . R 7 HOH 29 1081 1081 HOH WAT A . R 7 HOH 30 1083 1083 HOH WAT A . R 7 HOH 31 1090 1090 HOH WAT A . R 7 HOH 32 1094 1094 HOH WAT A . R 7 HOH 33 1095 1095 HOH WAT A . R 7 HOH 34 1096 1096 HOH WAT A . R 7 HOH 35 1113 1113 HOH WAT A . R 7 HOH 36 1115 1115 HOH WAT A . R 7 HOH 37 1116 1116 HOH WAT A . R 7 HOH 38 1119 1119 HOH WAT A . S 7 HOH 1 1003 1003 HOH WAT B . S 7 HOH 2 1004 1004 HOH WAT B . S 7 HOH 3 1007 1007 HOH WAT B . S 7 HOH 4 1008 1008 HOH WAT B . S 7 HOH 5 1013 1013 HOH WAT B . S 7 HOH 6 1014 1014 HOH WAT B . S 7 HOH 7 1016 1016 HOH WAT B . S 7 HOH 8 1017 1017 HOH WAT B . S 7 HOH 9 1019 1019 HOH WAT B . S 7 HOH 10 1022 1022 HOH WAT B . S 7 HOH 11 1027 1027 HOH WAT B . S 7 HOH 12 1035 1035 HOH WAT B . S 7 HOH 13 1036 1036 HOH WAT B . S 7 HOH 14 1037 1037 HOH WAT B . S 7 HOH 15 1039 1039 HOH WAT B . S 7 HOH 16 1044 1044 HOH WAT B . S 7 HOH 17 1045 1045 HOH WAT B . S 7 HOH 18 1047 1047 HOH WAT B . S 7 HOH 19 1048 1048 HOH WAT B . S 7 HOH 20 1049 1049 HOH WAT B . S 7 HOH 21 1051 1051 HOH WAT B . S 7 HOH 22 1054 1054 HOH WAT B . S 7 HOH 23 1059 1059 HOH WAT B . S 7 HOH 24 1062 1062 HOH WAT B . S 7 HOH 25 1066 1066 HOH WAT B . S 7 HOH 26 1071 1071 HOH WAT B . S 7 HOH 27 1072 1072 HOH WAT B . S 7 HOH 28 1074 1074 HOH WAT B . S 7 HOH 29 1080 1080 HOH WAT B . S 7 HOH 30 1085 1085 HOH WAT B . S 7 HOH 31 1087 1087 HOH WAT B . S 7 HOH 32 1089 1089 HOH WAT B . S 7 HOH 33 1091 1091 HOH WAT B . S 7 HOH 34 1097 1097 HOH WAT B . S 7 HOH 35 1099 1099 HOH WAT B . S 7 HOH 36 1100 1100 HOH WAT B . S 7 HOH 37 1101 1101 HOH WAT B . S 7 HOH 38 1102 1102 HOH WAT B . S 7 HOH 39 1117 1117 HOH WAT B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DG 402 ? P ? A DG 2 P 2 1 Y 1 C DG 402 ? OP1 ? A DG 2 OP1 3 1 Y 1 C DG 402 ? OP2 ? A DG 2 OP2 4 1 Y 1 D DC 422 ? P ? B DC 2 P 5 1 Y 1 D DC 422 ? OP1 ? B DC 2 OP1 6 1 Y 1 D DC 422 ? OP2 ? B DC 2 OP2 7 1 Y 1 E DT 404 ? P ? C DT 4 P 8 1 Y 1 E DT 404 ? OP1 ? C DT 4 OP1 9 1 Y 1 E DT 404 ? OP2 ? C DT 4 OP2 10 1 Y 1 F DC 422 ? P ? D DC 2 P 11 1 Y 1 F DC 422 ? OP1 ? D DC 2 OP1 12 1 Y 1 F DC 422 ? OP2 ? D DC 2 OP2 13 1 Y 1 A THR 86 ? OG1 ? E THR 86 OG1 14 1 Y 1 A THR 86 ? CG2 ? E THR 86 CG2 15 1 Y 1 A ARG 149 ? CG ? E ARG 149 CG 16 1 Y 1 A ARG 149 ? CD ? E ARG 149 CD 17 1 Y 1 A ARG 149 ? NE ? E ARG 149 NE 18 1 Y 1 A ARG 149 ? CZ ? E ARG 149 CZ 19 1 Y 1 A ARG 149 ? NH1 ? E ARG 149 NH1 20 1 Y 1 A ARG 149 ? NH2 ? E ARG 149 NH2 21 1 Y 1 A ILE 243 ? CG1 ? E ILE 243 CG1 22 1 Y 1 A ILE 243 ? CG2 ? E ILE 243 CG2 23 1 Y 1 A ILE 243 ? CD1 ? E ILE 243 CD1 24 1 Y 1 B ASP 195 ? CB ? F ASP 195 CB 25 1 Y 1 B ASP 195 ? CG ? F ASP 195 CG 26 1 Y 1 B ASP 195 ? OD1 ? F ASP 195 OD1 27 1 Y 1 B ASP 195 ? OD2 ? F ASP 195 OD2 28 1 Y 1 B LEU 224 ? CG ? F LEU 224 CG 29 1 Y 1 B LEU 224 ? CD1 ? F LEU 224 CD1 30 1 Y 1 B LEU 224 ? CD2 ? F LEU 224 CD2 31 1 Y 1 B TYR 255 ? CB ? F TYR 255 CB 32 1 Y 1 B TYR 255 ? CG ? F TYR 255 CG 33 1 Y 1 B TYR 255 ? CD1 ? F TYR 255 CD1 34 1 Y 1 B TYR 255 ? CD2 ? F TYR 255 CD2 35 1 Y 1 B TYR 255 ? CE1 ? F TYR 255 CE1 36 1 Y 1 B TYR 255 ? CE2 ? F TYR 255 CE2 37 1 Y 1 B TYR 255 ? CZ ? F TYR 255 CZ 38 1 Y 1 B TYR 255 ? OH ? F TYR 255 OH # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 d*TREK 'data reduction' . ? 2 d*TREK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 2OQ4 _cell.length_a 107.130 _cell.length_b 107.130 _cell.length_c 164.860 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OQ4 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2OQ4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.11 _exptl_crystal.density_percent_sol 60.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '1.8M ammonium sulfate, 0.1M sodium acetate pH 4.6-5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'ammonium sulfate' ? ? ? 1 2 1 'sodium acetate' ? ? ? 1 3 1 h2o ? ? ? 1 4 2 'ammonium sulfate' ? ? ? 1 5 2 'sodium acetate' ? ? ? 