HEADER HYDROLASE 31-JAN-07 2OQF TITLE STRUCTURE OF A SYNTHETIC, NON-NATURAL ANALOGUE OF RNASE A: [N71K(ADE), TITLE 2 D83A]RNASE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PANCREATIC; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RNASE 1, RNASE A; COMPND 5 EC: 3.1.27.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: COMBINED SOLID PHASE PEPTIDE SYNTHESIS AND NATIVE SOURCE 4 CHEMICAL LIGATION CHEMISTRIES. KEYWDS NON-NATURAL AMINO ACID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.BOEREMA,V.A.TERESHKO,J.L.ZHANG,C.HE,S.B.H.KENT REVDAT 6 06-NOV-24 2OQF 1 REMARK REVDAT 5 30-AUG-23 2OQF 1 REMARK REVDAT 4 20-OCT-21 2OQF 1 SEQADV LINK REVDAT 3 13-JUL-11 2OQF 1 VERSN REVDAT 2 24-FEB-09 2OQF 1 VERSN REVDAT 1 12-FEB-08 2OQF 0 JRNL AUTH D.J.BOEREMA,V.A.TERESHKO,J.L.ZHANG,C.HE,S.B.H.KENT JRNL TITL DESIGN, SYNTHESIS, AND CHARACTERIZATION OF NON-NATURAL RNASE JRNL TITL 2 A ANALOGUES WITH ENHANCED SECOND-STEP CATALYTIC ACTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 17142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1195 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3818 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.72000 REMARK 3 B22 (A**2) : -1.78000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 1.34000 REMARK 3 B23 (A**2) : 1.10000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.901 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.298 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3919 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3247 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5300 ; 1.214 ; 1.901 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7670 ; 0.752 ; 2.140 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 490 ; 6.058 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;35.479 ;24.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 664 ;13.990 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;10.674 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 577 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4366 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 734 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 658 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3113 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1895 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1843 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 120 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.096 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3175 ; 0.328 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 992 ; 0.045 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3995 ; 0.381 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1713 ; 0.595 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1305 ; 0.907 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 65 4 REMARK 3 1 C 1 C 65 4 REMARK 3 2 A 75 A 122 4 REMARK 3 2 C 75 C 122 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1598 ; 0.22 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1598 ; 0.17 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 65 4 REMARK 3 1 D 1 D 65 4 REMARK 3 2 B 75 B 122 4 REMARK 3 2 D 75 D 122 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 1598 ; 0.18 ; 0.50 REMARK 3 MEDIUM THERMAL 2 B (A**2): 1598 ; 0.16 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 124 REMARK 3 RESIDUE RANGE : A 125 