HEADER CYTOKINE 05-FEB-07 2OS5 TITLE MACROPHAGE MIGRATION INHIBITORY FACTOR FROM ANCYLOSTOMA CEYLANICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACEMIF; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANCYLOSTOMA CEYLANICUM; SOURCE 3 ORGANISM_TAXID: 53326; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS MACROPHAGE MIGRATION INHIBITORY FACTOR, CYTOKINE, NEMATODE, HOOKWORM EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHO,E.LOLIS REVDAT 5 21-FEB-24 2OS5 1 REMARK REVDAT 4 13-JUL-11 2OS5 1 VERSN REVDAT 3 24-FEB-09 2OS5 1 VERSN REVDAT 2 05-FEB-08 2OS5 1 JRNL REVDAT 1 12-JUN-07 2OS5 0 JRNL AUTH Y.CHO,B.F.JONES,J.J.VERMEIRE,L.LENG,L.DIFEDELE,L.M.HARRISON, JRNL AUTH 2 H.XIONG,Y.K.KWONG,Y.CHEN,R.BUCALA,E.LOLIS,M.CAPPELLO JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A SECRETED JRNL TITL 2 HOOKWORM MACROPHAGE MIGRATION INHIBITORY FACTOR (MIF) THAT JRNL TITL 3 INTERACTS WITH THE HUMAN MIF RECEPTOR CD74. JRNL REF J.BIOL.CHEM. V. 282 23447 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17567581 JRNL DOI 10.1074/JBC.M702950200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 88266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : -0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3720 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5052 ; 1.241 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 5.204 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;35.286 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;12.916 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.714 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2740 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1748 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2599 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 212 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 93 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2368 ; 0.606 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3864 ; 1.217 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1352 ; 2.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1188 ; 4.262 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-05; 17-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X29A; X29A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1; 0.9565,0.9791,0.9793 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88266 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, 0.2 M POTASSIUM SODIUM TARTRATE, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.63000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 99.63000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.63000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 99.63000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 99.63000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 99.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 57.67000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 99.88737 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -57.67000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 99.88737 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 42980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -296.