1 6 2 h2o ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.102 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.102 # _reflns.entry_id 2OQ4 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 16.73 _reflns.d_resolution_high 2.6 _reflns.number_obs 30010 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.1 _reflns.B_iso_Wilson_estimate 48.1 _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.69 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.338 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OQ4 _refine.ls_number_reflns_obs 29947 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1272101.92 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 16.00 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.374 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.374 _refine.ls_R_factor_R_free 0.432 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 2998 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 47.0 _refine.aniso_B[1][1] 7.17 _refine.aniso_B[2][2] 7.17 _refine.aniso_B[3][3] -14.34 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.34846 _refine.solvent_model_param_bsol 57.8921 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Data processing indicated that the crystal was twinned but the exact nature of the twining was not clear. Treatment of the data with the twinning utility of CNS indicated unequal (major and minor) twinning fractions, but a refinement of the initial model, ignoring the twinning and considering only the major twinning fraction, gave better structural results, with relatively reasonable final R and Rfree. ; _refine.pdbx_starting_model 2EA0 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2OQ4 _refine_analyze.Luzzati_coordinate_error_obs 0.56 _refine_analyze.Luzzati_sigma_a_obs -0.26 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.75 _refine_analyze.Luzzati_sigma_a_free 0.27 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4014 _refine_hist.pdbx_number_atoms_nucleic_acid 850 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 4976 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 16.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.195 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.02 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work 4359 _refine_ls_shell.R_factor_R_work 0.369 _refine_ls_shell.percent_reflns_obs 98.7 _refine_ls_shell.R_factor_R_free 0.457 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 10.5 _refine_ls_shell.number_reflns_R_free 511 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna-ped.param dna-rna-ped.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 water_rep.param water.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2OQ4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2OQ4 _struct.title ;Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrate ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OQ4 _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'Endonuclease VIII, oxidative damage, DNA repair, base excision, covalent intermediate, reaction mechanism, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 5 ? K N N 6 ? L N N 6 ? M N N 4 ? N N N 7 ? O N N 7 ? P N N 7 ? Q N N 7 ? R N N 7 ? S N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP END8_ECOLI P50465 3 ;PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH ; 2 ? 2 PDB 2OQ4 2OQ4 1 ? ? ? 3 PDB 2OQ4 2OQ4 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OQ4 A 1 ? 262 ? P50465 2 ? 263 ? 1 262 2 1 2OQ4 B 1 ? 262 ? P50465 2 ? 263 ? 1 262 3 2 2OQ4 C 1 ? 13 ? 2OQ4 401 ? 413 ? 401 413 4 3 2OQ4 D 1 ? 13 ? 2OQ4 421 ? 433 ? 421 433 5 2 2OQ4 E 1 ? 13 ? 2OQ4 401 ? 413 ? 401 413 6 3 2OQ4 F 1 ? 13 ? 2OQ4 421 ? 433 ? 421 433 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OQ4 GLN A 2 ? UNP P50465 GLU 3 'engineered mutation' 2 1 1 2OQ4 THR A 34 ? UNP P50465 PRO 35 'SEE REMARK 999' 34 2 1 2OQ4 ARG A 112 ? UNP P50465 THR 113 'SEE REMARK 999' 112 3 2 2OQ4 GLN B 2 ? UNP P50465 GLU 3 'engineered mutation' 2 4 2 2OQ4 THR B 34 ? UNP P50465 PRO 35 'SEE REMARK 999' 34 5 2 2OQ4 ARG B 112 ? UNP P50465 THR 113 'SEE REMARK 999' 112 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,H,I,N,O,R 2 1 C,D,F,G,J,K,L,M,P,Q,S # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN E 2 ? LYS E 18 ? GLN A 2 LYS A 18 1 ? 