data_2OQ5 # _entry.id 2OQ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OQ5 pdb_00002oq5 10.2210/pdb2oq5/pdb RCSB RCSB041449 ? ? WWPDB D_1000041449 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-10 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2023-12-27 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Structure summary' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' audit_author 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' struct_site 7 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_audit_author.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OQ5 _pdbx_database_status.recvd_initial_deposition_date 2007-01-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kyrieleis, O.J.P.' 1 ? 'Huber, R.' 2 ? 'Madison, E.L.' 3 ? 'Jacob, U.' 4 ? # _citation.id primary _citation.title 'Crystal structure of the catalytic domain of DESC1, a new member of the type II transmembrane serine proteinase family.' _citation.journal_abbrev 'Febs J.' _citation.journal_volume 274 _citation.page_first 2148 _citation.page_last 2160 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17388811 _citation.pdbx_database_id_DOI 10.1111/j.1742-4658.2007.05756.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kyrieleis, O.J.P.' 1 ? primary 'Huber, R.' 2 ? primary 'Ong, E.' 3 ? primary 'Oehler, R.' 4 ? primary 'Hunter, M.' 5 ? primary 'Madison, E.L.' 6 ? primary 'Jacob, U.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transmembrane protease, serine 11E' 25523.682 1 3.4.21.- ? ? ? 2 non-polymer syn BENZAMIDINE 120.152 1 ? ? ? ? 3 water nat water 18.015 126 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Serine protease DESC1, Transmembrane protease, serine 11E catalytic chain' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKPSKMKRGLRRIIVHEKYKH PSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDA ITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTGI ; _entity_poly.pdbx_seq_one_letter_code_can ;IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKPSKMKRGLRRIIVHEKYKH PSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDA ITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTGI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BENZAMIDINE BEN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 THR n 1 6 GLU n 1 7 VAL n 1 8 GLU n 1 9 GLU n 1 10 GLY n 1 11 GLU n 1 12 TRP n 1 13 PRO n 1 14 TRP n 1 15 GLN n 1 16 ALA n 1 17 SER n 1 18 LEU n 1 19 GLN n 1 20 TRP n 1 21 ASP n 1 22 GLY n 1 23 SER n 1 24 HIS n 1 25 ARG n 1 26 CYS n 1 27 GLY n 1 28 ALA n 1 29 THR n 1 30 LEU n 1 31 ILE n 1 32 ASN n 1 33 ALA n 1 34 THR n 1 35 TRP n 1 36 LEU n 1 37 VAL n 1 38 SER n 1 39 ALA n 1 40 ALA n 1 41 HIS n 1 42 CYS n 1 43 PHE n 1 44 THR n 1 45 THR n 1 46 TYR n 1 47 LYS n 1 48 ASN n 1 49 PRO n 1 50 ALA n 1 51 ARG n 1 52 TRP n 1 53 THR n 1 54 ALA n 1 55 SER n 1 56 PHE n 1 57 GLY n 1 58 VAL n 1 59 THR n 1 60 ILE n 1 61 LYS n 1 62 PRO n 1 63 SER n 1 64 LYS n 1 65 MET n 1 66 LYS n 1 67 ARG n 1 68 GLY n 1 69 LEU n 1 70 ARG n 1 71 ARG n 1 72 ILE n 1 73 ILE n 1 74 VAL n 1 75 HIS n 1 76 GLU n 1 77 LYS n 1 78 TYR n 1 79 LYS n 1 80 HIS n 1 81 PRO n 1 82 SER n 1 83 HIS n 1 84 ASP n 1 85 TYR n 1 86 ASP n 1 87 ILE n 1 88 SER n 1 89 LEU n 1 90 ALA n 1 91 GLU n 1 92 LEU n 1 93 SER n 1 94 SER n 1 95 PRO n 1 96 VAL n 1 97 PRO n 1 98 TYR n 1 99 THR n 1 100 ASN n 1 101 ALA n 1 102 VAL n 1 103 HIS n 1 104 ARG n 1 105 VAL n 1 106 CYS n 1 107 LEU n 1 108 PRO n 1 109 ASP n 1 110 ALA n 1 111 SER n 1 112 TYR n 1 113 GLU n 1 114 PHE n 1 115 GLN n 1 116 PRO n 1 117 GLY n 1 118 ASP n 1 119 VAL n 1 120 MET n 1 121 PHE n 1 122 VAL n 1 123 THR n 1 124 GLY n 1 125 PHE n 1 126 GLY n 1 127 ALA n 1 128 LEU n 1 129 LYS n 1 130 ASN n 1 131 ASP n 1 132 GLY n 1 133 TYR n 1 134 SER n 1 135 GLN n 1 136 ASN n 1 137 HIS n 1 138 LEU n 1 139 ARG n 1 140 GLN n 1 141 ALA n 1 142 GLN n 1 143 VAL n 1 144 THR n 1 145 LEU n 1 146 ILE n 1 147 ASP n 1 148 ALA n 1 149 THR n 1 150 THR n 1 151 CYS n 1 152 ASN n 1 153 GLU n 1 154 PRO n 1 155 GLN n 1 156 ALA n 1 157 TYR n 1 158 ASN n 1 159 ASP n 1 160 ALA n 1 161 ILE n 1 162 THR n 1 163 PRO n 1 164 ARG n 1 165 MET n 1 166 LEU n 1 167 CYS n 1 168 ALA n 1 169 GLY n 1 170 SER n 1 171 LEU n 1 172 GLU n 1 173 GLY n 1 174 LYS n 1 175 THR n 1 176 ASP n 1 177 ALA n 1 178 CYS n 1 179 GLN n 1 180 GLY n 1 181 ASP n 1 182 SER n 1 183 GLY n 1 184 GLY n 1 185 PRO n 1 186 LEU n 1 187 VAL n 1 188 SER n 1 189 SER n 1 190 ASP n 1 191 ALA n 1 192 ARG n 1 193 ASP n 1 194 ILE n 1 195 TRP n 1 196 TYR n 1 197 LEU n 1 198 ALA n 1 199 GLY n 1 200 ILE n 1 201 VAL n 1 202 SER n 1 203 TRP n 1 204 GLY n 1 205 ASP n 1 206 GLU n 1 207 CYS n 1 208 ALA n 1 209 LYS n 1 210 PRO n 1 211 ASN n 1 212 LYS n 1 213 PRO n 1 214 GLY n 1 215 VAL n 1 216 TYR n 1 217 THR n 1 218 ARG n 1 219 VAL n 1 220 THR n 1 221 ALA n 1 222 LEU n 1 223 ARG n 1 224 ASP n 1 225 TRP n 1 226 ILE n 1 227 THR n 1 228 SER n 1 229 LYS n 1 230 THR n 1 231 GLY n 1 232 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'TMPRSS11E, DESC1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus Pichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'SMD 1168' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pPIC9K _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BEN non-polymer . BENZAMIDINE ? 