HEADER RNA BINDING PROTEIN 06-FEB-07 2OSR TITLE NMR STRUCTURE OF RRM-2 OF YEAST NPL3 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLAR PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM 2 DOMAIN (RESIDUES 194-280); COMPND 5 SYNONYM: MITOCHONDRIAL TARGETING SUPPRESSOR 1 PROTEIN, NUCLEAR COMPND 6 POLYADENYLATED RNA-BINDING PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NOP3, MTS1, NAB1, NPL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-151 KEYWDS NPL3, RRM, SR PROTEIN, MRNA, RNA-BINDING, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.DEKA,M.BUCHELI,L.SKRISOVSKA,F.H.ALLAIN,C.MOORE,S.BURATOWSKI, AUTHOR 2 G.VARANI REVDAT 3 16-MAR-22 2OSR 1 REMARK REVDAT 2 24-FEB-09 2OSR 1 VERSN REVDAT 1 18-DEC-07 2OSR 0 JRNL AUTH P.DEKA,M.E.BUCHELI,C.MOORE,S.BURATOWSKI,G.VARANI JRNL TITL STRUCTURE OF THE YEAST SR PROTEIN NPL3 AND INTERACTION WITH JRNL TITL 2 MRNA 3'-END PROCESSING SIGNALS. JRNL REF J.MOL.BIOL. V. 375 136 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18022637 JRNL DOI 10.1016/J.JMB.2007.09.029 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OSR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041539. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE, 20MM REMARK 210 POTASSIUM CHLORIDE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; 3D_13C-SEPARATED_NOESY; REMARK 210 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 82 -169.45 -69.82 REMARK 500 1 LYS A 84 56.68 -104.94 REMARK 500 1 PRO A 94 66.26 -69.78 REMARK 500 1 CYS A 97 106.45 -48.96 REMARK 500 1 ASN A 146 86.14 60.24 REMARK 500 1 PRO A 164 -170.94 -69.74 REMARK 500 2 PRO A 82 -178.06 -69.83 REMARK 500 2 PRO A 94 64.64 -69.76 REMARK 500 2 CYS A 97 105.06 -48.71 REMARK 500 2 ASN A 146 86.86 60.77 REMARK 500 2 PRO A 164 -172.11 -69.78 REMARK 500 3 PRO A 82 -171.23 -69.75 REMARK 500 3 PRO A 94 64.76 -69.79 REMARK 500 3 CYS A 97 104.89 -48.80 REMARK 500 3 PHE A 123 69.09 64.53 REMARK 500 3 ASN A 146 88.61 60.00 REMARK 500 3 PRO A 164 -171.90 -69.71 REMARK 500 4 PRO A 82 -175.56 -69.79 REMARK 500 4 ALA A 83 114.21 -170.05 REMARK 500 4 PRO A 94 67.78 -69.80 REMARK 500 4 CYS A 97 106.74 -48.40 REMARK 500 4 ASN A 146 81.76 59.56 REMARK 500 4 PRO A 164 -177.60 -69.74 REMARK 500 5 LEU A 81 76.14 -114.53 REMARK 500 5 PRO A 82 -171.30 -69.77 REMARK 500 5 LYS A 84 56.46 -109.05 REMARK 500 5 TYR A 86 46.84 -142.77 REMARK 500 5 PRO A 94 66.57 -69.76 REMARK 500 5 CYS A 97 105.96 -48.73 REMARK 500 5 ASN A 146 86.55 60.56 REMARK 500 5 PRO A 164 -172.90 -69.79 REMARK 500 6 LEU A 81 74.51 -114.20 REMARK 500 6 PRO A 82 -171.80 -69.81 REMARK 500 6 PRO A 94 64.88 -69.82 REMARK 500 6 CYS A 97 108.98 -48.90 REMARK 500 6 PHE A 123 42.69 37.88 REMARK 500 6 ASN A 146 83.93 55.88 REMARK 500 6 PRO A 164 -175.95 -69.77 REMARK 500 7 PRO A 82 -178.86 -69.76 REMARK 500 7 PRO A 94 62.03 -69.77 REMARK 500 7 CYS A 97 104.82 -48.62 REMARK 500 7 ASN A 146 84.78 58.12 REMARK 500 7 PRO A 164 -176.98 -69.84 REMARK 500 8 LEU A 81 76.60 -164.82 REMARK 500 8 LYS A 84 58.01 -99.92 REMARK 500 8 PRO A 94 66.27 -69.76 REMARK 500 8 CYS A 97 105.56 -48.76 REMARK 500 8 ASN A 146 87.00 61.20 REMARK 500 8 PRO A 164 -176.51 -69.71 REMARK 500 9 PRO A 94 68.01 -69.67 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OSQ RELATED DB: PDB DBREF 2OSR A 80 166 UNP Q01560 NOP3_YEAST 194 280 SEQRES 1 A 87 LYS LEU PRO ALA LYS ARG TYR ARG ILE THR MET LYS ASN SEQRES 2 A 87 LEU PRO GLU GLY CYS SER TRP GLN ASP LEU LYS ASP LEU SEQRES 3 A 87 ALA ARG GLU ASN SER LEU GLU THR THR PHE SER SER VAL SEQRES 4 A 87 ASN THR ARG ASP PHE ASP GLY THR GLY ALA LEU GLU PHE SEQRES 5 A 87 PRO SER GLU GLU ILE LEU VAL GLU ALA LEU GLU ARG LEU SEQRES 6 A 87 ASN ASN ILE GLU PHE ARG GLY SER VAL ILE THR VAL GLU SEQRES 7 A 87 ARG ASP ASP ASN PRO PRO PRO ILE ARG HELIX 1 1 SER A 98 ASN A 109 1 12 HELIX 2 2 SER A 133 ASN A 145 1 13 SHEET 1 A 5 PHE A 115 VAL A 118 0 SHEET 2 A 5 GLY A 127 GLU A 130 -1 O ALA A 128 N SER A 117 SHEET 3 A 5 ARG A 87 LYS A 91 -1 N ILE A 88 O LEU A 129 SHEET 4 A 5 SER A 152 GLU A 157 -1 O GLU A 157 N THR A 89 SHEET 5 A 5 ILE A 147 PHE A 149 -1 N PHE A 149 O SER A 152 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1