17 HELX_P HELX_P2 2 PHE E 29 ? THR E 34 ? PHE A 29 THR A 34 1 ? 6 HELX_P HELX_P3 3 TYR E 35 ? ILE E 40 ? TYR A 35 ILE A 40 1 ? 6 HELX_P HELX_P4 4 GLU E 114 ? THR E 118 ? GLU A 114 THR A 118 5 ? 5 HELX_P HELX_P5 5 HIS E 119 ? VAL E 125 ? HIS A 119 VAL A 125 1 ? 7 HELX_P HELX_P6 6 THR E 135 ? SER E 145 ? THR A 135 SER A 145 1 ? 11 HELX_P HELX_P7 7 GLN E 152 ? LEU E 157 ? GLN A 152 LEU A 157 1 ? 6 HELX_P HELX_P8 8 GLY E 167 ? VAL E 178 ? GLY A 167 VAL A 178 1 ? 12 HELX_P HELX_P9 9 ASN E 190 ? ARG E 212 ? ASN A 190 ARG A 212 1 ? 23 HELX_P HELX_P10 10 GLY F 3 ? LYS F 18 ? GLY B 3 LYS B 18 1 ? 16 HELX_P HELX_P11 11 THR F 34 ? ILE F 40 ? THR B 34 ILE B 40 1 ? 7 HELX_P HELX_P12 12 ARG F 112 ? THR F 117 ? ARG B 112 THR B 117 1 ? 6 HELX_P HELX_P13 13 HIS F 119 ? VAL F 125 ? HIS B 119 VAL B 125 1 ? 7 HELX_P HELX_P14 14 THR F 135 ? SER F 145 ? THR B 135 SER B 145 1 ? 11 HELX_P HELX_P15 15 GLN F 152 ? LEU F 157 ? GLN B 152 LEU B 157 1 ? 6 HELX_P HELX_P16 16 GLY F 167 ? VAL F 178 ? GLY B 167 VAL B 178 1 ? 12 HELX_P HELX_P17 17 ASN F 190 ? ARG F 212 ? ASN B 190 ARG B 212 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B DA 6 "O3'" ? ? ? 1_555 B PED 7 P ? ? D DA 426 D PED 427 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale one ? B PED 7 "O3'" ? ? ? 1_555 B DG 8 P ? ? D PED 427 D DG 428 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale3 covale one ? B PED 7 "C1'" ? ? ? 1_555 E PRO 1 N ? ? D PED 427 A PRO 1 1_555 ? ? ? ? ? ? ? 1.452 ? ? covale4 covale one ? D DA 6 "O3'" ? ? ? 1_555 D PED 7 P ? ? F DA 426 F PED 427 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale5 covale one ? D PED 7 "O3'" ? ? ? 1_555 D DG 8 P ? ? F PED 427 F DG 428 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale6 covale one ? D PED 7 "C1'" ? ? ? 1_555 F PRO 1 N ? ? F PED 427 B PRO 1 1_555 ? ? ? ? ? ? ? 1.443 ? ? metalc1 metalc ? ? E CYS 237 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 237 A ZN 501 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc2 metalc ? ? E CYS 240 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 240 A ZN 501 1_555 ? ? ? ? ? ? ? 2.547 ? ? metalc3 metalc ? ? E CYS 257 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 257 A ZN 501 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc4 metalc ? ? E CYS 260 SG ? ? ? 1_555 H ZN . ZN ? ? A CYS 260 A ZN 501 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc5 metalc ? ? F CYS 237 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 237 B ZN 501 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc6 metalc ? ? F CYS 240 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 240 B ZN 501 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc7 metalc ? ? F CYS 257 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 257 B ZN 501 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc8 metalc ? ? F CYS 260 SG ? ? ? 1_555 J ZN . ZN ? ? B CYS 260 B ZN 501 1_555 ? ? ? ? ? ? ? 2.014 ? ? hydrog1 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 12 N4 ? ? C DG 402 D DC 432 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 11 N1 ? ? C DC 403 D DG 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 11 O6 ? ? C DC 403 D DG 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 11 N2 ? ? C DC 403 D DG 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 405 D DA 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 405 D DA 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 10 N1 ? ? C DT 405 D DA 430 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog8 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 6 N1 ? ? C DT 408 D DA 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 6 N6 ? ? C DT 408 D DA 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 409 D DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 409 D DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 409 D DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 4 O6 ? ? C DC 410 D DG 424 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog14 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 2 N3 ? ? C DG 412 D DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 2 O2 ? ? C DG 412 D DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 2 N4 ? ? C DG 412 D DC 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DA 10 N1 ? ? E DT 404 F DA 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DT 4 O4 ? ? ? 