'C7 H8 N2' 120.152 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE A . n A 1 2 VAL 2 17 17 VAL VAL A . n A 1 3 GLY 3 18 18 GLY GLY A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 THR 5 20 20 THR THR A . n A 1 6 GLU 6 21 21 GLU GLU A . n A 1 7 VAL 7 22 22 VAL VAL A . n A 1 8 GLU 8 23 23 GLU GLU A . n A 1 9 GLU 9 24 24 GLU GLU A . n A 1 10 GLY 10 25 25 GLY GLY A . n A 1 11 GLU 11 26 26 GLU GLU A . n A 1 12 TRP 12 27 27 TRP TRP A . n A 1 13 PRO 13 28 28 PRO PRO A . n A 1 14 TRP 14 29 29 TRP TRP A . n A 1 15 GLN 15 30 30 GLN GLN A . n A 1 16 ALA 16 31 31 ALA ALA A . n A 1 17 SER 17 32 32 SER SER A . n A 1 18 LEU 18 33 33 LEU LEU A . n A 1 19 GLN 19 34 34 GLN GLN A . n A 1 20 TRP 20 36 36 TRP TRP A . n A 1 21 ASP 21 37 37 ASP ASP A . n A 1 22 GLY 22 38 38 GLY GLY A . n A 1 23 SER 23 39 39 SER SER A . n A 1 24 HIS 24 40 40 HIS HIS A . n A 1 25 ARG 25 41 41 ARG ARG A . n A 1 26 CYS 26 42 42 CYS CYS A . n A 1 27 GLY 27 43 43 GLY GLY A . n A 1 28 ALA 28 44 44 ALA ALA A . n A 1 29 THR 29 45 45 THR THR A . n A 1 30 LEU 30 46 46 LEU LEU A . n A 1 31 ILE 31 47 47 ILE ILE A . n A 1 32 ASN 32 48 48 ASN ASN A . n A 1 33 ALA 33 49 49 ALA ALA A . n A 1 34 THR 34 50 50 THR THR A . n A 1 35 TRP 35 51 51 TRP TRP A . n A 1 36 LEU 36 52 52 LEU LEU A . n A 1 37 VAL 37 53 53 VAL VAL A . n A 1 38 SER 38 54 54 SER SER A . n A 1 39 ALA 39 55 55 ALA ALA A . n A 1 40 ALA 40 56 56 ALA ALA A . n A 1 41 HIS 41 57 57 HIS HIS A . n A 1 42 CYS 42 58 58 CYS CYS A . n A 1 43 PHE 43 60 60 PHE PHE A . n A 1 44 THR 44 61 61 THR THR A . n A 1 45 THR 45 62 62 THR THR A . n A 1 46 TYR 46 63 63 TYR TYR A . n A 1 47 LYS 47 64 64 LYS LYS A . n A 1 48 ASN 48 64 64 ASN ASN A A n A 1 49 PRO 49 64 64 PRO PRO A B n A 1 50 ALA 50 64 64 ALA ALA A C n A 1 51 ARG 51 64 64 ARG ARG A D n A 1 52 TRP 52 64 64 TRP TRP A E n A 1 53 THR 53 65 65 THR THR A . n A 1 54 ALA 54 66 66 ALA ALA A . n A 1 55 SER 55 67 67 SER SER A . n A 1 56 PHE 56 68 68 PHE PHE A . n A 1 57 GLY 57 69 69 GLY GLY A . n A 1 58 VAL 58 69 69 VAL VAL A A n A 1 59 THR 59 74 74 THR THR A . n A 1 60 ILE 60 75 75 ILE ILE A . n A 1 61 LYS 61 76 76 LYS LYS A . n A 1 62 PRO 62 77 77 PRO PRO A . n A 1 63 SER 63 78 78 SER SER A . n A 1 64 LYS 64 79 79 LYS LYS A . n A 1 65 MET 65 80 80 MET MET A . n A 1 66 LYS 66 81 81 LYS LYS A . n A 1 67 ARG 67 82 82 ARG ARG A . n A 1 68 GLY 68 83 83 GLY GLY A . n A 1 69 LEU 69 85 85 LEU LEU A . n A 1 70 ARG 70 86 86 ARG ARG A . n A 1 71 ARG 71 87 87 ARG ARG A . n A 1 72 ILE 72 88 88 ILE ILE A . n A 1 73 ILE 73 89 89 ILE ILE A . n A 1 74 VAL 74 90 90 VAL VAL A . n A 1 75 HIS 75 91 91 HIS HIS A . n A 1 76 GLU 76 92 92 GLU GLU A . n A 1 77 LYS 77 93 93 LYS LYS A . n A 1 78 TYR 78 94 94 TYR TYR A . n A 1 79 LYS 79 95 95 LYS LYS A . n A 1 80 HIS 80 96 96 HIS HIS A . n A 1 81 PRO 81 97 97 PRO CPR A . n A 1 82 SER 82 98 98 SER SER A . n A 1 83 HIS 83 99 99 HIS HIS A . n A 1 84 ASP 84 100 100 ASP ASP A . n A 1 85 TYR 85 101 101 TYR TYR A . n A 1 86 ASP 86 102 102 ASP ASP A . n A 1 87 ILE 87 103 103 ILE ILE A . n A 1 88 SER 88 104 104 SER SER A . n A 1 89 LEU 89 105 105 LEU LEU A . n A 1 90 ALA 90 106 106 ALA ALA A . n A 1 91 GLU 91 107 107 GLU GLU A . n A 1 92 LEU 92 108 108 LEU LEU A . n A 1 93 SER 93 109 109 SER SER A . n A 1 94 SER 94 110 110 SER SER A . n A 1 95 PRO 95 111 111 PRO PRO A . n A 1 96 VAL 96 112 112 VAL VAL A . n A 1 97 PRO 97 113 113 PRO PRO A . n A 1 98 TYR 98 114 114 TYR TYR A . n A 1 99 THR 99 115 115 THR THR A . n A 1 100 ASN 100 116 116 ASN ASN A . n A 1 101 ALA 101 117 117 ALA ALA A . n A 1 102 VAL 102 118 118 VAL VAL A . n A 1 103 HIS 103 119 119 HIS HIS A . n A 1 104 ARG 104 120 120 ARG ARG A . n A 1 105 VAL 105 121 121 VAL VAL A . n A 1 106 CYS 106 122 122 CYS CYS A . n A 1 107 LEU 107 123 123 LEU LEU A . n A 1 108 PRO 108 124 124 PRO PRO A . n A 1 109 ASP 109 125 125 ASP ASP A . n A 1 110 ALA 110 126 126 ALA ALA A . n A 1 111 SER 111 127 127 SER SER A . n A 1 112 TYR 112 128 128 TYR TYR A . n A 1 113 GLU 113 129 129 GLU GLU A . n A 1 114 PHE 114 130 130 PHE PHE A . n A 1 115 GLN 115 131 131 GLN GLN A . n A 1 116 PRO 116 132 132 PRO PRO A . n A 1 117 GLY 117 133 133 GLY GLY A . n