HEADER METAL BINDING PROTEIN 06-FEB-07 2OSO TITLE CRYSTAL STRUCTURE OF A VINYL-4-REDUCTASE FAMILY PROTEIN (MJ_1460) FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII DSM AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN MJ1460; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: V4R DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661, JAL-1, JCM 10045, NBRC 100440; SOURCE 5 ATCC: 43067; SOURCE 6 GENE: 1592102, MJ1460; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 15-NOV-23 2OSO 1 REMARK REVDAT 8 20-SEP-23 2OSO 1 REMARK REVDAT 7 25-JAN-23 2OSO 1 SEQADV REVDAT 6 20-OCT-21 2OSO 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2OSO 1 REMARK REVDAT 4 13-JUL-11 2OSO 1 VERSN REVDAT 3 23-MAR-11 2OSO 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2OSO 1 VERSN REVDAT 1 20-FEB-07 2OSO 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN MJ_1460 (1592102) JRNL TITL 2 FROM METHANOCALDOCOCCUS JANNASCHII AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 14719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 743 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -1.90000 REMARK 3 B12 (A**2) : 0.63000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.428 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1369 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 960 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1846 ; 1.615 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2373 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 168 ; 6.228 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;42.677 ;26.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;16.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 198 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1490 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 253 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 281 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 919 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 649 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 673 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.097 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 934 ; 1.579 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 327 ; 0.342 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1350 ; 2.231 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 602 ; 1.579 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 496 ; 2.251 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0958 18.4295 0.0775 REMARK 3 T TENSOR REMARK 3 T11: -0.1101 T22: -0.0121 REMARK 3 T33: -0.0537 T12: 0.0911 REMARK 3 T13: 0.0322 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.1489 L22: 2.4361 REMARK 3 L33: 2.6683 L12: -0.8211 REMARK 3 L13: 0.5308 L23: 0.4550 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: -0.0986 S13: -0.0299 REMARK 3 S21: 0.0008 S22: 0.0460 S23: -0.1223 REMARK 3 S31: 0.0502 S32: 0.1773 S33: 0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6948 24.2862 17.4951 REMARK 3 T TENSOR REMARK 3 T11: -0.0831 T22: -0.0132 REMARK 3 T33: -0.0611 T12: 0.1191 REMARK 3 T13: -0.0018 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.7870 L22: 1.6731 REMARK 3 L33: 2.8665 L12: -0.3261 REMARK 3 L13: -0.1572 L23: 0.0647 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.1329 S13: 0.0156 REMARK 3 S21: 0.2617 S22: 0.0954 S23: 0.0346 REMARK 3 S31: -0.0922 S32: 0.0120 S33: -0.0552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. RESIDUES 45-46 ARE DISORDERED AND NOT VISIBLE REMARK 3 IN THE ELECTRON DENSITY MAPS. THEY WERE NOT MODELED. REMARK 3 5. TWO GLYCEROLS, ONE ACETATE, ONE CL ION FROM THE REMARK 3 CRYSTALLIZATION BUFFER WERE MODELED INTO THE STRUCTURE. REMARK 3 6. A ZN ATOM OF THE SUBUNIT IN THE ASYMMETRIC UNIT REMARK 3 IS COORDINATED TO THE SIDE CHAINS OF HIS 116, GLU 139, REMARK 3 CYS 142 AND CYS 150. X-RAY FLUORESCENCE EXPERIMENTS SUPPORT REMARK 3 THE ASSIGNMENT OF THE ZINC ION. REMARK 4 REMARK 4 2OSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14775 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 28.736 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OSD REMARK 200 REMARK 200 REMARK: TWO CRYSTALS WERE USED FOR THE SOLUTION OF THIS STRUCTURE. REMARK 200 A 2.30 ANGSTROM MAD DATA COLLECTED FROM ONE CRYSTAL WAS USED TO REMARK 200 PHASE AND TRACE AN INITIAL MODEL. THE MODEL WAS THEN REFINED REMARK 200 USING THE AMPLITUDES FROM A SECOND CRYSTAL THAT DIFFRACTED TO AN REMARK 200 ENHANCED RESOLUTION OF 1.90 ANGSTROM. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 15.0% GLYCEROL, 0.17M NAOAC, REMARK 280 25.5% PEG 4000, 0.1M TRIS-HCL PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.46667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.93333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.93333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 45 REMARK 465 LEU A 46 REMARK 465 GLU A 159 REMARK 465 LEU A 160 REMARK 465 ASN A 161 REMARK 465 LYS A 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 16 CD NE CZ NH1 NH2 REMARK 470 GLU A 19 OE1 OE2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 SER A 48 OG REMARK 470 LYS A 61 NZ REMARK 470 LYS A 66 CD CE NZ REMARK 470 LYS A 73 NZ REMARK 470 GLU A 113 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 48 -154.68 -117.82 REMARK 500 SER A 48 -157.43 -117.82 REMARK 500 THR A 50 -167.67 -161.81 REMARK 500 HIS A 116 58.01 -99.01 REMARK 500 TYR A 132 -41.34 86.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 163 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 ND1 REMARK 620 2 GLU A 139 OE2 121.5 REMARK 620 3 CYS A 142 SG 101.7 108.6 REMARK 620 4 CYS A 150 SG 105.1 104.1 116.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 373077 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2OSD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN MJ_1460 (1592102) FROM REMARK 900 METHANOCOCCUS JANNASCHII AT 2.30 A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 2. THE CONSTRUCT WAS ENGINEERED WITH THE FOLLOWING REMARK 999 MUTATIONS: K132Y, K133Y AND K134Y DBREF 2OSO A 1 162 UNP Q58855 Y1460_METJA 1 162 SEQADV 2OSO GLY A 0 UNP Q58855 EXPRESSION TAG SEQADV 2OSO MSE A 1 UNP Q58855 MET 1 MODIFIED RESIDUE SEQADV 2OSO MSE A 4 UNP Q58855 MET 4 MODIFIED RESIDUE SEQADV 2OSO MSE A 29 UNP Q58855 MET 29 MODIFIED RESIDUE SEQADV 2OSO MSE A 62 UNP Q58855 MET 62 MODIFIED RESIDUE SEQADV 2OSO MSE A 78 UNP Q58855 MET 78 MODIFIED RESIDUE SEQADV 2OSO TYR A 132 UNP Q58855 LYS 