1_555 D DA 10 N6 ? ? E DT 404 F DA 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 9 N1 ? ? E DT 405 F DA 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 9 N6 ? ? E DT 405 F DA 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 8 N1 ? ? E DC 406 F DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 8 O6 ? ? E DC 406 F DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 8 N2 ? ? E DC 406 F DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 6 N6 ? ? E DT 408 F DA 426 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog25 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 5 N1 ? ? E DC 409 F DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 5 O6 ? ? E DC 409 F DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 5 N2 ? ? E DC 409 F DG 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 11 N3 ? ? ? 1_555 D DA 3 N1 ? ? E DT 411 F DA 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 11 O4 ? ? ? 1_555 D DA 3 N6 ? ? E DT 411 F DA 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 2 N3 ? ? E DG 412 F DC 422 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? E CYS 237 ? A CYS 237 ? 1_555 ZN ? H ZN . ? A ZN 501 ? 1_555 SG ? E CYS 240 ? A CYS 240 ? 1_555 110.4 ? 2 SG ? E CYS 237 ? A CYS 237 ? 1_555 ZN ? H ZN . ? A ZN 501 ? 1_555 SG ? E CYS 257 ? A CYS 257 ? 1_555 100.5 ? 3 SG ? E CYS 240 ? A CYS 240 ? 1_555 ZN ? H ZN . ? A ZN 501 ? 1_555 SG ? E CYS 257 ? A CYS 257 ? 1_555 94.6 ? 4 SG ? E CYS 237 ? A CYS 237 ? 1_555 ZN ? H ZN . ? A ZN 501 ? 1_555 SG ? E CYS 260 ? A CYS 260 ? 1_555 112.2 ? 5 SG ? E CYS 240 ? A CYS 240 ? 1_555 ZN ? H ZN . ? A ZN 501 ? 1_555 SG ? E CYS 260 ? A CYS 260 ? 1_555 109.8 ? 6 SG ? E CYS 257 ? A CYS 257 ? 1_555 ZN ? H ZN . ? A ZN 501 ? 1_555 SG ? E CYS 260 ? A CYS 260 ? 1_555 127.7 ? 7 SG ? F CYS 237 ? B CYS 237 ? 1_555 ZN ? J ZN . ? B ZN 501 ? 1_555 SG ? F CYS 240 ? B CYS 240 ? 1_555 108.2 ? 8 SG ? F CYS 237 ? B CYS 237 ? 1_555 ZN ? J ZN . ? B ZN 501 ? 1_555 SG ? F CYS 257 ? B CYS 257 ? 1_555 112.6 ? 9 SG ? F CYS 240 ? B CYS 240 ? 1_555 ZN ? J ZN . ? B ZN 501 ? 1_555 SG ? F CYS 257 ? B CYS 257 ? 1_555 85.2 ? 10 SG ? F CYS 237 ? B CYS 237 ? 1_555 ZN ? J ZN . ? B ZN 501 ? 1_555 SG ? F CYS 260 ? B CYS 260 ? 1_555 110.4 ? 11 SG ? F CYS 240 ? B CYS 240 ? 1_555 ZN ? J ZN . ? B ZN 501 ? 1_555 SG ? F CYS 260 ? B CYS 260 ? 1_555 122.8 ? 12 SG ? F CYS 257 ? B CYS 257 ? 1_555 ZN ? J ZN . ? B ZN 501 ? 1_555 SG ? F CYS 260 ? B CYS 260 ? 1_555 115.5 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 PED B 7 ? PRO E 1 ? PED D 427 ? 1_555 PRO A 1 ? 1_555 "C1'" N PRO 5 PED None 'Covalent chemical modification' 2 PED D 7 ? PRO F 1 ? PED F 427 ? 1_555 PRO B 1 ? 1_555 "C1'" N PRO 5 PED None 'Covalent chemical modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? D ? 4 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP E 24 ? PHE E 27 ? ASP A 24 PHE A 27 A 2 LEU E 89 ? GLN E 94 ? LEU A 89 GLN A 94 A 3 LYS E 98 ? TYR E 103 ? LYS A 98 TYR A 103 A 4 VAL E 73 ? ASP E 78 ? VAL A 73 ASP A 78 B 1 VAL E 44 ? THR E 49 ? VAL A 44 THR A 49 B 2 ALA E 53 ? PHE E 58 ? ALA A 53 PHE A 58 B 3 THR E 63 ? HIS E 67 ? THR A 63 HIS A 67 B 4 ASP E 107 ? LEU E 111 ? ASP A 107 LEU A 111 C 1 GLU E 245 ? THR E 248 ? GLU A 245 THR A 248 C 2 PRO E 253 ? TRP E 256 ? PRO A 253 TRP A 256 D 1 LEU F 22 ? PHE F 27 ? LEU B 22 PHE B 27 D 2 LEU F 89 ? THR F 95 ? LEU B 89 THR B 95 D 3 THR F 99 ? TYR F 103 ? THR B 99 TYR B 103 D 4 VAL F 73 ? ARG F 75 ? VAL B 73 ARG B 75 E 1 HIS F 46 ? ARG F 50 ? HIS B 46 ARG B 50 E 2 ALA F 53 ? HIS F 57 ? ALA B 53 HIS B 57 E 3 THR F 63 ? HIS F 67 ? THR B 63 HIS B 67 E 4 ASP F 107 ? LEU F 111 ? ASP B 107 LEU B 111 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP E 26 ? N TRP A 26 O LYS E 92 ? O LYS A 92 A 2 3 N ARG E 90 ? N ARG A 90 O LEU E 102 ? O LEU A 102 A 3 4 O LEU E 101 ? O LEU A 101 N ARG E 