HEADER TRANSFERASE 05-FEB-07 2OSB TITLE CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF BACILLUS SUBTILIS TITLE 2 ADENYLATE KINASE (Q16L/Q199R/) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATP-AMP TRANSPHOSPHORYLASE, AK, SUPEROXIDE-INDUCIBLE PROTEIN COMPND 5 16, SOI16; COMPND 6 EC: 2.7.4.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: ADK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS THERMOSTABILITY, ADENYLATE KINASE, EXPERIMENTAL ADAPTIVE EVOLUTION, KEYWDS 2 DIRECTED EVOLUTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.MYERS,R.COUNAGO,C.J.WILSON,G.WU,Y.SHAMOO REVDAT 5 30-AUG-23 2OSB 1 REMARK REVDAT 4 20-OCT-21 2OSB 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2OSB 1 REMARK REVDAT 2 24-FEB-09 2OSB 1 VERSN REVDAT 1 15-JAN-08 2OSB 0 JRNL AUTH R.COUNAGO,C.J.WILSON,J.MYERS,G.WU,Y.SHAMOO, JRNL AUTH 2 P.WITTUNG-STAFSHEDE JRNL TITL CRYSTAL STRUCTURE OF A THERMOSTABLE MUTANT OF BACILLUS JRNL TITL 2 SUBTILIS ADENYLATE KINASE (Q16L/Q199R/) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 34813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1781 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.07600 REMARK 3 B22 (A**2) : 1.92800 REMARK 3 B33 (A**2) : 5.14900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.13800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.184 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.741 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.871 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.755 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 30.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : AP5_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2EU8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CHESS, PEG 1500, CACL2, PH 9.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.15850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 57 O HOH A 1336 1.78 REMARK 500 OE2 GLU A 166 O HOH A 1318 1.80 REMARK 500 OD1 ASP B 116 O HOH B 1245 1.96 REMARK 500 OE1 GLU B 102 O HOH B 1236 1.97 REMARK 500 O HOH B 1302 O HOH B 1324 2.05 REMARK 500 O GLY A 213 O HOH A 1300 2.06 REMARK 500 O HOH A 1301 O HOH A 1358 2.14 REMARK 500 CD GLU A 57 O HOH A 1336 2.17 REMARK 500 OE1 GLU A 97 O HOH A 1273 2.18 REMARK 500 CG GLU A 57 O HOH A 1336 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 116 C LYS B 117 N -0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 201 CA - C - N ANGL. DEV. = 15.6 DEGREES REMARK 500 ILE A 201 O - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 GLN A 202 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP B 116 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 67.25 -165.31 REMARK 500 ASP A 163 42.29 -87.63 REMARK 500 GLN A 198 41.37 -105.55 REMARK 500 LEU A 215 50.10 -94.33 REMARK 500 ASP B 118 13.24 -60.56 REMARK 500 VAL B 132 -66.78 -98.08 REMARK 500 ASN B 142 68.99 -159.13 REMARK 500 GLN B 198 54.83 -98.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 118 -11.54 REMARK 500 ASP B 118 -12.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1220 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 CYS A 133 SG 111.3 REMARK 620 3 CYS A 150 SG 105.4 110.9 REMARK 620 4 ASP A 153 OD2 124.4 97.1 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1221 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 130 SG REMARK 620 2 CYS B 133 SG 109.3 REMARK 620 3 CYS B 150 SG 107.0 110.4 REMARK 620 4 ASP B 153 OD2 115.8 99.4 114.