132 ENGINEERED MUTATION SEQADV 2OSO TYR A 133 UNP Q58855 LYS 133 ENGINEERED MUTATION SEQADV 2OSO TYR A 134 UNP Q58855 LYS 134 ENGINEERED MUTATION SEQRES 1 A 163 GLY MSE ALA PHE MSE GLU LYS ILE PHE PRO ASP ILE LEU SEQRES 2 A 163 GLU ALA ILE ARG ASN GLU GLU ILE ILE LYS GLU SER LYS SEQRES 3 A 163 LYS ILE PRO MSE PRO TYR PHE GLY LEU PHE ALA LEU VAL SEQRES 4 A 163 ILE PHE ASP LYS VAL LYS GLU LEU GLY SER GLU THR SER SEQRES 5 A 163 LEU TYR GLU ILE GLY GLU GLU PHE GLY LYS MSE LEU SER SEQRES 6 A 163 PRO LYS ASN ILE GLU GLU LEU LYS LYS ILE PHE LYS LEU SEQRES 7 A 163 MSE ASN PHE GLY ASP LEU GLU ILE ASP GLU ASN LYS ILE SEQRES 8 A 163 LEU LEU LYS ASN PRO PRO TYR LYS ILE LYS LEU SER ASN SEQRES 9 A 163 PRO PRO TYR GLN TRP VAL SER LYS GLU GLU PRO ILE HIS SEQRES 10 A 163 ASP PHE ILE ALA GLY ILE LEU ALA GLY CYS LEU GLU GLU SEQRES 11 A 163 ILE PHE TYR TYR TYR PHE VAL VAL ASN GLU VAL GLU CYS SEQRES 12 A 163 VAL SER GLN GLY LYS ASP LYS CYS VAL PHE GLU VAL LYS SEQRES 13 A 163 GLU VAL ASP GLU LEU ASN LYS MODRES 2OSO MSE A 1 MET SELENOMETHIONINE MODRES 2OSO MSE A 4 MET SELENOMETHIONINE MODRES 2OSO MSE A 29 MET SELENOMETHIONINE MODRES 2OSO MSE A 62 MET SELENOMETHIONINE MODRES 2OSO MSE A 78 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 4 8 HET MSE A 29 16 HET MSE A 62 16 HET MSE A 78 8 HET ZN A 163 1 HET CL A 164 1 HET ACT A 165 4 HET GOL A 166 6 HET GOL A 167 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *81(H2 O) HELIX 1 1 ILE A 7 ILE A 15 1 9 HELIX 2 2 ASN A 17 SER A 24 1 8 HELIX 3 3 PRO A 28 LYS A 44 1 17 HELIX 4 4 SER A 51 SER A 64 1 14 HELIX 5 5 ASN A 67 MSE A 78 1 12 HELIX 6 6 ASP A 86 LYS A 93 1 8 HELIX 7 7 HIS A 116 TYR A 132 1 17 HELIX 8 8 CYS A 142 GLY A 146 5 5 SHEET 1 A 4 ASP A 82 GLU A 84 0 SHEET 2 A 4 TYR A 97 SER A 102 -1 O LYS A 100 N GLU A 84 SHEET 3 A 4 CYS A 150 VAL A 157 -1 O PHE A 152 N ILE A 99 SHEET 4 A 4 TYR A 134 GLU A 141 -1 N ASN A 138 O GLU A 153 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ALA A 2 1555 1555 1.34 LINK C PHE A 3 N MSE A 4 1555 1555 1.32 LINK C MSE A 4 N GLU A 5 1555 1555 1.34 LINK C PRO A 28 N AMSE A 29 1555 1555 1.33 LINK C PRO A 28 N BMSE A 29 1555 1555 1.33 LINK C AMSE A 29 N PRO A 30 1555 1555 1.34 LINK C BMSE A 29 N PRO A 30 1555 1555 1.34 LINK C ALYS A 61 N AMSE A 62 1555 1555 1.34 LINK C BLYS A 61 N BMSE A 62 1555 1555 1.33 LINK C BMSE A 62 N LEU A 63 1555 1555 1.33 LINK C AMSE A 62 N LEU A 63 1555 1555 1.33 LINK C LEU A 77 N MSE A 78 1555 1555 1.33 LINK C MSE A 78 N ASN A 79 1555 1555 1.34 LINK ND1 HIS A 116 ZN ZN A 163 1555 1555 2.05 LINK OE2 GLU A 139 ZN ZN A 163 1555 1555 1.88 LINK SG CYS A 142 ZN ZN A 163 1555 1555 2.36 LINK SG CYS A 150 ZN ZN A 163 1555 1555 2.29 CISPEP 1 PRO A 95 PRO A 96 0 1.44 SITE 1 AC1 4 HIS A 116 GLU A 139 CYS A 142 CYS A 150 SITE 1 AC2 5 LYS A 25 MSE A 29 TYR A 106 TRP A 108 SITE 2 AC2 5 HOH A 196 SITE 1 AC3 1 HOH A 173 SITE 1 AC4 5 ASP A 117 ALA A 120 ASN A 138 GLU A 139 SITE 2 AC4 5 HOH A 183 SITE 1 AC5 6 ILE A 90 TYR A 97 PHE A 131 TYR A 133 SITE 2 AC5 6 GLU A 156 HOH A 182 CRYST1 42.100 42.100 172.400 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023750 0.013710 0.000000 0.00000 SCALE2 0.000000 0.027430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005800 0.00000