75 ? N ARG A 75 B 1 2 N GLU E 48 ? N GLU A 48 O LEU E 55 ? O LEU A 55 B 2 3 N THR E 56 ? N THR A 56 O LEU E 64 ? O LEU A 64 B 3 4 N TYR E 65 ? N TYR A 65 O GLU E 109 ? O GLU A 109 C 1 2 N THR E 247 ? N THR A 247 O PHE E 254 ? O PHE A 254 D 1 2 N ASP F 24 ? N ASP B 24 O GLN F 94 ? O GLN B 94 D 2 3 N VAL F 91 ? N VAL B 91 O LEU F 102 ? O LEU B 102 D 3 4 O TYR F 103 ? O TYR B 103 N VAL F 73 ? N VAL B 73 E 1 2 N GLU F 48 ? N GLU B 48 O LEU F 55 ? O LEU B 55 E 2 3 N LEU F 54 ? N LEU B 54 O SER F 66 ? O SER B 66 E 3 4 N THR F 63 ? N THR B 63 O LEU F 111 ? O LEU B 111 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D PED 427 ? 9 'BINDING SITE FOR RESIDUE PED D 427' AC2 Software F PED 427 ? 6 'BINDING SITE FOR RESIDUE PED F 427' AC3 Software A ZN 501 ? 4 'BINDING SITE FOR RESIDUE ZN A 501' AC4 Software B ZN 501 ? 4 'BINDING SITE FOR RESIDUE ZN B 501' AC5 Software A SO4 601 ? 4 'BINDING SITE FOR RESIDUE SO4 A 601' AC6 Software B SO4 602 ? 4 'BINDING SITE FOR RESIDUE SO4 B 602' AC7 Software B SO4 603 ? 2 'BINDING SITE FOR RESIDUE SO4 B 603' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 PRO E 1 ? PRO A 1 . ? 1_555 ? 2 AC1 9 GLN E 2 ? GLN A 2 . ? 1_555 ? 3 AC1 9 LEU E 70 ? LEU A 70 . ? 1_555 ? 4 AC1 9 ASN E 168 ? ASN A 168 . ? 1_555 ? 5 AC1 9 PHE E 230 ? PHE A 230 . ? 1_555 ? 6 AC1 9 PRO E 253 ? PRO A 253 . ? 1_555 ? 7 AC1 9 DA B 6 ? DA D 426 . ? 1_555 ? 8 AC1 9 DG B 8 ? DG D 428 . ? 1_555 ? 9 AC1 9 HOH O . ? HOH D 1053 . ? 1_555 ? 10 AC2 6 PRO F 1 ? PRO B 1 . ? 1_555 ? 11 AC2 6 GLN F 2 ? GLN B 2 . ? 1_555 ? 12 AC2 6 ASN F 168 ? ASN B 168 . ? 1_555 ? 13 AC2 6 ARG F 252 ? ARG B 252 . ? 1_555 ? 14 AC2 6 DA D 6 ? DA F 426 . ? 1_555 ? 15 AC2 6 DG D 8 ? DG F 428 . ? 1_555 ? 16 AC3 4 CYS E 237 ? CYS A 237 . ? 1_555 ? 17 AC3 4 CYS E 240 ? CYS A 240 . ? 1_555 ? 18 AC3 4 CYS E 257 ? CYS A 257 . ? 1_555 ? 19 AC3 4 CYS E 260 ? CYS A 260 . ? 1_555 ? 20 AC4 4 CYS F 237 ? CYS B 237 . ? 1_555 ? 21 AC4 4 CYS F 240 ? CYS B 240 . ? 1_555 ? 22 AC4 4 CYS F 257 ? CYS B 257 . ? 1_555 ? 23 AC4 4 CYS F 260 ? CYS B 260 . ? 1_555 ? 24 AC5 4 PRO E 1 ? PRO A 1 . ? 1_555 ? 25 AC5 4 GLU E 5 ? GLU A 5 . ? 1_555 ? 26 AC5 4 ARG E 212 ? ARG A 212 . ? 1_555 ? 27 AC5 4 HOH O . ? HOH D 1053 . ? 1_555 ? 28 AC6 4 GLU F 81 ? GLU B 81 . ? 1_555 ? 29 AC6 4 GLU F 82 ? GLU B 82 . ? 1_555 ? 30 AC6 4 PRO F 83 ? PRO B 83 . ? 1_555 ? 31 AC6 4 HOH S . ? HOH B 1085 . ? 1_555 ? 32 AC7 2 ARG F 8 ? ARG B 8 . ? 1_555 ? 33 AC7 2 ASN F 12 ? ASN B 12 . ? 1_555 ? # _pdbx_entry_details.sequence_details 'SEQUENCING AND CRYSTALLOGRAPHY CONFIRM THE SEQUENCE AS THR A 34, THR B 34, ARG A 112, ARG B 112.' _pdbx_entry_details.entry_id 2OQ4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B GLN 2 ? ? O B GLY 165 ? ? 2.17 2 1 OG1 A THR 181 ? ? OD1 A ASN 183 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 36 ? ? -58.06 -79.18 2 1 HIS A 46 ? ? -176.09 143.10 3 1 ARG A 50 ? ? -158.76 50.27 4 1 GLN A 69 ? ? 44.94 -111.24 5 1 THR A 85 ? ? 178.06 167.07 6 1 SER A 104 ? ? 66.00 -61.60 7 1 ALA A 105 ? ? -21.09 140.14 8 1 GLU A 114 ? ? 137.86 -49.43 9 1 PRO A 127 ? ? -48.51 156.59 10 1 ASN A 133 ? ? -48.80 -11.30 11 1 SER A 145 ? ? -48.53 157.00 12 1 LEU A 157 ? ? -65.81 2.06 13 1 VAL A 229 ? ? -156.25 -9.76 14 1 SER A 250 ? ? 72.87 33.72 15 1 GLN B 2 ? ? -147.96 -13.41 16 1 GLN B 69 ? ? 37.37 -111.03 17 1 SER B 104 ? ? 50.85 -37.07 18 1 LEU B 116 ? ? -62.79 -88.72 19 1 THR B 117 ? ? -24.30 -51.03 20 1 PHE B 153 ? ? -55.83 -6.22 21 1 ARG B 171 ? ? -34.98 -78.74 22 1 THR B 181 ? ? -95.38 -147.08 23 1 ALA B 186 ? ? -64.33 12.48 24 1 LEU B 201 ? ? -58.68 -8.58 25 1 PHE B 230 ? ? -48.58 103.13 26 1 ARG B 239 ? ? -106.95 -63.27 27 1 THR B 247 ? ? 163.55 -172.64 28 1 SER B 251 ? ? 37.71 50.81 29 1 PHE B 254 ? ? -113.89 -83.44 30 1 TYR B 255 ? ? 87.62 133.48 31 1 TRP B 256 ? ? 175.60 -170.15 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG D 428 ? ? 0.078 'SIDE CHAIN' 2 1 DT E 411 ? ? 