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 A 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AP5 B 1219 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EU8 RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF BACILLUS SUBTILIS ADENYLATE KINASE (Q199R) REMARK 900 RELATED ID: 2ORI RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF BACILLUS SUBTILIS ADENYLATE KINASE (A193V/ REMARK 900 Q199R) REMARK 900 RELATED ID: 1P3J RELATED DB: PDB REMARK 900 ADENYLATE KINASE FROM BACILLUS SUBTILIS DBREF 2OSB A 1 216 UNP P16304 KAD_BACSU 1 216 DBREF 2OSB B 1 216 UNP P16304 KAD_BACSU 1 216 SEQADV 2OSB LEU A 16 UNP P16304 GLN 16 ENGINEERED MUTATION SEQADV 2OSB ARG A 199 UNP P16304 GLN 199 ENGINEERED MUTATION SEQADV 2OSB LEU B 16 UNP P16304 GLN 16 ENGINEERED MUTATION SEQADV 2OSB ARG B 199 UNP P16304 GLN 199 ENGINEERED MUTATION SEQRES 1 A 216 MET ASN LEU VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 A 216 GLY THR LEU GLY GLU ARG ILE VAL GLU ASP TYR GLY ILE SEQRES 3 A 216 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA MET SEQRES 4 A 216 LYS GLU GLU THR PRO LEU GLY LEU GLU ALA LYS SER TYR SEQRES 5 A 216 ILE ASP LYS GLY GLU LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 A 216 GLY ILE VAL LYS GLU ARG LEU GLY LYS ASP ASP CYS GLU SEQRES 7 A 216 ARG GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL ALA SEQRES 8 A 216 GLN ALA GLU ALA LEU GLU GLU ILE LEU GLU GLU TYR GLY SEQRES 9 A 216 LYS PRO ILE ASP TYR VAL ILE ASN ILE GLU VAL ASP LYS SEQRES 10 A 216 ASP VAL LEU MET GLU ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 A 216 SER VAL CYS GLY THR THR TYR HIS LEU VAL PHE ASN PRO SEQRES 12 A 216 PRO LYS THR PRO GLY ILE CYS ASP LYS ASP GLY GLY GLU SEQRES 13 A 216 LEU TYR GLN ARG ALA ASP ASP ASN GLU GLU THR VAL SER SEQRES 14 A 216 LYS ARG LEU GLU VAL ASN MET LYS GLN THR GLN PRO LEU SEQRES 15 A 216 LEU ASP PHE TYR SER GLU LYS GLY TYR LEU ALA ASN VAL SEQRES 16 A 216 ASN GLY GLN ARG ASP ILE GLN ASP VAL TYR ALA ASP VAL SEQRES 17 A 216 LYS ASP LEU LEU GLY GLY LEU LYS SEQRES 1 B 216 MET ASN LEU VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 B 216 GLY THR LEU GLY GLU ARG ILE VAL GLU ASP TYR GLY ILE SEQRES 3 B 216 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA MET SEQRES 4 B 216 LYS GLU GLU THR PRO LEU GLY LEU GLU ALA LYS SER TYR SEQRES 5 B 216 ILE ASP LYS GLY GLU LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 B 216 GLY ILE VAL LYS GLU ARG LEU GLY LYS ASP ASP CYS GLU SEQRES 7 B 216 ARG GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL ALA SEQRES 8 B 216 GLN ALA GLU ALA LEU GLU GLU ILE LEU GLU GLU TYR GLY SEQRES 9 B 216 LYS PRO ILE ASP TYR VAL ILE ASN ILE GLU VAL ASP LYS SEQRES 10 B 216 ASP VAL LEU MET GLU ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 B 216 SER VAL CYS GLY THR THR TYR HIS LEU VAL PHE ASN PRO SEQRES 12 B 216 PRO LYS THR PRO GLY ILE CYS ASP LYS ASP GLY GLY GLU SEQRES 13 B 216 LEU TYR GLN ARG ALA ASP ASP ASN GLU GLU THR VAL SER SEQRES 14 B 216 LYS ARG LEU GLU VAL ASN MET LYS GLN THR GLN PRO LEU SEQRES 15 B 216 LEU ASP PHE TYR SER GLU LYS GLY TYR LEU ALA ASN VAL SEQRES 16 B 216 ASN GLY GLN ARG ASP ILE GLN ASP VAL TYR ALA ASP VAL SEQRES 17 B 216 LYS ASP LEU LEU GLY GLY LEU LYS HET ZN A1220 1 HET MG A1223 1 HET AP5 A1218 57 HET ZN B1221 1 HET MG B1222 1 HET AP5 B1219 57 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 AP5 2(C20 H29 N10 O22 P5) FORMUL 9 HOH *277(H2 O) HELIX 