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0636 -18.6130 22.6238 REMARK 3 T TENSOR REMARK 3 T11: -0.1065 T22: -0.0726 REMARK 3 T33: -0.1067 T12: -0.0112 REMARK 3 T13: -0.0259 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.2632 L22: 2.2807 REMARK 3 L33: 1.1805 L12: -0.8690 REMARK 3 L13: -0.9231 L23: 0.9000 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.0216 S13: -0.0330 REMARK 3 S21: 0.0064 S22: 0.0636 S23: -0.0453 REMARK 3 S31: 0.0944 S32: 0.0109 S33: -0.0089 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 124 REMARK 3 RESIDUE RANGE : B 125 B 154 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2056 -4.9490 7.7585 REMARK 3 T TENSOR REMARK 3 T11: -0.0898 T22: -0.0410 REMARK 3 T33: -0.0736 T12: -0.0390 REMARK 3 T13: -0.0415 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.3925 L22: 2.5328 REMARK 3 L33: 1.6945 L12: -1.1039 REMARK 3 L13: -0.5512 L23: 0.2995 REMARK 3 S TENSOR REMARK 3 S11: -0.1189 S12: 0.0973 S13: -0.0429 REMARK 3 S21: 0.0677 S22: 0.0850 S23: 0.1068 REMARK 3 S31: 0.0558 S32: -0.1067 S33: 0.0339 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 124 REMARK 3 RESIDUE RANGE : C 125 C 144 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1722 18.8643 -8.6140 REMARK 3 T TENSOR REMARK 3 T11: -0.0820 T22: -0.0582 REMARK 3 T33: -0.0383 T12: -0.0091 REMARK 3 T13: 0.0178 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.6117 L22: 2.4374 REMARK 3 L33: 3.5222 L12: 0.0237 REMARK 3 L13: 0.7364 L23: -1.9269 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: 0.0057 S13: 0.0454 REMARK 3 S21: -0.0368 S22: 0.0602 S23: 0.0117 REMARK 3 S31: -0.1628 S32: -0.0878 S33: -0.0764 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 121 REMARK 3 RESIDUE RANGE : D 125 D 145 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5542 3.5674 -23.9983 REMARK 3 T TENSOR REMARK 3 T11: -0.0649 T22: -0.0579 REMARK 3 T33: -0.0515 T12: -0.0046 REMARK 3 T13: 0.0184 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.7237 L22: 2.9032 REMARK 3 L33: 3.2782 L12: -0.4577 REMARK 3 L13: 0.4592 L23: -1.1562 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.0178 S13: 0.0241 REMARK 3 S21: 0.2856 S22: 0.0194 S23: -0.0243 REMARK 3 S31: -0.0419 S32: 0.1173 S33: -0.0420 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000041459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97985 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2NUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 123 REMARK 465 VAL D 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 48 66.66 -101.81 REMARK 500 GLN A 60 -133.66 -105.64 REMARK 500 ASN A 67 3.08 -68.95 REMARK 500 THR A 70 47.65 -97.77 REMARK 500 SER A 89 35.48 -92.53 REMARK 500 ASP A 121 -63.96 -90.83 REMARK 500 ALA B 19 148.43 -177.28 REMARK 500 SER B 21 45.82 -100.97 REMARK 500 HIS B 48 62.74 -105.65 REMARK 500 GLN B 60 -137.24 -111.78 REMARK 500 THR B 70 44.64 -82.01 REMARK 500 GLU C 2 127.83 -38.10 REMARK 500 LYS C 37 -76.72 -76.24 REMARK 500 HIS C 48 56.65 -103.22 REMARK 500 GLN C 60 -137.16 -114.22 REMARK 500 HIS D 48 61.28 -102.60 REMARK 500 GLN D 60 -129.46 -117.70 REMARK 500 THR D 70 55.74 -92.