data_2OR7 # _entry.id 2OR7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2OR7 RCSB RCSB041486 WWPDB D_1000041486 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2OR8 _pdbx_database_related.details 'Tim-1 IgV domain' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2OR7 _pdbx_database_status.recvd_initial_deposition_date 2007-02-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Santiago, C.' 1 'Ballesteros, A.' 2 'Kaplan, G.G.' 3 'Casasnovas, J.M.' 4 # _citation.id primary _citation.title ;Structures of T Cell Immunoglobulin Mucin Receptors 1 and 2 Reveal Mechanisms for Regulation of Immune Responses by the TIM Receptor Family. ; _citation.journal_abbrev Immunity _citation.journal_volume 26 _citation.page_first 299 _citation.page_last 310 _citation.year 2007 _citation.journal_id_ASTM IUNIEH _citation.country US _citation.journal_id_ISSN 1074-7613 _citation.journal_id_CSD 2048 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17363299 _citation.pdbx_database_id_DOI 10.1016/j.immuni.2007.01.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Santiago, C.' 1 primary 'Ballesteros, A.' 2 primary 'Tami, C.' 3 primary 'Martinez-Munoz, L.' 4 primary 'Kaplan, G.G.' 5 primary 'Casasnovas, J.M.' 6 # _cell.entry_id 2OR7 _cell.length_a 61.490 _cell.length_b 60.410 _cell.length_c 69.110 _cell.angle_alpha 90.00 _cell.angle_beta 115.90 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OR7 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'T-cell immunoglobulin and mucin domain-containing protein 2' 12691.537 2 ? ? 'N-terminal Cys-rich domain' ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 water nat water 18.015 126 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TIMD-2, T cell membrane protein 2, TIM-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIEN TVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVPR ; _entity_poly.pdbx_seq_one_letter_code_can ;MESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIEN TVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVPR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 SER n 1 4 HIS n 1 5 THR n 1 6 ALA n 1 7 VAL n 1 8 GLN n 1 9 GLY n 1 10 LEU n 1 11 ALA n 1 12 GLY n 1 13 HIS n 1 14 PRO n 1 15 VAL n 1 16 THR n 1 17 LEU n 1 18 PRO n 1 19 CYS n 1 20 ILE n 1 21 TYR n 1 22 SER n 1 23 THR n 1 24 HIS n 1 25 LEU n 1 26 GLY n 1 27 GLY n 1 28 ILE n 1 29 VAL n 1 30 PRO n 1 31 MET n 1 32 CYS n 1 33 TRP n 1 34 GLY n 1 35 LEU n 1 36 GLY n 1 37 GLU n 1 38 CYS n 1 39 ARG n 1 40 HIS n 1 41 SER n 1 42 TYR n 1 43 CYS n 1 44 ILE n 1 45 ARG n 1 46 SER n 1 47 LEU n 1 48 ILE n 1 49 TRP n 1 50 THR n 1 51 ASN n 1 52 GLY n 1 53 TYR n 1 54 THR n 1 55 VAL n 1 56 THR n 1 57 HIS n 1 58 GLN n 1 59 ARG n 1 60 ASN n 1 61 SER n 1 62 ARG n 1 63 TYR n 1 64 GLN n 1 65 LEU n 1 66 LYS n 1 67 GLY n 1 68 ASN n 1 69 ILE n 1 70 SER n 1 71 GLU n 1 72 GLY n 1 73 ASN n 1 74 VAL n 1 75 SER n 1 76 LEU n 1 77 THR n 1 78 ILE n 1 79 GLU n 1 80 ASN n 1 81 THR n 1 82 VAL n 1 83 VAL n 1 84 GLY n 1 85 ASP n 1 86 GLY n 1 87 GLY n 1 88 PRO n 1 89 TYR n 1 90 CYS n 1 91 CYS n 1 92 VAL n 1 93 VAL n 1 94 GLU n 1 95 ILE n 1 96 PRO n 1 97 GLY n 1 98 ALA n 1 99 PHE n 1 100 HIS n 1 101 PHE n 1 102 VAL n 1 103 ASP n 1 104 TYR n 1 105 MET n 1 106 LEU n 1 107 GLU n 1 108 VAL n 1 109 LYS n 1 110 PRO n 1 111 GLU n 1 112 LEU n 1 113 VAL n 1 114 PRO n 1 115 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Timd2, Tim2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain C57BL/6J _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-27b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TIMD2_MOUSE _struct_ref.pdbx_db_accession Q8R183 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSLYQLKGNISEGNVSLTIENT VVGDGGPYCCVVEIPGAFHFVDYMLEVKPE ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OR7 A 2 ? 