1 1 GLY A 12 GLY A 25 1 14 HELIX 2 2 THR A 31 GLU A 42 1 12 HELIX 3 3 THR A 43 GLY A 56 1 14 HELIX 4 4 PRO A 60 GLY A 73 1 14 HELIX 5 5 LYS A 74 GLU A 78 5 5 HELIX 6 6 THR A 89 GLY A 104 1 16 HELIX 7 7 ASP A 116 ASP A 118 5 3 HELIX 8 8 VAL A 119 GLY A 126 1 8 HELIX 9 9 ASN A 164 GLY A 190 1 27 HELIX 10 10 ASP A 200 ASP A 210 1 11 HELIX 11 11 GLY B 12 GLY B 25 1 14 HELIX 12 12 THR B 31 GLU B 41 1 11 HELIX 13 13 THR B 43 ASP B 54 1 12 HELIX 14 14 PRO B 60 LEU B 72 1 13 HELIX 15 15 GLY B 73 GLU B 78 5 6 HELIX 16 16 THR B 89 GLY B 104 1 16 HELIX 17 17 ASP B 116 VAL B 119 5 4 HELIX 18 18 LEU B 120 GLY B 126 1 7 HELIX 19 19 ARG B 160 ASP B 163 5 4 HELIX 20 20 ASN B 164 GLY B 190 1 27 HELIX 21 21 ASP B 200 GLY B 213 1 14 SHEET 1 A 5 HIS A 28 SER A 30 0 SHEET 2 A 5 PHE A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 A 5 ASN A 2 MET A 6 1 N LEU A 3 O LEU A 83 SHEET 4 A 5 TYR A 109 GLU A 114 1 O ILE A 111 N VAL A 4 SHEET 5 A 5 LEU A 192 ASN A 196 1 O ALA A 193 N ASN A 112 SHEET 1 B 3 THR A 136 HIS A 138 0 SHEET 2 B 3 ARG A 127 CYS A 130 -1 N ARG A 128 O TYR A 137 SHEET 3 B 3 LEU A 157 TYR A 158 -1 O TYR A 158 N ILE A 129 SHEET 1 C 5 HIS B 28 SER B 30 0 SHEET 2 C 5 PHE B 81 ASP B 84 1 O LEU B 82 N ILE B 29 SHEET 3 C 5 ASN B 2 MET B 6 1 N LEU B 3 O LEU B 83 SHEET 4 C 5 TYR B 109 GLU B 114 1 O ILE B 111 N MET B 6 SHEET 5 C 5 LEU B 192 ASN B 196 1 O ALA B 193 N VAL B 110 SHEET 1 D 3 THR B 136 HIS B 138 0 SHEET 2 D 3 ARG B 127 CYS B 130 -1 N ARG B 128 O TYR B 137 SHEET 3 D 3 LEU B 157 TYR B 158 -1 O TYR B 158 N ILE B 129 LINK SG CYS A 130 ZN ZN A1220 1555 1555 2.34 LINK SG CYS A 133 ZN ZN A1220 1555 1555 2.40 LINK SG CYS A 150 ZN ZN A1220 1555 1555 2.36 LINK OD2 ASP A 153 ZN ZN A1220 1555 1555 2.22 LINK O2G AP5 A1218 MG MG A1223 1555 1555 2.50 LINK SG CYS B 130 ZN ZN B1221 1555 1555 2.35 LINK SG CYS B 133 ZN ZN B1221 1555 1555 2.63 LINK SG CYS B 150 ZN ZN B1221 1555 1555 2.45 LINK OD2 ASP B 153 ZN ZN B1221 1555 1555 2.38 LINK MG MG B1222 O HOH B1288 1555 1555 2.49 CISPEP 1 PHE A 86 PRO A 87 0 0.21 CISPEP 2 PHE B 86 PRO B 87 0 -0.09 SITE 1 AC1 4 CYS A 130 CYS A 133 CYS A 150 ASP A 153 SITE 1 AC2 4 CYS B 130 CYS B 133 CYS B 150 ASP B 153 SITE 1 AC3 2 AP5 B1219 HOH B1288 SITE 1 AC4 4 AP5 A1218 HOH A1252 HOH A1255 HOH A1377 SITE 1 AC5 37 PRO A 9 GLY A 10 ALA A 11 GLY A 12 SITE 2 AC5 37 LYS A 13 GLY A 14 THR A 15 THR A 31 SITE 3 AC5 37 GLY A 32 ILE A 53 GLU A 57 LEU A 58 SITE 4 AC5 37 VAL A 59 GLY A 85 PHE A 86 ARG A 88 SITE 5 AC5 37 GLN A 92 ARG A 123 ARG A 127 THR A 136 SITE 6 AC5 37 TYR A 137 HIS A 138 PHE A 141 ARG A 160 SITE 7 AC5 37 ARG A 171 ARG A 199 ILE A 201 MG A1223 SITE 8 AC5 37 HOH A1231 HOH A1240 HOH A1241 HOH A1255 SITE 9 AC5 37 HOH A1259 HOH A1271 HOH A1292 HOH A1327 SITE 10 AC5 37 HOH A1377 SITE 1 AC6 35 PRO B 9 GLY B 10 ALA B 11 GLY B 12 SITE 2 AC6 35 LYS B 13 GLY B 14 THR B 15 THR B 31 SITE 3 AC6 35 GLY B 32 PHE B 35 ARG B 36 ILE B 53 SITE 4 AC6 35 GLU B 57 VAL B 59 THR B 64 GLY B 85 SITE 5 AC6 35 PHE B 86 ARG B 88 GLN B 92 ARG B 123 SITE 6 AC6 35 ARG B 127 THR B 136 TYR B 137 HIS B 138 SITE 7 AC6 35 PHE B 141 ARG B 160 ARG B 171 GLY B 197 SITE 8 AC6 35 ARG B 199 ILE B 201 MG B1222 HOH B1226 SITE 9 AC6 35 HOH B1235 HOH B1270 HOH B1307 CRYST1 34.578 74.317 77.418 90.00 100.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028920 0.000000 0.005209 0.00000 SCALE2 0.000000 0.013456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013125 0.00000