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 57.67000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 99.88737 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -57.67000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 99.88737 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 57.67000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 99.88737 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -57.67000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 99.88737 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 57.67000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 99.88737 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 99.63000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 99.63000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -57.67000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 99.88737 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 99.63000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O4 SO4 B 204 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 382 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET C 0 REMARK 465 MET D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 201 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUENCE IS UNAVAILABLE IN UNIPROT DATABASE AT THE REMARK 999 TIME OF PROCESSING. DBREF 2OS5 A 0 118 UNP A4GRE3 A4GRE3_9BILA 1 119 DBREF 2OS5 B 0 118 UNP A4GRE3 A4GRE3_9BILA 1 119 DBREF 2OS5 C 0 118 UNP A4GRE3 A4GRE3_9BILA 1 119 DBREF 2OS5 D 0 118 UNP A4GRE3 A4GRE3_9BILA 1 119 SEQRES 1 A 119 MET PRO MET VAL ARG VAL ALA THR ASN LEU PRO ASP LYS SEQRES 2 A 119 ASP VAL PRO ALA ASN PHE GLU GLU ARG LEU THR ASP LEU SEQRES 3 A 119 LEU ALA GLU SER MET ASN LYS PRO ARG ASN ARG ILE ALA SEQRES 4 A 119 ILE GLU VAL LEU ALA GLY GLN ARG ILE THR HIS GLY ALA SEQRES 5 A 119 SER ARG ASN PRO VAL ALA VAL ILE LYS VAL GLU SER ILE SEQRES 6 A 119 GLY ALA LEU SER ALA ASP ASP ASN ILE ARG HIS THR GLN SEQRES 7 A 119 LYS ILE THR GLN PHE CYS GLN ASP THR LEU LYS LEU PRO SEQRES 8 A 119 LYS ASP LYS VAL ILE ILE THR TYR PHE ASP LEU GLN PRO SEQRES 9 A 119 ILE HIS VAL GLY PHE ASN GLY THR THR VAL ALA ALA ALA SEQRES 10 A 119 THR MET SEQRES 1 B 119 MET PRO MET VAL ARG VAL ALA THR ASN LEU PRO ASP LYS SEQRES 2 B 119 ASP VAL PRO ALA ASN PHE GLU GLU ARG LEU THR ASP LEU SEQRES 3 B 119 LEU ALA GLU SER MET ASN LYS PRO ARG ASN ARG ILE ALA SEQRES 4 B 119 ILE GLU VAL LEU ALA GLY GLN ARG ILE THR HIS GLY ALA SEQRES 5 B 119 SER ARG ASN PRO VAL ALA VAL ILE LYS VAL GLU SER ILE SEQRES 6 B 119 GLY ALA LEU SER ALA ASP ASP ASN ILE ARG HIS THR GLN SEQRES 7 B 119 LYS ILE THR GLN PHE CYS GLN ASP THR LEU LYS LEU PRO SEQRES 8 B 119 LYS ASP LYS VAL ILE ILE THR TYR PHE ASP LEU GLN PRO SEQRES 9 B 119 ILE HIS VAL GLY PHE ASN GLY THR THR VAL ALA ALA ALA SEQRES 10 B 119 THR MET SEQRES 1 C 119 MET PRO MET VAL ARG VAL ALA THR ASN LEU PRO ASP LYS SEQRES 2 C 119 ASP VAL PRO ALA ASN PHE GLU GLU ARG LEU THR ASP LEU SEQRES 3 C 119 LEU ALA GLU SER MET ASN LYS PRO ARG ASN ARG ILE ALA SEQRES 4 C 119 ILE GLU VAL LEU ALA GLY GLN ARG ILE THR HIS GLY ALA SEQRES 5 C 119 SER ARG ASN PRO VAL ALA VAL ILE LYS VAL GLU SER ILE SEQRES 6 C 119 GLY ALA LEU SER ALA ASP ASP ASN ILE ARG HIS THR GLN SEQRES 7 C 119 LYS ILE THR GLN PHE CYS GLN ASP THR LEU LYS LEU PRO SEQRES 8 C 119 LYS ASP LYS VAL ILE ILE THR TYR PHE ASP LEU GLN PRO SEQRES 9 C 119 ILE HIS VAL GLY PHE ASN GLY THR THR VAL ALA ALA ALA SEQRES 10 C 119 THR MET SEQRES 1 D 119 MET PRO MET VAL ARG VAL ALA THR ASN LEU PRO ASP LYS SEQRES 2 D 119 ASP VAL PRO ALA ASN PHE GLU GLU ARG LEU THR ASP LEU SEQRES 3 D 119 LEU ALA GLU SER MET ASN LYS PRO ARG ASN ARG ILE ALA SEQRES 