111 ? Q8R183 20 ? 129 ? 2 111 2 1 2OR7 B 2 ? 111 ? Q8R183 20 ? 129 ? 2 111 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OR7 MET A 1 ? UNP Q8R183 ? ? 'INITIATING METHIONINE' 1 1 1 2OR7 ARG A 62 ? UNP Q8R183 LEU 80 'SEE REMARK 999' 62 2 1 2OR7 LEU A 112 ? UNP Q8R183 ? ? 'CLONING ARTIFACT' 112 3 1 2OR7 VAL A 113 ? UNP Q8R183 ? ? 'CLONING ARTIFACT' 113 4 1 2OR7 PRO A 114 ? UNP Q8R183 ? ? 'CLONING ARTIFACT' 114 5 1 2OR7 ARG A 115 ? UNP Q8R183 ? ? 'CLONING ARTIFACT' 115 6 2 2OR7 MET B 1 ? UNP Q8R183 ? ? 'INITIATING METHIONINE' 1 7 2 2OR7 ARG B 62 ? UNP Q8R183 LEU 80 'SEE REMARK 999' 62 8 2 2OR7 LEU B 112 ? UNP Q8R183 ? ? 'CLONING ARTIFACT' 112 9 2 2OR7 VAL B 113 ? UNP Q8R183 ? ? 'CLONING ARTIFACT' 113 10 2 2OR7 PRO B 114 ? UNP Q8R183 ? ? 'CLONING ARTIFACT' 114 11 2 2OR7 ARG B 115 ? UNP Q8R183 ? ? 'CLONING ARTIFACT' 115 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2OR7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details ;30% PEG-2000 methylether, 5% PEG-400, 0.2M ammonium sulphate, 0.1M sodium acetate, and 4% 1,2,3-heptanetriol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 2003-11-15 ? 2 CCD 'ADSC QUANTUM 4' 2004-11-21 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 2 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.978925 1.0 2 0.9340 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE BM16' ESRF BM16 0.978925 ? 2 SYNCHROTRON 'ESRF BEAMLINE ID14-2' ESRF ID14-2 0.9340 ? # _reflns.entry_id 2OR7 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 25 _reflns.d_resolution_high 1.5 _reflns.number_obs 35925 _reflns.number_all 35925 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_Rsym_value 7.4 _reflns.pdbx_netI_over_sigmaI 6 _reflns.B_iso_Wilson_estimate 15.85 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.235 _reflns_shell.pdbx_Rsym_value 23.5 _reflns_shell.meanI_over_sigI_obs 3 _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 5277 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OR7 _refine.ls_number_reflns_obs 35890 _refine.ls_number_reflns_all 35890 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15 _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs 98.4 _refine.ls_R_factor_obs 0.194 _refine.ls_R_factor_all 0.194 _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free 0.208 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 3571 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.4 _refine.aniso_B[1][1] -1.25 _refine.aniso_B[2][2] -0.75 _refine.aniso_B[3][3] 2.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -2.78 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2OR7 _refine_analyze.Luzzati_coordinate_error_obs 0.16 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.18 _refine_analyze.Luzzati_sigma_a_free 0.13 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1710 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 1840 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low 15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0052 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.62 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2OR7 _struct.title Tim-2 _struct.pdbx_descriptor 'T-cell immunoglobulin and mucin domain-containing protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OR7 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Beta barrel, immunoglobulin fold, IgV domain, TIM, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 22 ? GLY A 27 ? SER A 22 GLY A 27 1 ? 