0.064 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C DG 401 ? A DG 1 2 1 Y 1 C DG 413 ? A DG 13 3 1 Y 1 D DC 421 ? B DC 1 4 1 Y 1 E DG 401 ? C DG 1 5 1 Y 1 E DG 402 ? C DG 2 6 1 Y 1 E DC 403 ? C DC 3 7 1 Y 1 E DG 413 ? C DG 13 8 1 Y 1 F DC 421 ? D DC 1 9 1 Y 1 F DC 433 ? D DC 13 10 1 Y 1 A GLN 214 ? E GLN 214 11 1 Y 1 A VAL 215 ? E VAL 215 12 1 Y 1 A ASP 216 ? E ASP 216 13 1 Y 1 A GLU 217 ? E GLU 217 14 1 Y 1 A ASN 218 ? E ASN 218 15 1 Y 1 A LYS 219 ? E LYS 219 16 1 Y 1 A HIS 220 ? E HIS 220 17 1 Y 1 A HIS 221 ? E HIS 221 18 1 Y 1 A GLY 222 ? E GLY 222 19 1 Y 1 A ALA 223 ? E ALA 223 20 1 Y 1 B GLY 213 ? F GLY 213 21 1 Y 1 B GLN 214 ? F GLN 214 22 1 Y 1 B VAL 215 ? F VAL 215 23 1 Y 1 B ASP 216 ? F ASP 216 24 1 Y 1 B GLU 217 ? F GLU 217 25 1 Y 1 B ASN 218 ? F ASN 218 26 1 Y 1 B LYS 219 ? F LYS 219 27 1 Y 1 B HIS 220 ? F HIS 220 28 1 Y 1 B HIS 221 ? F HIS 221 29 1 Y 1 B GLY 222 ? F GLY 222 30 1 Y 1 B PRO 258 ? F PRO 258 31 1 Y 1 B GLY 259 ? F GLY 259 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 NA NA NA N N 393 PED P P N N 394 PED O1P O N N 395 PED O2P O N N 396 PED O3P O N N 397 PED "O5'" O N N 398 PED "C2'" C N N 399 PED "C5'" C N N 400 PED "C4'" C N R 401 PED "O4'" O N N 402 PED "C3'" C N S 403 PED "C1'" C N N 404 PED "O3'" O N N 405 PED HOP2 H N N 406 PED HOP3 H N N 407 PED "H2'1" H N N 408 PED "H2'2" H N N 409 PED "H5'1" H N N 410 PED "H5'2" H N N 411 PED "H4'1" H N N 412 PED "HO'4" H N N 413 PED "H3'" H N N 414 PED "H1'1" H N N 415 PED "H1'2" H N N 416 PED "H1'3" H N N 417 PED H3T H N N 418 PHE N N N N 419 PHE CA C N S 420 PHE C C N N 421 PHE O O N N 422 PHE CB C N N 423 PHE CG C Y N 424 PHE CD1 C Y N 425 PHE CD2 C Y N 426 PHE CE1 C Y N 427 PHE CE2 C Y N 428 PHE CZ C Y N 429 PHE OXT O N N 430 PHE H H N N 431 PHE H2 H N N 432 PHE HA H N N 433 PHE HB2 H N N 434 PHE HB3 H N N 435 PHE HD1 H N N 436 PHE HD2 H N N 437 PHE HE1 H N N 438 PHE HE2 H N N 439 PHE HZ H N N 440 PHE HXT H N N 441 PRO N N N N 442 PRO CA C N S 443 PRO C C N N 444 PRO O O N N 445 PRO CB C N N 446 PRO CG C N N 447 PRO CD C N N 448 PRO OXT O N N 449 PRO H H N N 450 PRO HA H N N 451 PRO HB2 H N N 452 PRO HB3 H N N 453 PRO HG2 H N N 454 PRO HG3 H N N 455 PRO HD2 H N N 456 PRO HD3 H N N 457 PRO HXT H N N 458 SER N N N N 459 SER CA C N S 460 SER C C N N 461 SER O O N N 462 SER CB C N N 463 SER OG O N N 464 SER OXT O N N 465 SER H H N N 466 SER H2 H N N 467 SER HA H N N 468 SER HB2 H N N 469 SER HB3 H N N 470 SER HG H N N 471 SER HXT H N N 472 SO4 S S N N 473 SO4 O1 O N N 474 SO4 O2 O N N 475 SO4 O3 O N N 476 SO4 O4 O N N 477 THR N N N N 478 THR CA C N S 479 THR C C N N 480 THR O O N N 481 THR CB C N R 482 THR OG1 O N N 483 THR CG2 C N N 484 THR OXT O N N 485 THR H H N N 486 THR H2 H N N 487 THR HA H N N 488 THR HB H N N 489 THR HG1 H N N 490 THR HG21 H N N 491 THR HG22 H N N 492 THR HG23 H N N 493 THR HXT H N N 494 TRP N N N N 495 TRP CA C N S 496 TRP C C N N 497 TRP O O N N 498 TRP CB C N N 499 TRP CG C Y N 500 TRP CD1 C Y N 501 TRP CD2 C Y N 502 TRP NE1 N Y N 503 TRP CE2 C Y N 504 TRP CE3 C Y N 505 TRP CZ2 C Y N 506 TRP CZ3 C Y N 507 TRP CH2 C Y N 508 TRP OXT O N N 509 TRP H H N N 510 TRP H2 H N N 511 TRP HA H N N 512 TRP HB2 H N N 513 TRP HB3 H N N 514 TRP HD1 H N N 515 TRP HE1 H N N 516 TRP HE3 H N N 517 TRP HZ2 H N N 518 TRP HZ3 H N N 519 TRP HH2 H N N 520 TRP HXT H N N 521 TYR N N N N 522 TYR CA C N S 523 TYR C C N N 524 TYR O O N N 525 TYR CB C N N 526 TYR CG C Y N 527 TYR CD1 C Y N 528 TYR CD2 C Y N 529 TYR CE1 C Y N 530 TYR CE2 C Y N 531 TYR CZ C Y N 532 TYR OH O N N 533 TYR OXT O N N 534 TYR H H N N 535 TYR H2 H N N 536 TYR HA H N N 537 TYR HB2 H N N 538 TYR HB3 H N N 539 TYR HD1 H N N 540 TYR HD2 H N N 541 TYR HE1 H N N 542 TYR HE2 H N N 543 TYR HH H N N 544 TYR HXT H N N 545 VAL N N N N 546 VAL CA C N S 547 VAL C C N N 548 VAL O O N N 549 VAL CB C N N 550 VAL CG1 C N N 551 VAL CG2 C N N 552 VAL OXT O N N 553 VAL H H N N 554 VAL H2 H N N 555 VAL HA H N N 556 VAL HB H N N 557 VAL HG11 H N N 558 VAL HG12 H N N 559 VAL HG13 H N N 560 VAL HG21 H N N 561 VAL HG22 H N N 562 VAL HG23 H N N 563 VAL HXT H N N 564 ZN ZN ZN N N 565 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PED P O1P doub N N 386 PED P O2P sing N N 387 PED P O3P sing N N 388 PED P "O5'" sing N N 389 PED O2P HOP2 