A 1 118 ASP 118 134 134 ASP ASP A . n A 1 119 VAL 119 135 135 VAL VAL A . n A 1 120 MET 120 136 136 MET MET A . n A 1 121 PHE 121 137 137 PHE PHE A . n A 1 122 VAL 122 138 138 VAL VAL A . n A 1 123 THR 123 139 139 THR THR A . n A 1 124 GLY 124 140 140 GLY GLY A . n A 1 125 PHE 125 141 141 PHE PHE A . n A 1 126 GLY 126 142 142 GLY GLY A . n A 1 127 ALA 127 143 143 ALA ALA A . n A 1 128 LEU 128 144 144 LEU LEU A . n A 1 129 LYS 129 145 145 LYS LYS A . n A 1 130 ASN 130 146 146 ASN ASN A . n A 1 131 ASP 131 147 147 ASP ASP A . n A 1 132 GLY 132 148 148 GLY GLY A . n A 1 133 TYR 133 149 149 TYR TYR A . n A 1 134 SER 134 151 151 SER SER A . n A 1 135 GLN 135 152 152 GLN GLN A . n A 1 136 ASN 136 153 153 ASN ASN A . n A 1 137 HIS 137 154 154 HIS HIS A . n A 1 138 LEU 138 155 155 LEU LEU A . n A 1 139 ARG 139 156 156 ARG ARG A . n A 1 140 GLN 140 157 157 GLN GLN A . n A 1 141 ALA 141 158 158 ALA ALA A . n A 1 142 GLN 142 159 159 GLN GLN A . n A 1 143 VAL 143 160 160 VAL VAL A . n A 1 144 THR 144 161 161 THR THR A . n A 1 145 LEU 145 162 162 LEU LEU A . n A 1 146 ILE 146 163 163 ILE ILE A . n A 1 147 ASP 147 164 164 ASP ASP A . n A 1 148 ALA 148 165 165 ALA ALA A . n A 1 149 THR 149 166 166 THR THR A . n A 1 150 THR 150 167 167 THR THR A . n A 1 151 CYS 151 168 168 CYS CYS A . n A 1 152 ASN 152 169 169 ASN ASN A . n A 1 153 GLU 153 170 170 GLU GLU A . n A 1 154 PRO 154 170 170 PRO PRO A A n A 1 155 GLN 155 170 170 GLN GLN A B n A 1 156 ALA 156 171 171 ALA ALA A . n A 1 157 TYR 157 172 172 TYR TYR A . n A 1 158 ASN 158 173 173 ASN ASN A . n A 1 159 ASP 159 174 174 ASP ASP A . n A 1 160 ALA 160 175 175 ALA ALA A . n A 1 161 ILE 161 176 176 ILE ILE A . n A 1 162 THR 162 177 177 THR THR A . n A 1 163 PRO 163 178 178 PRO PRO A . n A 1 164 ARG 164 179 179 ARG ARG A . n A 1 165 MET 165 180 180 MET MET A . n A 1 166 LEU 166 181 181 LEU LEU A . n A 1 167 CYS 167 182 182 CYS CYS A . n A 1 168 ALA 168 183 183 ALA ALA A . n A 1 169 GLY 169 184 184 GLY GLY A . n A 1 170 SER 170 184 184 SER SER A A n A 1 171 LEU 171 184 184 LEU LEU A B n A 1 172 GLU 172 185 185 GLU GLU A . n A 1 173 GLY 173 186 186 GLY GLY A . n A 1 174 LYS 174 187 187 LYS LYS A . n A 1 175 THR 175 188 188 THR THR A . n A 1 176 ASP 176 189 189 ASP ASP A . n A 1 177 ALA 177 190 190 ALA ALA A . n A 1 178 CYS 178 191 191 CYS CYS A . n A 1 179 GLN 179 192 192 GLN GLN A . n A 1 180 GLY 180 193 193 GLY GLY A . n A 1 181 ASP 181 194 194 ASP ASP A . n A 1 182 SER 182 195 195 SER SER A . n A 1 183 GLY 183 196 196 GLY GLY A . n A 1 184 GLY 184 197 197 GLY GLY A . n A 1 185 PRO 185 198 198 PRO PRO A . n A 1 186 LEU 186 199 199 LEU LEU A . n A 1 187 VAL 187 200 200 VAL VAL A . n A 1 188 SER 188 201 201 SER SER A . n A 1 189 SER 189 202 202 SER SER A . n A 1 190 ASP 190 203 203 ASP ASP A . n A 1 191 ALA 191 204 204 ALA ALA A . n A 1 192 ARG 192 205 205 ARG ARG A . n A 1 193 ASP 193 205 205 ASP ASP A A n A 1 194 ILE 194 206 206 ILE ILE A . n A 1 195 TRP 195 207 207 TRP TRP A . n A 1 196 TYR 196 208 208 TYR TYR A . n A 1 197 LEU 197 209 209 LEU LEU A . n A 1 198 ALA 198 210 210 ALA ALA A . n A 1 199 GLY 199 211 211 GLY GLY A . n A 1 200 ILE 200 212 212 ILE ILE A . n A 1 201 VAL 201 213 213 VAL VAL A . n A 1 202 SER 202 214 214 SER SER A . n A 1 203 TRP 203 215 215 TRP TRP A . n A 1 204 GLY 204 216 216 GLY GLY A . n A 1 205 ASP 205 217 217 ASP ASP A . n A 1 206 GLU 206 218 218 GLU GLU A . n A 1 207 CYS 207 219 219 CYS CYS A . n A 1 208 ALA 208 220 220 ALA ALA A . n A 1 209 LYS 209 221 221 LYS LYS A . n A 1 210 PRO 210 222 222 PRO PRO A . n A 1 211 ASN 211 223 223 ASN ASN A . n A 1 212 LYS 212 224 224 LYS LYS A . n A 1 213 PRO 213 225 225 PRO PRO A . n A 1 214 GLY 214 226 226 GLY GLY A . n A 1 215 VAL 215 227 227 VAL VAL A . n A 1 216 TYR 216 228 228 TYR TYR A . n A 1 217 THR 217 229 229 THR THR A . n A 1 218 ARG 218 230 230 ARG ARG A . n A 1 219 VAL 219 231 231 VAL VAL A . n A 1 220 THR 220 232 232 THR THR A . n A 1 221 ALA 221 233 233 ALA ALA A . n A 1 222 LEU 222 234 234 LEU LEU A . n A 1 223 ARG 223 235 235 ARG ARG A . n A 1 224 ASP 224 236 236 ASP ASP A . n A 1 225 TRP 225 237 237 TRP TRP A . n A 1 226 ILE 226 238 238 ILE ILE A . n A 1 227 THR 227 239 239 THR THR A . n A 1 228 SER 228 240 240 SER SER A . n A 1 229 LYS 229 241 241 LYS LYS A . n A 1 230 THR 230 242 242 THR THR A . n A 1 231 GLY 231 243 243 GLY GLY A . n A 1 232 ILE 232 244 244 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN 1 245 1 BEN BEN A . C 3 HOH 1 246 1 HOH WAT A . C 3 HOH 2 247 2 HOH WAT A . C 3 HOH 3 248 3 HOH WAT A . C 3 HOH 4 249 4 HOH WAT A . C 3 HOH 5 250 5 HOH WAT A . C 3 HOH 6 251 7 HOH WAT A . C 3 HOH 7 252 8 HOH WAT A . C 3 HOH 8 253 9 HOH WAT A . C 3 HOH 9 254 10 HOH WAT A . C 3 HOH 10 255 11 HOH WAT A . C 3 HOH 11 256 12 HOH WAT A . C 3 HOH 12 257 13 HOH WAT A . C 3 HOH 13 258 14 HOH WAT A . C 3 HOH 14 259 15 HOH WAT A . C 3 HOH 15 260 16 HOH WAT A . C 3 HOH 16 261 17 HOH WAT A . C 3 HOH 17 262 18 HOH WAT A . C 3 HOH 18 263 19 HOH WAT A . C 3 HOH 19 264 20 HOH WAT A . C 3 HOH 20 265 22 HOH WAT A . C 3 HOH 21 266 23 HOH WAT A . C 3 HOH 22 267 24 HOH WAT A . C 3 HOH 23 268 25 HOH WAT A . C 3 HOH 24 269 26 HOH WAT A . C 3 HOH 25 270 27 HOH WAT A . C 3 HOH 26 271 28 HOH WAT A . C 3 HOH 27 272 29 HOH WAT A . C 3 HOH 28 273 30 HOH WAT A . C 3 HOH 29 274 31 HOH WAT A . C 3 HOH 30 275 32 HOH WAT A . C 3 HOH 31 276 33 HOH WAT A . C 3 HOH 32 277 34 HOH WAT A . C 3 HOH 33 278 35 HOH WAT A . C 3 HOH 34 279 36 HOH WAT A . C 3 HOH 35 280 37 HOH WAT A . C 3 HOH 36 281 38 HOH WAT A . C 3 HOH 37 282 39 HOH WAT A . C 3 HOH 38 283 40 HOH WAT A . C 3 HOH 39 284 41 HOH WAT A . C 3 HOH 40 285 43 HOH WAT A . C 3 HOH 41 286 44 HOH WAT A . C 3 HOH 42 287 45 HOH WAT A . C 3 HOH 43 288 46 HOH WAT A . C 3 HOH 44 289 47 HOH WAT A . C 3 HOH 45 290 48 HOH WAT A . C 3 HOH 46 291 49 HOH WAT A . C 3 HOH 47 292 50 HOH WAT A . C 3 HOH 48 293 51 HOH WAT A . C 3 HOH 49 294 52 HOH WAT A . C 3 HOH 50 295 53 HOH WAT A . C 3 HOH 51 296 54 HOH WAT A . C 3 HOH 52 297 55 HOH WAT A . C 3 HOH 53 298 56 HOH WAT A . C 3 HOH 54 299 57 HOH WAT A . C 3 HOH 55 300 58 HOH WAT A . C 3 HOH 56 301 59 HOH WAT A . C 3 HOH 57 302 60 HOH WAT A . C 3 HOH 58 303 61 HOH WAT A . C 3 HOH 59 304 62 HOH WAT A . C 3 HOH 60 305 63 HOH WAT A . C 3 HOH 61 306 64 HOH WAT A . C 3 HOH 62 307 65 HOH WAT A . C 3 HOH 63 308 66 HOH WAT A . C 3 HOH 64 309 67 HOH WAT A . C 3 HOH 65 310 68 HOH WAT A . C 3 HOH 66 311 69 HOH WAT A . C 3 HOH 67 312 70 HOH WAT A . C 3 HOH 68 313 71 HOH WAT A . C 3 HOH 69 314 72 HOH WAT A . C 3 HOH 70 315 74 HOH WAT A . C 3 HOH 71 316 75 HOH WAT A . C 3 HOH 72 317 76 HOH WAT A . C 3 HOH 73 318 77 HOH WAT A . C 3 HOH 74 319 78 HOH WAT A . C 3 HOH 75 320 79 HOH WAT A . C 3 HOH 76 321 80 HOH WAT A . C 3 HOH 77 322 81 HOH WAT A . C 3 HOH 78 323 82 HOH WAT A . C 3 HOH 79 324 83 HOH WAT A . C 3 HOH 80 325 84 HOH WAT A . C 3 HOH 81 326 85 HOH WAT A . C 3 HOH 82 327 86 HOH WAT A . C 3 HOH 83 328 87 HOH WAT A . C 3 HOH 84 329 88 HOH WAT A . C 3 HOH 85 330 89 HOH WAT A . C 3 HOH 86 331 90 HOH WAT A . C 3 HOH 87 332 91 HOH WAT A . C 3 HOH 88 333 92 HOH WAT A . C 3 HOH 89 334 93 HOH WAT A . C 3 HOH 90 335 94 HOH WAT A . C 3 HOH 91 336 95 HOH WAT A . C 3 HOH 92 337 96 HOH WAT A . C 3 HOH 93 338 97 HOH WAT A . C 3 HOH 94 339 98 HOH WAT A . C 3 HOH 95 340 99 HOH WAT A . C 3 HOH 96 341 100 HOH WAT A . C 3 HOH 97 342 101 HOH WAT A . C 3 HOH 98 343 102 HOH WAT A . C 3 HOH 99 344 103 HOH WAT A . C 3 HOH 100 345 104 HOH WAT A . C 3 HOH 101 346 105 HOH WAT A . C 3 HOH 102 347 106 HOH WAT A . C 3 HOH 103 348 107 HOH WAT A . C 3 HOH 104 349 108 HOH WAT A . C 3 HOH 105 350 109 HOH WAT A . C 3 HOH 106 351 110 HOH WAT A . C 3 HOH 107 352 111 HOH WAT A . C 3 HOH 108 353 112 HOH WAT A . C 3 HOH 109 354 113 HOH WAT A . C 3 HOH 110 355 114 HOH WAT A . C 3 HOH 111 356 115 HOH WAT A . C 3 HOH 112 357 116 HOH WAT A . C 3 HOH 113 358 117 HOH WAT A . C 3 HOH 114 359 118 HOH WAT A . C 3 HOH 115 360 119 HOH WAT A . C 3 HOH 116 361 120 HOH WAT A . C 3 HOH 117 362 121 HOH WAT A . C 3 HOH 118 363 122 HOH WAT A . C 3 HOH 119 364 123 HOH WAT A . C 3 HOH 120 365 124 HOH WAT A . C 3 HOH 121 366 125 HOH WAT A . C 3 HOH 122 367 126 HOH WAT A . C 3 HOH 123 368 127 HOH WAT A . C 3 HOH 124 369 128 HOH WAT A . C 3 HOH 125 370 129 HOH WAT A . C 3 HOH 126 371 130 HOH WAT A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 MAR345 'data collection' 345DTB ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 AMoRE phasing . ? 5 # _cell.entry_id 2OQ5 _cell.length_a 47.900 _cell.length_b 70.200 _cell.length_c 80.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OQ5 _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2OQ5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.64 _exptl_crystal.density_percent_sol 53.