6 HELX_P HELX_P2 2 GLU A 37 ? TYR A 42 ? GLU A 37 TYR A 42 1 ? 6 HELX_P HELX_P3 3 ASN A 68 ? GLY A 72 ? ASN A 68 GLY A 72 5 ? 5 HELX_P HELX_P4 4 VAL A 82 ? GLY A 86 ? VAL A 82 GLY A 86 5 ? 5 HELX_P HELX_P5 5 SER B 22 ? GLY B 27 ? SER B 22 GLY B 27 1 ? 6 HELX_P HELX_P6 6 ASN B 68 ? GLY B 72 ? ASN B 68 GLY B 72 5 ? 5 HELX_P HELX_P7 7 VAL B 82 ? GLY B 86 ? VAL B 82 GLY B 86 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 19 A CYS 91 1_555 ? ? ? ? ? ? ? 2.022 ? disulf2 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 32 A CYS 43 1_555 ? ? ? ? ? ? ? 2.031 ? disulf3 disulf ? ? A CYS 38 SG ? ? ? 1_555 A CYS 90 SG ? ? A CYS 38 A CYS 90 1_555 ? ? ? ? ? ? ? 2.034 ? disulf4 disulf ? ? B CYS 19 SG ? ? ? 1_555 B CYS 91 SG ? ? B CYS 19 B CYS 91 1_555 ? ? ? ? ? ? ? 2.023 ? disulf5 disulf ? ? B CYS 32 SG ? ? ? 1_555 B CYS 43 SG ? ? B CYS 32 B CYS 43 1_555 ? ? ? ? ? ? ? 2.028 ? disulf6 disulf ? ? B CYS 38 SG ? ? ? 1_555 B CYS 90 SG ? ? B CYS 38 B CYS 90 1_555 ? ? ? ? ? ? ? 2.038 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 6 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? LEU A 10 ? VAL A 7 LEU A 10 A 2 HIS A 100 ? LYS A 109 ? HIS A 100 LYS A 109 A 3 GLY A 87 ? VAL A 93 ? GLY A 87 VAL A 93 A 4 MET A 31 ? LEU A 35 ? MET A 31 LEU A 35 A 5 SER A 46 ? THR A 50 ? SER A 46 THR A 50 A 6 VAL A 55 ? GLN A 58 ? VAL A 55 GLN A 58 B 1 VAL A 15 ? LEU A 17 ? VAL A 15 LEU A 17 B 2 LEU A 76 ? ILE A 78 ? LEU A 76 ILE A 78 B 3 TYR A 63 ? GLN A 64 ? TYR A 63 GLN A 64 C 1 THR B 5 ? LEU B 10 ? THR B 5 LEU B 10 C 2 HIS B 100 ? LYS B 109 ? HIS B 100 LYS B 109 C 3 GLY B 87 ? VAL B 93 ? GLY B 87 VAL B 93 C 4 MET B 31 ? LEU B 35 ? MET B 31 LEU B 35 C 5 SER B 46 ? THR B 50 ? SER B 46 THR B 50 C 6 VAL B 55 ? GLN B 58 ? VAL B 55 GLN B 58 D 1 VAL B 15 ? LEU B 17 ? VAL B 15 LEU B 17 D 2 LEU B 76 ? ILE B 78 ? LEU B 76 ILE B 78 D 3 TYR B 63 ? GLN B 64 ? TYR B 63 GLN B 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 9 ? N GLY A 9 O LYS A 109 ? O LYS A 109 A 2 3 O LEU A 106 ? O LEU A 106 N GLY A 87 ? N GLY A 87 A 3 4 O VAL A 92 ? O VAL A 92 N CYS A 32 ? N CYS A 32 A 4 5 N TRP A 33 ? N TRP A 33 O LEU A 47 ? O LEU A 47 A 5 6 N TRP A 49 ? N TRP A 49 O THR A 56 ? O THR A 56 B 1 2 N LEU A 17 ? N LEU A 17 O LEU A 76 ? O LEU A 76 B 2 3 O THR A 77 ? O THR A 77 N GLN A 64 ? N GLN A 64 C 1 2 N GLY B 9 ? N GLY B 9 O GLU B 107 ? O GLU B 107 C 2 3 O LEU B 106 ? O LEU B 106 N GLY B 87 ? N GLY B 87 C 3 4 O VAL B 92 ? O VAL B 92 N CYS B 32 ? N CYS B 32 C 4 5 N TRP B 33 ? N TRP B 33 O LEU B 47 ? O LEU B 47 C 5 6 N TRP B 49 ? N TRP B 49 O THR B 56 ? O THR B 56 D 1 2 N LEU B 17 ? N LEU B 17 O LEU B 76 ? O LEU B 76 D 2 3 O THR B 77 ? O THR B 77 N GLN B 64 ? N GLN B 64 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE ACT A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 CYS A 19 ? CYS A 19 . ? 1_555 ? 2 AC1 7 ILE A 20 ? ILE A 20 . ? 1_555 ? 3 AC1 7 HIS A 100 ? HIS A 100 . ? 1_555 ? 