sing N N 390 PED O3P HOP3 sing N N 391 PED "O5'" "C5'" sing N N 392 PED "C2'" "C3'" sing N N 393 PED "C2'" "C1'" sing N N 394 PED "C2'" "H2'1" sing N N 395 PED "C2'" "H2'2" sing N N 396 PED "C5'" "C4'" sing N N 397 PED "C5'" "H5'1" sing N N 398 PED "C5'" "H5'2" sing N N 399 PED "C4'" "O4'" sing N N 400 PED "C4'" "C3'" sing N N 401 PED "C4'" "H4'1" sing N N 402 PED "O4'" "HO'4" sing N N 403 PED "C3'" "O3'" sing N N 404 PED "C3'" "H3'" sing N N 405 PED "C1'" "H1'1" sing N N 406 PED "C1'" "H1'2" sing N N 407 PED "C1'" "H1'3" sing N N 408 PED "O3'" H3T sing N N 409 PHE N CA sing N N 410 PHE N H sing N N 411 PHE N H2 sing N N 412 PHE CA C sing N N 413 PHE CA CB sing N N 414 PHE CA HA sing N N 415 PHE C O doub N N 416 PHE C OXT sing N N 417 PHE CB CG sing N N 418 PHE CB HB2 sing N N 419 PHE CB HB3 sing N N 420 PHE CG CD1 doub Y N 421 PHE CG CD2 sing Y N 422 PHE CD1 CE1 sing Y N 423 PHE CD1 HD1 sing N N 424 PHE CD2 CE2 doub Y N 425 PHE CD2 HD2 sing N N 426 PHE CE1 CZ doub Y N 427 PHE CE1 HE1 sing N N 428 PHE CE2 CZ sing Y N 429 PHE CE2 HE2 sing N N 430 PHE CZ HZ sing N N 431 PHE OXT HXT sing N N 432 PRO N CA sing N N 433 PRO N CD sing N N 434 PRO N H sing N N 435 PRO CA C sing N N 436 PRO CA CB sing N N 437 PRO CA HA sing N N 438 PRO C O doub N N 439 PRO C OXT sing N N 440 PRO CB CG sing N N 441 PRO CB HB2 sing N N 442 PRO CB HB3 sing N N 443 PRO CG CD sing N N 444 PRO CG HG2 sing N N 445 PRO CG HG3 sing N N 446 PRO CD HD2 sing N N 447 PRO CD HD3 sing N N 448 PRO OXT HXT sing N N 449 SER N CA sing N N 450 SER N H sing N N 451 SER N H2 sing N N 452 SER CA C sing N N 453 SER CA CB sing N N 454 SER CA HA sing N N 455 SER C O doub N N 456 SER C OXT sing N N 457 SER CB OG sing N N 458 SER CB HB2 sing N N 459 SER CB HB3 sing N N 460 SER OG HG sing N N 461 SER OXT HXT sing N N 462 SO4 S O1 doub N N 463 SO4 S O2 doub N N 464 SO4 S O3 sing N N 465 SO4 S O4 sing N N 466 THR N CA sing N N 467 THR N H sing N N 468 THR N H2 sing N N 469 THR CA C sing N N 470 THR CA CB sing N N 471 THR CA HA sing N N 472 THR C O doub N N 473 THR C OXT sing N N 474 THR CB OG1 sing N N 475 THR CB CG2 sing N N 476 THR CB HB sing N N 477 THR OG1 HG1 sing N N 478 THR CG2 HG21 sing N N 479 THR CG2 HG22 sing N N 480 THR CG2 HG23 sing N N 481 THR OXT HXT sing N N 482 TRP N CA sing N N 483 TRP N H sing N N 484 TRP N H2 sing N N 485 TRP CA C sing N N 486 TRP CA CB sing N N 487 TRP CA HA sing N N 488 TRP C O doub N N 489 TRP C OXT sing N N 490 TRP CB CG sing N N 491 TRP CB HB2 sing N N 492 TRP CB HB3 sing N N 493 TRP CG CD1 doub Y N 494 TRP CG CD2 sing Y N 495 TRP CD1 NE1 sing Y N 496 TRP CD1 HD1 sing N N 497 TRP CD2 CE2 doub Y N 498 TRP CD2 CE3 sing Y N 499 TRP NE1 CE2 sing Y N 500 TRP NE1 HE1 sing N N 501 TRP CE2 CZ2 sing Y N 502 TRP CE3 CZ3 doub Y N 503 TRP CE3 HE3 sing N N 504 TRP CZ2 CH2 doub Y N 505 TRP CZ2 HZ2 sing N N 506 TRP CZ3 CH2 sing Y N 507 TRP CZ3 HZ3 sing N N 508 TRP CH2 HH2 sing N N 509 TRP OXT HXT sing N N 510 TYR N CA sing N N 511 TYR N H sing N N 512 TYR N H2 sing N N 513 TYR CA C sing N N 514 TYR CA CB sing N N 515 TYR CA HA sing N N 516 TYR C O doub N N 517 TYR C OXT sing N N 518 TYR CB CG sing N N 519 TYR CB HB2 sing N N 520 TYR CB HB3 sing N N 521 TYR CG CD1 doub Y N 522 TYR CG CD2 sing Y N 523 TYR CD1 CE1 sing Y N 524 TYR CD1 HD1 sing N N 525 TYR CD2 CE2 doub Y N 526 TYR CD2 HD2 sing N N 527 TYR CE1 CZ doub Y N 528 TYR CE1 HE1 sing N N 529 TYR CE2 CZ sing Y N 530 TYR CE2 HE2 sing N N 531 TYR CZ OH sing N N 532 TYR OH HH sing N N 533 TYR OXT HXT sing N N 534 VAL N CA sing N N 535 VAL N H sing N N 536 VAL N H2 sing N N 537 VAL CA C sing N N 538 VAL CA CB sing N N 539 VAL CA HA sing N N 540 VAL C O doub N N 541 VAL C OXT sing N N 542 VAL CB CG1 sing N N 543 VAL CB CG2 sing N N 544 VAL CB HB sing N N 545 VAL CG1 HG11 sing N N 546 VAL CG1 HG12 sing N N 547 VAL CG1 HG13 sing N N 548 VAL CG2 HG21 sing N N 549 VAL CG2 HG22 sing N N 550 VAL CG2 HG23 sing N N 551 VAL OXT HXT sing N N 552 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2OQ4 'double helix' 2OQ4 'b-form double helix' 2OQ4 'mismatched base pair' 2OQ4 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 12 1_555 -2.303 -0.506 -0.460 2.618 -3.757 -38.968 1 C_DG402:DC432_D C 402 ? D 432 ? ? ? 