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 2OQF A 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 2OQF B 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 2OQF C 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 2OQF D 1 124 UNP P61823 RNAS1_BOVIN 27 150 SEQADV 2OQF XX1 A 71 UNP P61823 ASN 97 MODIFIED RESIDUE SEQADV 2OQF ALA A 83 UNP P61823 ASP 109 ENGINEERED MUTATION SEQADV 2OQF XX1 B 71 UNP P61823 ASN 97 MODIFIED RESIDUE SEQADV 2OQF ALA B 83 UNP P61823 ASP 109 ENGINEERED MUTATION SEQADV 2OQF XX1 C 71 UNP P61823 ASN 97 MODIFIED RESIDUE SEQADV 2OQF ALA C 83 UNP P61823 ASP 109 ENGINEERED MUTATION SEQADV 2OQF XX1 D 71 UNP P61823 ASN 97 MODIFIED RESIDUE SEQADV 2OQF ALA D 83 UNP P61823 ASP 109 ENGINEERED MUTATION SEQRES 1 A 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 A 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 A 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 A 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 A 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 A 124 LYS ASN GLY GLN THR XX1 CYS TYR GLN SER TYR SER THR SEQRES 7 A 124 MET SER ILE THR ALA CYS ARG GLU THR GLY SER SER LYS SEQRES 8 A 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 A 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 A 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 B 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 B 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 B 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 B 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 B 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 B 124 LYS ASN GLY GLN THR XX1 CYS TYR GLN SER TYR SER THR SEQRES 7 B 124 MET SER ILE THR ALA CYS ARG GLU THR GLY SER SER LYS SEQRES 8 B 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 B 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 B 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 C 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 C 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 C 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 C 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 C 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 C 124 LYS ASN GLY GLN THR XX1 CYS TYR GLN SER TYR SER THR SEQRES 7 C 124 MET SER ILE THR ALA CYS ARG GLU THR GLY SER SER LYS SEQRES 8 C 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 C 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 C 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 D 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 D 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 D 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 D 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 D 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 D 124 LYS ASN GLY GLN THR XX1 CYS TYR GLN SER TYR SER THR SEQRES 7 D 124 MET SER ILE THR ALA CYS ARG GLU THR GLY SER SER LYS SEQRES 8 D 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 D 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 D 124 VAL HIS PHE ASP ALA SER VAL MODRES 2OQF XX1 A 71 LYS N~6~-7H-PURIN-6-YL-L-LYSINE MODRES 2OQF XX1 B 71 LYS N~6~-7H-PURIN-6-YL-L-LYSINE MODRES 2OQF XX1 C 71 LYS N~6~-7H-PURIN-6-YL-L-LYSINE MODRES 2OQF XX1 D 71 LYS N~6~-7H-PURIN-6-YL-L-LYSINE HET XX1 A 71 18 HET XX1 B 71 18 HET XX1 C 71 18 HET XX1 D 71 18 HETNAM XX1 N~6~-7H-PURIN-6-YL-L-LYSINE FORMUL 1 XX1 4(C11 H16 N6 O2) FORMUL 5 HOH *91(H2 O) HELIX 1 1 THR A 3 MET A 13 1 11 HELIX 2 2 ASN A 24 ARG A 33 1 10 HELIX 3 3 SER A 50 VAL A 57 1 8 HELIX 4 4 CYS A 58 GLN A 60 5 3 HELIX 5 5 THR B 3 MET B 13 1 11 HELIX 6 6 ASN B 24 ARG B 33 1 10 HELIX 7 7 SER B 50 ALA B 56 1 7 HELIX 8 8 VAL B 57 GLN B 60 5 4 HELIX 