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1 M Tris , 8 % (m/w) PEG 8000 , pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2000-02-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2OQ5 _reflns.observed_criterion_sigma_I 1.6 _reflns.observed_criterion_sigma_F 1.6 _reflns.d_resolution_low 28 _reflns.d_resolution_high 1.6 _reflns.number_obs 31409 _reflns.number_all 36411 _reflns.percent_possible_obs 86.3 _reflns.pdbx_Rmerge_I_obs 0.79 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 25.3 _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 36411 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OQ5 _refine.ls_number_reflns_obs 31409 _refine.ls_number_reflns_all 36411 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1104423.05 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF 1104423.05 _refine.ls_d_res_low 28 _refine.ls_d_res_high 1.61 _refine.ls_percent_reflns_obs 87.1 _refine.ls_R_factor_obs 0.21 _refine.ls_R_factor_all 0.21 _refine.ls_R_factor_R_work 0.21 _refine.ls_R_factor_R_free 0.224 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1556 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.3 _refine.aniso_B[1][1] -1.00 _refine.aniso_B[2][2] 0.20 _refine.aniso_B[3][3] 0.79 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.385118 _refine.solvent_model_param_bsol 50.3368 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model Enteropeptidase _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2OQ5 _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.24 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.22 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1795 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 1930 _refine_hist.d_res_high 1.61 _refine_hist.d_res_low 28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.09 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.76 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.63 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.13 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.63 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.61 _refine_ls_shell.d_res_low 1.70 _refine_ls_shell.number_reflns_R_work 3407 _refine_ls_shell.R_factor_R_work 0.503 _refine_ls_shell.percent_reflns_obs 60.3 _refine_ls_shell.R_factor_R_free 0.472 _refine_ls_shell.R_factor_R_free_error 0.035 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 185 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 ben.par ben.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2OQ5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2OQ5 _struct.title 'Crystal structure of DESC1, a new member of the type II transmembrane serine proteinases family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OQ5 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TM11E_HUMAN _struct_ref.pdbx_db_accession Q9UL52 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKPSKMKRGLRRIIVHEKYKH PSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDA ITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTGI ; _struct_ref.pdbx_align_begin 192 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2OQ5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 232 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UL52 _struct_ref_seq.db_align_beg 192 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 423 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 16 _struct_ref_seq.pdbx_auth_seq_align_end 244 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 39 ? THR A 44 ? ALA A 55 THR A 61 5 ? 6 HELX_P HELX_P2 2 ASN A 48 A ALA A 50 C ASN A 64 ALA A 64 5 ? 3 HELX_P HELX_P3 3 ASP A 147 ? ASN A 152 ? ASP A 164 ASN A 169 1 ? 6 HELX_P HELX_P4 4 LEU A 222 ? GLY A 231 ? LEU A 234 GLY A 243 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 151 SG ? ? ? 1_555 A CYS 167 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf3 disulf ? ? A CYS 178 SG ? ? ? 1_555 A CYS 207 SG ? ? A CYS 191 A CYS 219 1_555 ? ? ? ? ? ? ? 2.031 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 80 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 96 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 81 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 97 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.25 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 5 ? GLU A 6 ? THR A 20 GLU A 21 A 2 ARG A 139 ? ILE A 146 ? ARG A 156 ILE A 163 A 3 MET A 165 ? GLY A 169 ? MET A 180 GLY A 184 A 4 GLY A 214 ? ARG A 218 ? GLY A 226 ARG A 230 A 5 TRP A 195 ? TRP A 203 ? TRP A 207 TRP A 215 A 6 PRO A 185 ? SER A 189 ? PRO A 198 SER A 202 A 7 VAL A 119 ? GLY A 124 ? VAL A 135 GLY A 140 A 8 ARG A 139 ? ILE A 146 ? ARG A 156 ILE A 163 B 1 GLN A 15 ? TRP A 20 ? GLN A 30 TRP A 36 B 2 SER A 23 ? ASN A 32 ? SER A 39 ASN A 48 B 3 TRP A 35 ? SER A 38 ? TRP A 51 SER A 54 B 4 SER A 88 ? LEU A 92 ? SER A 104 LEU A 108 B 5 MET A 65 ? VAL A 74 ? MET A 80 VAL A 90 B 6 TRP A 52 E PHE A 56 ? TRP A 64 PHE A 68 B 7 GLN A 15 ? TRP A 20 ? GLN A 30 TRP A 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 5 ? N THR A 20 O GLN A 140 ? O GLN A 157 A 2 3 N ILE A 146 ? N ILE A 163 O CYS A 167 ? O CYS A 182 A 3 4 N LEU A 166 ? N LEU A 181 O TYR A 216 ? O TYR A 228 A 4 5 O VAL A 215 ? O VAL A 227 N TRP A 203 ? N TRP A 215 A 5 6 O TYR A 196 ? O TYR A 208 N SER A 188 ? N SER A 201 A 6 7 O VAL A 187 ? O VAL A 200 N PHE A 121 ? N PHE A 137 A 7 8 N MET A 120 ? N MET A 136 O VAL A 143 ? O VAL A 160 B 1 2 N LEU A 18 ? N LEU A 33 O CYS A 26 ? O CYS A 42 B 2 3 N THR A 29 ? N THR A 45 O VAL A 37 ? O VAL A 53 B 3 4 N SER A 38 ? N SER A 54 O SER A 88 ? O SER A 104 B 4 5 O LEU A 89 ? O LEU A 105 N ILE A 73 ? N ILE A 89 B 5 6 O ARG A 67 ? O ARG A 82 N ALA A 54 ? N ALA A 66 B 6 7 O THR A 53 ? O THR A 65 N GLN A 19 ? N GLN A 34 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BEN _struct_site.pdbx_auth_seq_id 245 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE BEN A 245' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASP A 176 ? ASP A 189 . ? 