4 AC1 7 CYS B 19 ? CYS B 19 . ? 1_555 ? 5 AC1 7 ILE B 20 ? ILE B 20 . ? 1_555 ? 6 AC1 7 HIS B 100 ? HIS B 100 . ? 1_555 ? 7 AC1 7 VAL B 102 ? VAL B 102 . ? 1_555 ? # _database_PDB_matrix.entry_id 2OR7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2OR7 _atom_sites.fract_transf_matrix[1][1] 0.016263 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007897 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016554 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016085 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 HIS 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 TRP 33 33 33 TRP TRP A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 CYS 90 90 90 CYS CYS A . n A 1 91 CYS 91 91 91 CYS CYS A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 HIS 100 100 100 HIS HIS A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 VAL 113 113 ? ? ? A . n A 1 114 PRO 114 114 ? ? ? A . n A 1 115 ARG 115 115 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 GLU 2 2 2 GLU GLU B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 HIS 4 4 4 HIS HIS B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 GLN 8 8 8 GLN GLN B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 HIS 13 13 13 HIS HIS B . n B 1 14 PRO 14 14 14 PRO PRO B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 THR 16 16 16 THR THR B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 PRO 18 18 18 PRO PRO B . n B 1 19 CYS 19 19 19 CYS CYS B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 THR 23 23 23 THR THR B . n B 1 24 HIS 24 24 24 HIS HIS B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 GLY 26 26 26 GLY GLY B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 VAL 29 29 29 VAL VAL B . n B 1 30 PRO 30 30 30 PRO PRO B . n B 1 31 MET 31 31 31 MET MET B . n B 1 32 CYS 32 32 32 CYS CYS B . n B 1 33 TRP 33 33 33 TRP TRP B . n B 1 34 GLY 34 34 34 GLY GLY B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 GLU 37 37 37 GLU GLU B . n B 1 38 CYS 38 38 38 CYS CYS B . n B 1 39 ARG 39 39 39 ARG ARG B . n B 1 40 HIS 40 40 40 HIS HIS B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 CYS 43 43 43 CYS CYS B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 ILE 48 48 48 ILE ILE B . n B 1 49 TRP 49 49 49 TRP TRP B . n B 1 50 THR 50 50 50 THR THR B . n B 1 51 ASN 51 51 51 ASN ASN B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 TYR 53 53 53 TYR TYR B . n B 1 54 THR 54 54 54 THR THR B . n B 1 55 VAL 55 55 55 VAL VAL B . n B 1 56 THR 56 56 56 THR THR B . n B 1 57 HIS 57 57 57 HIS HIS B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 ASN 60 60 60 ASN ASN B . n B 1 61 SER 61 61 61 SER SER B . n B 1 62 ARG 62 62 62 ARG ARG B . n B 1 63 TYR 63 63 63 TYR TYR B . n B 1 64 GLN 64 64 64 GLN GLN B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 ASN 68 68 68 ASN ASN B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 SER 70 70 70 SER SER B . n B 1 71 GLU 71 71 71 GLU GLU B . n B 1 72 GLY 72 72 72 GLY GLY B . n B 1 73 ASN 73 73 73 ASN ASN B . n B 1 74 VAL 74 74 74 VAL VAL B . n B 1 75 SER 75 75 75 SER SER B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 THR 77 77 77 THR THR B . n B 1 78 ILE 78 78 78 ILE ILE B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 THR 81 81 81 THR THR B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 GLY 84 84 84 GLY GLY B . n B 1 85 ASP 85 85 85 ASP ASP