4 D 119 ILE GLU VAL LEU ALA GLY GLN ARG ILE THR HIS GLY ALA SEQRES 5 D 119 SER ARG ASN PRO VAL ALA VAL ILE LYS VAL GLU SER ILE SEQRES 6 D 119 GLY ALA LEU SER ALA ASP ASP ASN ILE ARG HIS THR GLN SEQRES 7 D 119 LYS ILE THR GLN PHE CYS GLN ASP THR LEU LYS LEU PRO SEQRES 8 D 119 LYS ASP LYS VAL ILE ILE THR TYR PHE ASP LEU GLN PRO SEQRES 9 D 119 ILE HIS VAL GLY PHE ASN GLY THR THR VAL ALA ALA ALA SEQRES 10 D 119 THR MET HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 B 204 5 HET SO4 D 201 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *278(H2 O) HELIX 1 1 PRO A 10 VAL A 14 5 5 HELIX 2 2 ASN A 17 ASN A 31 1 15 HELIX 3 3 PRO A 33 ILE A 37 5 5 HELIX 4 4 SER A 68 LYS A 88 1 21 HELIX 5 5 PRO A 90 ASP A 92 5 3 HELIX 6 6 GLN A 102 HIS A 105 5 4 HELIX 7 7 VAL A 113 THR A 117 1 5 HELIX 8 8 PRO B 10 VAL B 14 5 5 HELIX 9 9 ASN B 17 ASN B 31 1 15 HELIX 10 10 PRO B 33 ARG B 36 5 4 HELIX 11 11 SER B 68 LYS B 88 1 21 HELIX 12 12 PRO B 90 ASP B 92 5 3 HELIX 13 13 GLN B 102 ILE B 104 5 3 HELIX 14 14 ALA B 114 THR B 117 5 4 HELIX 15 15 PRO C 10 VAL C 14 5 5 HELIX 16 16 ASN C 17 ASN C 31 1 15 HELIX 17 17 PRO C 33 ARG C 36 5 4 HELIX 18 18 SER C 68 LYS C 88 1 21 HELIX 19 19 PRO C 90 ASP C 92 5 3 HELIX 20 20 GLN C 102 ILE C 104 5 3 HELIX 21 21 ALA C 114 THR C 117 5 4 HELIX 22 22 PRO D 10 VAL D 14 5 5 HELIX 23 23 ASN D 17 ASN D 31 1 15 HELIX 24 24 PRO D 33 ARG D 36 5 4 HELIX 25 25 SER D 68 LYS D 88 1 21 HELIX 26 26 PRO D 90 ASP D 92 5 3 HELIX 27 27 GLN D 102 ILE D 104 5 3 HELIX 28 28 VAL D 113 THR D 117 1 5 SHEET 1 A 4 ALA A 38 LEU A 42 0 SHEET 2 A 4 MET A 2 THR A 7 1 N VAL A 5 O LEU A 42 SHEET 3 A 4 ALA A 57 SER A 63 -1 O VAL A 58 N ALA A 6 SHEET 4 A 4 VAL A 94 ASP A 100 1 O ILE A 95 N ILE A 59 SHEET 1 B 2 GLY A 107 PHE A 108 0 SHEET 2 B 2 THR A 111 THR A 112 -1 O THR A 111 N PHE A 108 SHEET 1 C 7 THR C 111 THR C 112 0 SHEET 2 C 7 VAL C 106 PHE C 108 -1 N PHE C 108 O THR C 111 SHEET 3 C 7 VAL B 94 ASP B 100 -1 N ILE B 96 O GLY C 107 SHEET 4 C 7 ALA B 57 SER B 63 1 N ILE B 59 O ILE B 95 SHEET 5 C 7 MET B 2 THR B 7 -1 N ALA B 6 O VAL B 58 SHEET 6 C 7 ALA B 38 LEU B 42 1 O LEU B 42 N VAL B 5 SHEET 7 C 7 ARG D 46 HIS D 49 -1 O THR D 48 N ILE B 39 SHEET 1 D 7 ARG B 46 HIS B 49 0 SHEET 2 D 7 ALA C 38 LEU C 42 -1 O VAL C 41 N ARG B 46 SHEET 3 D 7 MET C 2 THR C 7 1 N VAL C 5 O LEU C 42 SHEET 4 D 7 ALA C 57 SER C 63 -1 O VAL C 58 N ALA C 6 SHEET 5 D 7 VAL C 94 ASP C 100 1 O ILE C 95 N ILE C 59 SHEET 6 D 7 VAL D 106 PHE D 108 -1 O GLY D 107 N ILE C 96 SHEET 7 D 7 THR D 111 THR D 112 -1 O THR D 111 N PHE D 108 SHEET 1 E 7 THR B 111 THR B 112 0 SHEET 2 E 7 VAL B 106 PHE B 108 -1 N PHE B 108 O THR B 111 SHEET 3 E 7 VAL D 94 ASP D 100 -1 O ILE D 96 N GLY B 107 SHEET 4 E 7 ALA D 57 SER D 63 1 N ILE D 59 O ILE D 95 SHEET 5 E 7 MET D 2 THR D 7 -1 N MET D 2 O GLU D 62 SHEET 6 E 7 ALA D 38 LEU D 42 1 O GLU D 40 N VAL D 5 SHEET 7 E 7 ARG C 46 HIS C 49 -1 N ARG C 46 O VAL D 41 SITE 1 AC1 6 ASN A 54 LYS A 93 HOH A 416 ARG C 53 SITE 2 AC1 6 HOH C 356 HOH C 506 SITE 1 AC2 4 PRO A 33 ARG A 34 HOH A 395 HOH A 489 SITE 1 AC3 3 SER B 68 HOH B 375 HOH B 436 SITE 1 AC4 6 HOH A 367 HOH A 373 HOH A 562 HOH C 363 SITE 2 AC4 6 HOH C 486 HOH D 372 CRYST1 115.340 115.340 199.260 90.00 90.00 120.00 P 63 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008670 0.005006 0.000000 0.00000 SCALE2 0.000000 0.010011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005019 0.00000