9 9 THR C 3 MET C 13 1 11 HELIX 10 10 ASN C 24 ARG C 33 1 10 HELIX 11 11 SER C 50 ALA C 56 1 7 HELIX 12 12 VAL C 57 GLN C 60 5 4 HELIX 13 13 THR D 3 MET D 13 1 11 HELIX 14 14 ASN D 24 ARG D 33 1 10 HELIX 15 15 SER D 50 ALA D 56 1 7 HELIX 16 16 VAL D 57 GLN D 60 5 4 SHEET 1 A 5 VAL A 43 VAL A 47 0 SHEET 2 A 5 MET A 79 GLU A 86 -1 O CYS A 84 N ASN A 44 SHEET 3 A 5 TYR A 97 GLU A 111 -1 O ALA A 102 N ILE A 81 SHEET 4 A 5 CYS A 72 GLN A 74 -1 N TYR A 73 O VAL A 108 SHEET 5 A 5 LYS A 61 VAL A 63 -1 N LYS A 61 O GLN A 74 SHEET 1 B 4 VAL A 43 VAL A 47 0 SHEET 2 B 4 MET A 79 GLU A 86 -1 O CYS A 84 N ASN A 44 SHEET 3 B 4 TYR A 97 GLU A 111 -1 O ALA A 102 N ILE A 81 SHEET 4 B 4 VAL A 116 VAL A 124 -1 O ALA A 122 N ILE A 107 SHEET 1 C 3 VAL B 43 VAL B 47 0 SHEET 2 C 3 MET B 79 GLU B 86 -1 O THR B 82 N PHE B 46 SHEET 3 C 3 TYR B 97 LYS B 104 -1 O LYS B 104 N MET B 79 SHEET 1 D 4 LYS B 61 VAL B 63 0 SHEET 2 D 4 CYS B 72 GLN B 74 -1 O GLN B 74 N LYS B 61 SHEET 3 D 4 ILE B 106 GLU B 111 -1 O VAL B 108 N TYR B 73 SHEET 4 D 4 VAL B 116 SER B 123 -1 O ASP B 121 N ILE B 107 SHEET 1 E 5 VAL C 43 VAL C 47 0 SHEET 2 E 5 MET C 79 GLU C 86 -1 O CYS C 84 N ASN C 44 SHEET 3 E 5 TYR C 97 GLU C 111 -1 O ALA C 102 N ILE C 81 SHEET 4 E 5 CYS C 72 GLN C 74 -1 N TYR C 73 O VAL C 108 SHEET 5 E 5 LYS C 61 VAL C 63 -1 N LYS C 61 O GLN C 74 SHEET 1 F 4 VAL C 43 VAL C 47 0 SHEET 2 F 4 MET C 79 GLU C 86 -1 O CYS C 84 N ASN C 44 SHEET 3 F 4 TYR C 97 GLU C 111 -1 O ALA C 102 N ILE C 81 SHEET 4 F 4 VAL C 116 VAL C 124 -1 O ALA C 122 N ILE C 107 SHEET 1 G 3 VAL D 43 VAL D 47 0 SHEET 2 G 3 MET D 79 GLU D 86 -1 O CYS D 84 N ASN D 44 SHEET 3 G 3 TYR D 97 LYS D 104 -1 O LYS D 104 N MET D 79 SHEET 1 H 4 LYS D 61 VAL D 63 0 SHEET 2 H 4 CYS D 72 GLN D 74 -1 O GLN D 74 N LYS D 61 SHEET 3 H 4 ILE D 107 GLU D 111 -1 O VAL D 108 N TYR D 73 SHEET 4 H 4 VAL D 116 ALA D 122 -1 O ALA D 122 N ILE D 107 SSBOND 1 CYS A 26 CYS A 84 1555 1555 2.04 SSBOND 2 CYS A 40 CYS A 95 1555 1555 2.04 SSBOND 3 CYS A 58 CYS A 110 1555 1555 2.02 SSBOND 4 CYS A 65 CYS A 72 1555 1555 2.02 SSBOND 5 CYS B 26 CYS B 84 1555 1555 2.03 SSBOND 6 CYS B 40 CYS B 95 1555 1555 2.05 SSBOND 7 CYS B 58 CYS B 110 1555 1555 2.03 SSBOND 8 CYS B 65 CYS B 72 1555 1555 2.04 SSBOND 9 CYS C 26 CYS C 84 1555 1555 2.03 SSBOND 10 CYS C 40 CYS C 95 1555 1555 2.03 SSBOND 11 CYS C 58 CYS C 110 1555 1555 2.04 SSBOND 12 CYS C 65 CYS C 72 1555 1555 2.04 SSBOND 13 CYS D 26 CYS D 84 1555 1555 2.03 SSBOND 14 CYS D 40 CYS D 95 1555 1555 2.05 SSBOND 15 CYS D 58 CYS D 110 1555 1555 2.01 SSBOND 16 CYS D 65 CYS D 72 1555 1555 2.02 LINK C THR A 70 N XX1 A 71 1555 1555 1.33 LINK C XX1 A 71 N CYS A 72 1555 1555 1.33 LINK C THR B 70 N XX1 B 71 1555 1555 1.33 LINK C XX1 B 71 N CYS B 72 1555 1555 1.34 LINK C THR C 70 N XX1 C 71 1555 1555 1.32 LINK C XX1 C 71 N CYS C 72 1555 1555 1.34 LINK C THR D 70 N XX1 D 71 1555 1555 1.33 LINK C XX1 D 71 N CYS D 72 1555 1555 1.33 CISPEP 1 TYR A 92 PRO A 93 0 6.20 CISPEP 2 ASN A 113 PRO A 114 0 13.67 CISPEP 3 TYR B 92 PRO B 93 0 6.41 CISPEP 4 ASN B 113 PRO B 114 0 9.10 CISPEP 5 TYR C 92 PRO C 93 0 -1.39 CISPEP 6 ASN C 113 PRO C 114 0 12.50 CISPEP 7 TYR D 92 PRO D 93 0 6.46 CISPEP 8 ASN D 113 PRO D 114 0 7.90 CRYST1 37.578 50.534 62.863 85.26 74.31 82.70 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026611 -0.003409 -0.007314 0.00000 SCALE2 0.000000 0.019950 -0.001010 0.00000 SCALE3 0.000000 0.000000 0.016545 0.00000