1_555 ? 2 AC1 8 ALA A 177 ? ALA A 190 . ? 1_555 ? 3 AC1 8 GLN A 179 ? GLN A 192 . ? 1_555 ? 4 AC1 8 SER A 182 ? SER A 195 . ? 1_555 ? 5 AC1 8 TRP A 203 ? TRP A 215 . ? 1_555 ? 6 AC1 8 GLU A 206 ? GLU A 218 . ? 1_555 ? 7 AC1 8 GLY A 214 ? GLY A 226 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 254 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 76 ? ? -57.31 -90.86 2 1 ALA A 171 ? ? -95.13 -115.58 3 1 ASN A 173 ? ? 39.31 66.70 4 1 LYS A 187 ? ? 51.74 -56.73 5 1 GLU A 218 ? ? 59.42 -138.09 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BEN C1 C Y N 74 BEN C2 C Y N 75 BEN C3 C Y N 76 BEN C4 C Y N 77 BEN C5 C Y N 78 BEN C6 C Y N 79 BEN C C N N 80 BEN N1 N N N 81 BEN N2 N N N 82 BEN H2 H N N 83 BEN H3 H N N 84 BEN H4 H N N 85 BEN H5 H N N 86 BEN H6 H N N 87 BEN HN1 H N N 88 BEN HN21 H N N 89 BEN HN22 H N N 90 CYS N N N N 91 CYS CA C N R 92 CYS C C N N 93 CYS O O N N 94 CYS CB C N N 95 CYS SG S N N 96 CYS OXT O N N 97 CYS H H N N 98 CYS H2 H N N 99 CYS HA H N N 100 CYS HB2 H N N 101 CYS HB3 H N N 102 CYS HG H N N 103 CYS HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLU N N N N 125 GLU CA C N S 126 GLU C C N N 127 GLU O O N N 128 GLU CB C N N 129 GLU CG C N N 130 GLU CD C N N 131 GLU OE1 O N N 132 GLU OE2 O N N 133 GLU OXT O N N 134 GLU H H N N 135 GLU H2 H N N 136 GLU HA H N N 137 GLU HB2 H N N 138 GLU HB3 H N N 139 GLU HG2 H N N 140 GLU HG3 H N N 141 GLU HE2 H N N 142 GLU HXT H N N 143 GLY N N N N 144 GLY CA C N N 145 GLY C C N N 146 GLY O O N N 147 GLY OXT O N N 148 GLY H H N N 149 GLY H2 H N N 150 GLY HA2 H N N 151 GLY HA3 H N N 152 GLY HXT H N N 153 HIS N N N N 154 HIS CA C N S 155 HIS C C N N 156 HIS O O N N 157 HIS CB C N N 158 HIS CG C Y N 159 HIS ND1 N Y N 160 HIS CD2 C Y N 161 HIS CE1 C Y N 162 HIS NE2 N Y N 163 HIS OXT O N N 164 HIS H H N N 165 HIS H2 H N N 166 HIS HA H N N 167 HIS HB2 H N N 168 HIS HB3 H N N 169 HIS HD1 H N N 170 HIS HD2 H N N 171 HIS HE1 H N N 172 HIS HE2 H N N 173 HIS HXT H N N 174 HOH O O N N 175 HOH H1 H N N 176 HOH H2 H N N 177 ILE N N N N 178 ILE CA C N S 179 ILE C C N N 180 ILE O O N N 181 ILE CB C N S 182 ILE CG1 C N N 183 ILE CG2 C N N 184 ILE CD1 C N N 185 ILE OXT O N N 186 ILE H H N N 187 ILE H2 H N N 188 ILE HA H N N 189 ILE HB H N N 190 ILE HG12 H N N 191 ILE HG13 H N N 192 ILE HG21 H N N 193 ILE HG22 H N N 194 ILE HG23 H N N 195 ILE HD11 H N N 196 ILE HD12 H N N 197 ILE HD13 H N N 198 ILE HXT H N N 199 LEU N N N N 200 LEU CA C N S 201 LEU C C N N 202 LEU O O N N 203 LEU CB C N N 204 LEU CG C N N 205 LEU CD1 C N N 206 LEU CD2 C N N 207 LEU OXT O N N 208 LEU H H N N 209 LEU H2 H N N 210 LEU HA H N N 211 LEU HB2 H N N 212 LEU HB3 H N N 213 LEU HG H N N 214 LEU HD11 H N N 215 LEU HD12 H N N 216 LEU HD13 H N N 217 LEU HD21 H N N 218 LEU HD22 H N N 219 LEU HD23 H N N 220 LEU HXT H N N 221 LYS N N N N 222 LYS CA C N S 223 LYS C C N N 224 LYS O O N N 225 LYS CB C N N 226 LYS CG C N N 227 LYS CD C N N 228 LYS CE C N N 229 LYS NZ N N N 230 LYS OXT O N N 231 LYS H H N N 232 LYS H2 H N N 233 LYS HA H N N 234 LYS HB2 H N N 235 LYS HB3 H N N 236 LYS HG2 H N N 237 LYS HG3 H N N 238 LYS HD2 H N N 239 LYS HD3 H N N 240 LYS HE2 H N N 241 LYS HE3 H N N 242 LYS HZ1 H N N 243 LYS HZ2 H N N 244 LYS HZ3 H N N 245 LYS HXT H N N 246 MET N N N N 247 MET CA C N S 248 MET C C N N 249 MET O O N N 250 MET CB C N N 251 MET CG C N N 252 MET SD S N N 253 MET CE C N N 254 MET OXT O N N 255 MET H H N N 256 MET H2 H N N 257 MET HA H N N 258 MET HB2 H N N 259 MET HB3 H N N 260 MET HG2 H N N 261 MET HG3 H N N 262 MET HE1 H N N 263 MET HE2 H N N 264 MET HE3 H N N 265 MET HXT H N N 266 PHE N N N N 267 PHE CA C N S 268 PHE C C N N 269 PHE O O N N 270 PHE CB C N N 271 PHE CG C Y N 272 PHE CD1 C Y N 273 PHE CD2 C Y N 274 PHE CE1 C Y N 275 PHE CE2 C Y N 276 PHE CZ C Y N 277 PHE OXT O N N 278 PHE H H N N 279 PHE H2 H N N 280 PHE HA H N N 281 PHE HB2 H N N 282 PHE HB3 H N N 283 PHE HD1 H N N 284 PHE HD2 H N N 285 PHE HE1 H N N 286 PHE HE2 H N N 287 PHE HZ H N N 288 PHE HXT H N N 289 PRO N N N N 290 PRO CA C N S 291 PRO C C N N 292 PRO O O N N 293 PRO CB C N