1 A DC 3 1_555 B DG 11 1_555 0.861 -0.701 0.195 -0.186 -24.859 -15.302 2 C_DC403:DG431_D C 403 ? D 431 ? 19 1 1 A DT 5 1_555 B DA 9 1_555 -1.153 -0.562 -0.823 4.780 0.023 -2.474 3 C_DT405:DA429_D C 405 ? D 429 ? 20 1 1 A DT 8 1_555 B DA 6 1_555 0.112 -0.080 -0.485 -8.380 -5.596 -10.462 4 C_DT408:DA426_D C 408 ? D 426 ? 20 1 1 A DC 9 1_555 B DG 5 1_555 0.320 -0.291 -0.321 -4.098 -12.650 -13.290 5 C_DC409:DG425_D C 409 ? D 425 ? 19 1 1 A DC 10 1_555 B DG 4 1_555 -1.185 0.419 0.440 -2.913 -6.828 -2.724 6 C_DC410:DG424_D C 410 ? D 424 ? ? 1 1 A DG 12 1_555 B DC 2 1_555 -0.592 -0.894 0.335 6.261 -7.788 -6.053 7 C_DG412:DC422_D C 412 ? D 422 ? 19 1 1 D DC 2 1_555 C DG 12 1_555 -2.885 -0.014 -0.552 8.979 -6.505 1.670 8 F_DC422:DG412_E F 422 ? E 412 ? ? ? 1 D DA 3 1_555 C DT 11 1_555 1.299 -0.381 -0.111 35.722 -25.511 1.953 9 F_DA423:DT411_E F 423 ? E 411 ? 20 1 1 D DG 5 1_555 C DC 9 1_555 0.484 -0.517 0.196 7.251 -6.742 -5.894 10 F_DG425:DC409_E F 425 ? E 409 ? 19 1 1 D DA 6 1_555 C DT 8 1_555 -1.024 0.337 0.097 13.266 2.180 -3.894 11 F_DA426:DT408_E F 426 ? E 408 ? ? ? 1 C DT 4 1_555 D DA 10 1_555 0.507 0.001 0.250 -16.555 -14.094 -6.646 12 E_DT404:DA430_F E 404 ? F 430 ? 20 1 1 C DT 5 1_555 D DA 9 1_555 -1.130 0.120 0.563 -9.525 4.113 -10.184 13 E_DT405:DA429_F E 405 ? F 429 ? 20 1 1 C DC 6 1_555 D DG 8 1_555 0.109 -0.314 0.648 8.741 7.170 -2.883 14 E_DC406:DG428_F E 406 ? F 428 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 12 1_555 A DC 3 1_555 B DG 11 1_555 0.826 -0.536 3.539 -5.260 2.483 53.753 -0.753 -1.255 3.424 2.737 5.798 54.044 1 CC_DG402DC403:DG431DC432_DD C 402 ? D 432 ? C 403 ? D 431 ? 1 A DC 3 1_555 B DG 11 1_555 A DT 5 1_555 B DA 9 1_555 1.133 -0.645 6.359 15.113 1.661 62.640 -0.747 0.220 6.438 1.573 -14.314 64.277 2 CC_DC403DT405:DA429DG431_DD C 403 ? D 431 ? C 405 ? D 429 ? 1 A DT 8 1_555 B DA 6 1_555 A DC 9 1_555 B DG 5 1_555 0.241 0.201 3.190 3.816 7.147 32.426 -0.818 0.205 3.169 12.555 -6.703 33.396 3 CC_DT408DC409:DG425DA426_DD C 408 ? D 426 ? C 409 ? D 425 ? 1 A DC 9 1_555 B DG 5 1_555 A DC 10 1_555 B DG 4 1_555 0.163 -0.129 3.270 -10.372 11.158 27.365 -2.332 -2.247 2.773 21.594 20.073 31.249 4 CC_DC409DC410:DG424DG425_DD C 409 ? D 425 ? C 410 ? D 424 ? 1 A DC 10 1_555 B DG 4 1_555 A DG 12 1_555 B DC 2 1_555 -0.497 1.698 6.457 -2.286 -8.269 74.157 1.902 0.272 6.278 -6.835 1.890 74.581 5 CC_DC410DG412:DC422DG424_DD C 410 ? D 424 ? C 412 ? D 422 ? 1 A DG 12 1_555 B DC 2 1_555 D DC 2 1_555 C DG 12 1_555 -1.423 2.559 6.326 9.551 -9.889 -13.183 4.042 7.076 6.430 33.378 32.238 -19.026 6 CF_DG412DC422:DG412DC422_ED C 412 ? D 422 ? F 422 ? E 412 ? 1 D DC 2 1_555 C DG 12 1_555 D DA 3 1_555 C DT 11 1_555 -0.082 3.478 2.919 7.885 5.465 55.769 3.385 0.502 3.182 5.795 -8.361 56.523 7 FF_DC422DA423:DT411DG412_EE F 422 ? E 412 ? F 423 ? E 411 ? 1 D DA 3 1_555 C DT 11 1_555 D DG 5 1_555 C DC 9 1_555 -0.382 -0.309 7.065 -8.309 11.351 78.129 -0.910 -0.188 6.983 8.939 6.543 79.185 8 FF_DA423DG425:DC409DT411_EE F 423 ? E 411 ? F 425 ? E 409 ? 1 D DG 5 1_555 C DC 9 1_555 D DA 6 1_555 C DT 8 1_555 0.285 -0.380 3.135 3.096 2.336 20.056 -2.072 0.523 3.079 6.628 -8.783 20.424 9 FF_DG425DA426:DT408DC409_EE F 425 ? E 409 ? F 426 ? E 408 ? 1 C DT 4 1_555 D DA 10 1_555 C DT 5 1_555 D DA 9 1_555 -0.166 -0.561 3.035 -2.539 2.327 32.434 -1.373 -0.113 2.993 4.152 4.530 32.611 10 EE_DT404DT405:DA429DA430_FF E 404 ? F 430 ? E 405 ? F 429 ? 1 C DT 5 1_555 D DA 9 1_555 C DC 6 1_555 D DG 8 1_555 0.615 -0.998 2.915 -1.777 -2.362 35.050 -1.335 -1.255 2.940 -3.914 2.945 35.171 11 EE_DT405DC406:DG428DA429_FF E 405 ? F 429 ? E 406 ? F 428 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2EA0 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 2OQ4 _atom_sites.fract_transf_matrix[1][1] 0.009334 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009334 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006066 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O P S ZN # loop_