B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 GLY 87 87 87 GLY GLY B . n B 1 88 PRO 88 88 88 PRO PRO B . n B 1 89 TYR 89 89 89 TYR TYR B . n B 1 90 CYS 90 90 90 CYS CYS B . n B 1 91 CYS 91 91 91 CYS CYS B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 GLU 94 94 94 GLU GLU B . n B 1 95 ILE 95 95 95 ILE ILE B . n B 1 96 PRO 96 96 96 PRO PRO B . n B 1 97 GLY 97 97 97 GLY GLY B . n B 1 98 ALA 98 98 98 ALA ALA B . n B 1 99 PHE 99 99 99 PHE PHE B . n B 1 100 HIS 100 100 100 HIS HIS B . n B 1 101 PHE 101 101 101 PHE PHE B . n B 1 102 VAL 102 102 102 VAL VAL B . n B 1 103 ASP 103 103 103 ASP ASP B . n B 1 104 TYR 104 104 104 TYR TYR B . n B 1 105 MET 105 105 105 MET MET B . n B 1 106 LEU 106 106 106 LEU LEU B . n B 1 107 GLU 107 107 107 GLU GLU B . n B 1 108 VAL 108 108 108 VAL VAL B . n B 1 109 LYS 109 109 109 LYS LYS B . n B 1 110 PRO 110 110 110 PRO PRO B . n B 1 111 GLU 111 111 111 GLU GLU B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 VAL 113 113 113 VAL VAL B . n B 1 114 PRO 114 114 114 PRO PRO B . n B 1 115 ARG 115 115 115 ARG ARG B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D 2 1 B,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-03 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PDC 'data collection' . ? 1 SOLVE phasing . ? 2 CNS refinement 1.0 ? 3 XDS 'data reduction' . ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;sequence This sequence is from BALB/c and DBA/2 strains, in which residue 80 is Arg instead of Leu. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 MET _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE1 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 GLU _pdbx_validate_close_contact.auth_seq_id_2 37 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 2 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 2 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 2.01 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 HIS _pdbx_validate_rmsd_angle.auth_seq_id_1 40 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 HIS _pdbx_validate_rmsd_angle.auth_seq_id_2 40 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 HIS _pdbx_validate_rmsd_angle.auth_seq_id_3 40 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 90.96 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation -20.04 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 42 ? ? 53.88 -121.71 2 1 ARG A 45 ? ? -103.86 73.87 3 1 ALA A 98 ? ? -159.45 58.62 4 1 GLU B 2 ? ? -176.76 -170.20 5 1 SER B 3 ? ? 152.15 132.14 6 1 ARG B 39 ? ? 47.22 75.32 7 1 HIS B 40 ? ? 171.59 -41.73 8 1 TYR B 42 ? ? -79.60 47.16 9 1 CYS B 43 ? ? 75.49 38.74 10 1 ARG B 45 ? ? -119.21 74.64 11 1 ASN B 80 ? ? 38.52 61.05 12 1 ALA B 98 ? ? -158.20 55.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A HIS 4 ? A HIS 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A VAL 113 ? A VAL 113 7 1 Y 1 A PRO 114 ? A PRO 114 8 1 Y 1 A ARG 115 ? A ARG 115 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT 1 201 201 ACT ACT A . D 3 HOH 1 202 1 HOH HOH A . D 3 HOH 2 203 2 HOH HOH A . D 3 HOH 3 204 3 HOH HOH A . D 3 HOH 4 205 4 HOH HOH A . D 3 HOH 5 206 5 HOH HOH A . D 3 HOH 6 207 6 HOH HOH A . D 3 HOH 7 208 10 HOH HOH A . D 3 HOH 8 209 13 HOH HOH A . D 3 HOH 9 210 14 HOH HOH A . D 3 HOH 10 211 17 HOH HOH A . D 3 HOH 11 212 18 HOH HOH A . D 3 HOH 12 213 22 HOH HOH A . D 3 HOH 13 214 23 HOH HOH A . D 3 HOH 14 215 24 HOH HOH