N 294 PRO CG C N N 295 PRO CD C N N 296 PRO OXT O N N 297 PRO H H N N 298 PRO HA H N N 299 PRO HB2 H N N 300 PRO HB3 H N N 301 PRO HG2 H N N 302 PRO HG3 H N N 303 PRO HD2 H N N 304 PRO HD3 H N N 305 PRO HXT H N N 306 SER N N N N 307 SER CA C N S 308 SER C C N N 309 SER O O N N 310 SER CB C N N 311 SER OG O N N 312 SER OXT O N N 313 SER H H N N 314 SER H2 H N N 315 SER HA H N N 316 SER HB2 H N N 317 SER HB3 H N N 318 SER HG H N N 319 SER HXT H N N 320 THR N N N N 321 THR CA C N S 322 THR C C N N 323 THR O O N N 324 THR CB C N R 325 THR OG1 O N N 326 THR CG2 C N N 327 THR OXT O N N 328 THR H H N N 329 THR H2 H N N 330 THR HA H N N 331 THR HB H N N 332 THR HG1 H N N 333 THR HG21 H N N 334 THR HG22 H N N 335 THR HG23 H N N 336 THR HXT H N N 337 TRP N N N N 338 TRP CA C N S 339 TRP C C N N 340 TRP O O N N 341 TRP CB C N N 342 TRP CG C Y N 343 TRP CD1 C Y N 344 TRP CD2 C Y N 345 TRP NE1 N Y N 346 TRP CE2 C Y N 347 TRP CE3 C Y N 348 TRP CZ2 C Y N 349 TRP CZ3 C Y N 350 TRP CH2 C Y N 351 TRP OXT O N N 352 TRP H H N N 353 TRP H2 H N N 354 TRP HA H N N 355 TRP HB2 H N N 356 TRP HB3 H N N 357 TRP HD1 H N N 358 TRP HE1 H N N 359 TRP HE3 H N N 360 TRP HZ2 H N N 361 TRP HZ3 H N N 362 TRP HH2 H N N 363 TRP HXT H N N 364 TYR N N N N 365 TYR CA C N S 366 TYR C C N N 367 TYR O O N N 368 TYR CB C N N 369 TYR CG C Y N 370 TYR CD1 C Y N 371 TYR CD2 C Y N 372 TYR CE1 C Y N 373 TYR CE2 C Y N 374 TYR CZ C Y N 375 TYR OH O N N 376 TYR OXT O N N 377 TYR H H N N 378 TYR H2 H N N 379 TYR HA H N N 380 TYR HB2 H N N 381 TYR HB3 H N N 382 TYR HD1 H N N 383 TYR HD2 H N N 384 TYR HE1 H N N 385 TYR HE2 H N N 386 TYR HH H N N 387 TYR HXT H N N 388 VAL N N N N 389 VAL CA C N S 390 VAL C C N N 391 VAL O O N N 392 VAL CB C N N 393 VAL CG1 C N N 394 VAL CG2 C N N 395 VAL OXT O N N 396 VAL H H N N 397 VAL H2 H N N 398 VAL HA H N N 399 VAL HB H N N 400 VAL HG11 H N N 401 VAL HG12 H N N 402 VAL HG13 H N N 403 VAL HG21 H N N 404 VAL HG22 H N N 405 VAL HG23 H N N 406 VAL HXT H N N 407 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BEN C1 C2 doub Y N 70 BEN C1 C6 sing Y N 71 BEN C1 C sing N N 72 BEN C2 C3 sing Y N 73 BEN C2 H2 sing N N 74 BEN C3 C4 doub Y N 75 BEN C3 H3 sing N N 76 BEN C4 C5 sing Y N 77 BEN C4 H4 sing N N 78 BEN C5 C6 doub Y N 79 BEN C5 H5 sing N N 80 BEN C6 H6 sing N N 81 BEN C N1 doub N E 82 BEN C N2 sing N N 83 BEN N1 HN1 sing N N 84 BEN N2 HN21 sing N N 85 BEN N2 HN22 sing N N 86 CYS N CA sing N N 87 CYS N H sing N N 88 CYS N H2 sing N N 89 CYS CA C sing N N 90 CYS CA CB sing N N 91 CYS CA HA sing N N 92 CYS C O doub N N 93 CYS C OXT sing N N 94 CYS CB SG sing N N 95 CYS CB HB2 sing N N 96 CYS CB HB3 sing N N 97 CYS SG HG sing N N 98 CYS OXT HXT sing N N 99 GLN N CA sing N N 100 GLN N H sing N N 101 GLN N H2 sing N N 102 GLN CA C sing N N 103 GLN CA CB sing N N 104 GLN CA HA sing N N 105 GLN C O doub N N 106 GLN C OXT sing N N 107 GLN CB CG sing N N 108 GLN CB HB2 sing N N 109 GLN CB HB3 sing N N 110 GLN CG CD sing N N 111 GLN CG HG2 sing N N 112 GLN CG HG3 sing N N 113 GLN CD OE1 doub N N 114 GLN CD NE2 sing N N 115 GLN NE2 HE21 sing N N 116 GLN NE2 HE22 sing N N 117 GLN OXT HXT sing N N 118 GLU N CA sing N N 119 GLU N H sing N N 120 GLU N H2 sing N N 121 GLU CA C sing N N 122 GLU CA CB sing N N 123 GLU CA HA sing N N 124 GLU C O doub N N 125 GLU C OXT sing N N 126 GLU CB CG sing N N 127 GLU CB HB2 sing N N 128 GLU CB HB3 sing N N 129 GLU CG CD sing N N 130 GLU CG HG2 sing N N 131 GLU CG HG3 sing N N 132 GLU CD OE1 doub N N 133 GLU CD OE2 sing N N 134 GLU OE2 HE2 sing N N 135 GLU OXT HXT sing N N 136 GLY N CA sing N N 137 GLY N H sing N N 138 GLY N H2 sing N N 139 GLY CA C sing N N 140 GLY CA HA2 sing N N 141 GLY CA HA3 sing N N 142 GLY C O doub N N 143 GLY C OXT sing N N 144 GLY OXT HXT sing N N 145 HIS N CA sing N N 146 HIS N H sing N N 147 HIS N H2 sing N N 148 HIS CA C sing N N 149 HIS CA CB sing N N 150 HIS CA HA sing N N 151 HIS C O doub N N 152 HIS C OXT sing N N 153 HIS CB CG sing N N 154 HIS CB HB2 sing N N 155 HIS CB HB3 sing N N 156 HIS CG ND1 sing Y N 157 HIS CG CD2 doub Y N 158 HIS ND1 CE1 doub Y N 159 HIS ND1 HD1 sing N N 160 HIS CD2 NE2 sing Y N 161 HIS CD2 HD2 sing N N 162 HIS CE1 NE2 sing Y N 163 HIS CE1 HE1 sing N N 164 HIS NE2 HE2 sing N N 165 HIS OXT HXT sing N N 166 HOH O H1 sing N N 167 HOH O H2 sing N N 168 ILE N CA sing N N 169 ILE N H sing N N 170 ILE N H2 sing N N 171 ILE CA C sing N N 172 ILE CA CB sing N N 173 ILE CA HA sing N N 174 ILE C O doub N N 175 ILE C OXT sing N N 176 ILE CB CG1 sing N N 177 ILE CB CG2 sing N N 178 ILE CB HB sing N N 179 ILE CG1 CD1 sing N N 180 ILE CG1 HG12 sing N N 181 ILE CG1 HG13 sing N N 182 ILE CG2 HG21 sing N N 183 ILE CG2 HG22 sing N N 184 ILE CG2 HG23 sing N N 185 ILE CD1 HD11 sing N N 186 ILE CD1 HD12 sing N N 187 ILE CD1 HD13 sing N N 188 ILE OXT HXT sing N N 189 LEU N CA sing N N 190 LEU N H sing N N 191 LEU N H2 sing N N 192 LEU CA C sing N N 193 LEU CA CB sing N N 194 LEU CA HA sing N N 195 LEU C O doub N N 196 LEU C OXT sing N N 197 LEU CB CG sing N N 198 LEU CB HB2 sing N N 199 LEU CB HB3 sing N N 200 LEU CG CD1 sing N N 201 LEU CG CD2 sing N N 202 LEU CG HG sing N N 203 LEU CD1 HD11 sing N N 204 LEU CD1 HD12 sing N N 205 LEU CD1 HD13 sing N N 206 LEU CD2 HD21 sing N N 207 LEU CD2 HD22 sing N N 208 LEU CD2 HD23 sing N N 209 LEU OXT HXT sing N N 210 LYS N CA sing N N 211 LYS N H sing N N 212 LYS N H2 sing N N 213 LYS CA C sing N N 214 LYS CA CB sing N N 215 LYS CA HA sing N N 216 LYS C O doub N N 217 LYS C OXT sing N N 218 LYS CB CG sing N N 219 LYS CB HB2 sing N N 220 LYS CB HB3 sing N N 221 LYS CG CD sing N N 222 LYS CG HG2 sing N N 223 LYS CG HG3 sing N N 224 LYS CD CE sing N N 225 LYS CD HD2 sing N N 226 LYS CD HD3 sing N N 227 LYS CE NZ sing N N 228 LYS CE HE2 sing N N 229 LYS CE HE3 sing N N 230 LYS NZ HZ1 sing N N 231 LYS NZ HZ2 sing N N 232 LYS NZ HZ3 sing N N 233 LYS OXT HXT sing N N 234 MET N CA sing N N 235 MET N H sing N N 236 MET N H2 sing N N 237 MET CA C sing N N 238 MET CA CB sing N N 239 MET CA HA sing N N 240 MET C O doub N N 241 MET C OXT sing N N 242 MET CB CG sing N N 243 MET CB HB2 sing N N 244 MET CB HB3 sing N N 245 MET CG SD sing N N 246 MET CG HG2 sing N N 247 MET CG HG3 sing N N 248 MET SD CE sing N N 249 MET CE HE1 sing N N 250 MET CE HE2 sing N N 251 MET CE HE3 sing N N 252 MET OXT HXT sing N N 253 PHE N CA sing N N 254 PHE N H sing N N 255 PHE N H2 sing N N 256 PHE CA C sing N N 257 PHE CA CB sing N N 258 PHE CA HA sing N N 259 PHE C O doub N N 260 PHE C OXT sing N N 261 PHE CB CG sing N N 262 PHE CB HB2 sing N N 263 PHE CB HB3 sing N N 264 PHE CG CD1 doub Y N 265 PHE CG CD2 sing Y N 266 PHE CD1 CE1 sing Y N 267 PHE CD1 HD1 sing N N 268 PHE CD2 CE2 doub Y N 269 PHE CD2 HD2 sing N N 270 PHE CE1 CZ doub Y N 271 PHE CE1 HE1 sing N N 272 PHE CE2 CZ sing Y N 273 PHE CE2 HE2 sing N N 274 PHE CZ HZ sing N N 275 PHE OXT HXT sing N N 276 PRO N CA sing N N 277 PRO N CD sing N N 278 PRO N H sing N N 279 PRO CA C sing N N 280 PRO CA CB sing N N 281 PRO CA HA sing N N 282 PRO C O doub N N 283 PRO C OXT sing N N 284 PRO CB CG sing N N 285 PRO CB HB2 sing N N 286 PRO CB HB3 sing N N 287 PRO CG CD sing N N 288 PRO CG HG2 sing N N 289 PRO CG HG3 sing N N 290 PRO CD HD2 sing N N 291 PRO CD HD3 sing N N 292 PRO OXT HXT sing N N 293 SER N CA sing N N 294 SER N H sing N N 295 SER N H2 sing N N 296 SER CA C sing N N 297 SER CA CB sing N N 298 SER CA HA sing N N 299 SER C O doub N N 300 SER C OXT sing N N 301 SER CB OG sing N N 302 SER CB HB2 sing N N 303 SER CB HB3 sing N N 304 SER OG HG sing N N 305 SER OXT HXT sing N N 306 THR N CA sing N N 307 THR N H sing N N 308 THR N H2 sing N N 309 THR CA C sing N N 310 THR CA CB sing N N 311 THR CA HA sing N N 312 THR C O doub N N 313 THR C OXT sing N N 314 THR CB OG1 sing N N 315 THR CB CG2 sing N N 316 THR CB HB sing N N 317 THR OG1 HG1 sing N N 318 THR CG2 HG21 sing N N 319 THR CG2 HG22 sing N N 320 THR CG2 HG23 sing N N 321 THR OXT HXT sing N N 322 TRP N CA sing N N 323 TRP N H sing N N 324 TRP N H2 sing N N 325 TRP CA C sing N N 326 TRP CA CB sing N N 327 TRP CA HA sing N N 328 TRP C O doub N N 329 TRP C OXT sing N N 330 TRP CB CG sing N N 331 TRP CB HB2 sing N N 332 TRP CB HB3 sing N N 333 TRP CG CD1 doub Y N 334 TRP CG CD2 sing Y N 335 TRP CD1 NE1 sing Y N 336 TRP CD1 HD1 sing N N 337 TRP CD2 CE2 doub Y N 338 TRP CD2 CE3 sing Y N 339 TRP NE1 CE2 sing Y N 340 TRP NE1 HE1 sing N N 341 TRP CE2 CZ2 sing Y N 342 TRP CE3 CZ3 doub Y N 343 TRP CE3 HE3 sing N N 344 TRP CZ2 CH2 doub Y N 345 TRP CZ2 HZ2 sing N N 346 TRP CZ3 CH2 sing Y N 347 TRP CZ3 HZ3 sing N N 348 TRP CH2 HH2 sing N N 349 TRP OXT HXT sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 VAL N CA sing N N 375 VAL N H sing N N 376 VAL N H2 sing N N 377 VAL CA C sing N N 378 VAL CA CB sing N N 379 VAL CA HA sing N N 380 VAL C O doub N N 381 VAL C OXT sing N N 382 VAL CB CG1 sing N N 383 VAL CB CG2 sing N N 384 VAL CB HB sing N N 385 VAL CG1 HG11 sing N N 386 VAL CG1 HG12 sing N N 387 VAL CG1 HG13 sing N N 388 VAL CG2 HG21 sing N N 389 VAL CG2 HG22 sing N N 390 VAL CG2 HG23 sing N N 391 VAL OXT HXT sing N N 392 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details Enteropeptidase # _atom_sites.entry_id 2OQ5 _atom_sites.fract_transf_matrix[1][1] 0.020877 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014245 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012469 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_