A . D 3 HOH 15 216 27 HOH HOH A . D 3 HOH 16 217 28 HOH HOH A . D 3 HOH 17 218 29 HOH HOH A . D 3 HOH 18 219 30 HOH HOH A . D 3 HOH 19 220 32 HOH HOH A . D 3 HOH 20 221 38 HOH HOH A . D 3 HOH 21 222 40 HOH HOH A . D 3 HOH 22 223 44 HOH HOH A . D 3 HOH 23 224 46 HOH HOH A . D 3 HOH 24 225 50 HOH HOH A . D 3 HOH 25 226 53 HOH HOH A . D 3 HOH 26 227 54 HOH HOH A . D 3 HOH 27 228 55 HOH HOH A . D 3 HOH 28 229 57 HOH HOH A . D 3 HOH 29 230 58 HOH HOH A . D 3 HOH 30 231 61 HOH HOH A . D 3 HOH 31 232 63 HOH HOH A . D 3 HOH 32 233 64 HOH HOH A . D 3 HOH 33 234 65 HOH HOH A . D 3 HOH 34 235 66 HOH HOH A . D 3 HOH 35 236 68 HOH HOH A . D 3 HOH 36 237 69 HOH HOH A . D 3 HOH 37 238 70 HOH HOH A . D 3 HOH 38 239 71 HOH HOH A . D 3 HOH 39 240 73 HOH HOH A . D 3 HOH 40 241 74 HOH HOH A . D 3 HOH 41 242 75 HOH HOH A . D 3 HOH 42 243 77 HOH HOH A . D 3 HOH 43 244 78 HOH HOH A . D 3 HOH 44 245 79 HOH HOH A . D 3 HOH 45 246 83 HOH HOH A . D 3 HOH 46 247 85 HOH HOH A . D 3 HOH 47 248 86 HOH HOH A . D 3 HOH 48 249 87 HOH HOH A . D 3 HOH 49 250 90 HOH HOH A . D 3 HOH 50 251 91 HOH HOH A . D 3 HOH 51 252 94 HOH HOH A . D 3 HOH 52 253 95 HOH HOH A . D 3 HOH 53 254 103 HOH HOH A . D 3 HOH 54 255 104 HOH HOH A . D 3 HOH 55 256 106 HOH HOH A . D 3 HOH 56 257 109 HOH HOH A . D 3 HOH 57 258 114 HOH HOH A . D 3 HOH 58 259 117 HOH HOH A . D 3 HOH 59 260 119 HOH HOH A . D 3 HOH 60 261 120 HOH HOH A . D 3 HOH 61 262 121 HOH HOH A . D 3 HOH 62 263 122 HOH HOH A . D 3 HOH 63 264 124 HOH HOH A . E 3 HOH 1 116 7 HOH HOH B . E 3 HOH 2 117 8 HOH HOH B . E 3 HOH 3 118 9 HOH HOH B . E 3 HOH 4 119 11 HOH HOH B . E 3 HOH 5 120 12 HOH HOH B . E 3 HOH 6 121 15 HOH HOH B . E 3 HOH 7 122 16 HOH HOH B . E 3 HOH 8 123 19 HOH HOH B . E 3 HOH 9 124 20 HOH HOH B . E 3 HOH 10 125 21 HOH HOH B . E 3 HOH 11 126 25 HOH HOH B . E 3 HOH 12 127 26 HOH HOH B . E 3 HOH 13 128 31 HOH HOH B . E 3 HOH 14 129 33 HOH HOH B . E 3 HOH 15 130 34 HOH HOH B . E 3 HOH 16 131 35 HOH HOH B . E 3 HOH 17 132 36 HOH HOH B . E 3 HOH 18 133 37 HOH HOH B . E 3 HOH 19 134 39 HOH HOH B . E 3 HOH 20 135 41 HOH HOH B . E 3 HOH 21 136 42 HOH HOH B . E 3 HOH 22 137 43 HOH HOH B . E 3 HOH 23 138 45 HOH HOH B . E 3 HOH 24 139 47 HOH HOH B . E 3 HOH 25 140 48 HOH HOH B . E 3 HOH 26 141 49 HOH HOH B . E 3 HOH 27 142 51 HOH HOH B . E 3 HOH 28 143 52 HOH HOH B . E 3 HOH 29 144 56 HOH HOH B . E 3 HOH 30 145 59 HOH HOH B . E 3 HOH 31 146 60 HOH HOH B . E 3 HOH 32 147 62 HOH HOH B . E 3 HOH 33 148 67 HOH HOH B . E 3 HOH 34 149 72 HOH HOH B . E 3 HOH 35 150 76 HOH HOH B . E 3 HOH 36 151 80 HOH HOH B . E 3 HOH 37 152 81 HOH HOH B . E 3 HOH 38 153 82 HOH HOH B . E 3 HOH 39 154 84 HOH HOH B . E 3 HOH 40 155 88 HOH HOH B . E 3 HOH 41 156 89 HOH HOH B . E 3 HOH 42 157 92 HOH HOH B . E 3 HOH 43 158 93 HOH HOH B . E 3 HOH 44 159 96 HOH HOH B . E 3 HOH 45 160 97 HOH HOH B . E 3 HOH 46 161 98 HOH HOH B . E 3 HOH 47 162 99 HOH HOH B . E 3 HOH 48 163 100 HOH HOH B . E 3 HOH 49 164 101 HOH HOH B . E 3 HOH 50 165 102 HOH HOH B . E 3 HOH 51 166 105 HOH HOH B . E 3 HOH 52 167 107 HOH HOH B . E 3 HOH 53 168 108 HOH HOH B . E 3 HOH 54 169 110 HOH HOH B . E 3 HOH 55 170 111 HOH HOH B . E 3 HOH 56 171 112 HOH HOH B . E 3 HOH 57 172 113 HOH HOH B . E 3 HOH 58 173 115 HOH HOH B . E 3 HOH 59 174 116 HOH HOH B . E 3 HOH 60 175 118 HOH HOH B . E 3 HOH 61 176 123 HOH HOH B . E 3 HOH 62 177 125 HOH HOH B . E 3 HOH 63 178 126 HOH HOH B . #