HEADER CHAPERONE 07-FEB-07 2OT2 TITLE SOLUTION STRUCTURE OF HYPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROGENASE ISOENZYMES FORMATION PROTEIN HYPC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: HYPC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS BETA BARREL, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.WANG,C.JIN REVDAT 3 16-MAR-22 2OT2 1 REMARK REVDAT 2 24-FEB-09 2OT2 1 VERSN REVDAT 1 04-SEP-07 2OT2 0 JRNL AUTH L.WANG,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURE OF ESCHERICHIA COLI HYPC JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 361 665 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17669368 JRNL DOI 10.1016/J.BBRC.2007.07.094 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1.0, AMBER REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), REMARK 3 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH, REMARK 3 WEINER,KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OT2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041550. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 60MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM HYPC; 30MM PHOSPHATE REMARK 210 BUFFER(PH 7.0); 20MM REMARK 210 DITHIOTHREITOL; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 2.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, TORSION ANGLE REMARK 210 DYNAMICS, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 29 HG1 THR A 31 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 9 79.97 -68.47 REMARK 500 1 LYS A 18 78.25 -114.48 REMARK 500 1 PHE A 75 -19.43 -140.86 REMARK 500 3 HIS A 51 -60.08 -130.82 REMARK 500 3 PHE A 75 -39.33 -133.44 REMARK 500 3 GLU A 89 -59.88 69.40 REMARK 500 4 ASN A 15 9.24 -68.33 REMARK 500 4 VAL A 21 59.81 -90.07 REMARK 500 4 CYS A 36 177.52 56.40 REMARK 500 4 PHE A 75 -3.79 -141.65 REMARK 500 4 GLU A 78 163.93 79.05 REMARK 500 5 LEU A 30 36.86 -83.29 REMARK 500 5 ASN A 73 -34.07 -150.57 REMARK 500 5 GLU A 88 51.48 -143.62 REMARK 500 6 LYS A 18 75.97 -113.58 REMARK 500 6 VAL A 52 63.12 -157.81 REMARK 500 6 VAL A 77 -23.29 71.73 REMARK 500 7 ASN A 15 2.29 -66.75 REMARK 500 7 ARG A 43 13.87 -69.53 REMARK 500 7 HIS A 51 -39.05 -141.44 REMARK 500 7 ASP A 80 -118.48 47.09 REMARK 500 8 LYS A 18 72.58 -118.26 REMARK 500 8 VAL A 21 38.94 -80.45 REMARK 500 8 VAL A 52 28.87 44.45 REMARK 500 8 MET A 74 32.07 -78.18 REMARK 500 8 ASP A 76 26.87 47.51 REMARK 500 9 HIS A 51 -48.38 -137.12 REMARK 500 9 PHE A 75 -44.88 -137.67 REMARK 500 11 LYS A 18 77.72 -110.46 REMARK 500 11 VAL A 52 -61.07 59.77 REMARK 500 11 GLN A 72 -66.21 -93.33 REMARK 500 11 TYR A 86 -158.95 -152.12 REMARK 500 12 ASN A 15 27.92 -144.42 REMARK 500 12 VAL A 52 28.51 44.81 REMARK 500 12 GLN A 72 6.58 -68.46 REMARK 500 12 VAL A 81 -6.08 51.71 REMARK 500 13 LYS A 18 69.60 -104.62 REMARK 500 13 GLU A 38 -48.11 176.07 REMARK 500 13 HIS A 51 -45.85 -148.26 REMARK 500 13 VAL A 52 -166.97 -126.97 REMARK 500 13 ALA A 83 -2.08 55.62 REMARK 500 14 SER A 35 -14.28 58.50 REMARK 500 14 VAL A 52 28.45 44.10 REMARK 500 15 CYS A 2 47.36 -78.32 REMARK 500 15 ASN A 15 2.04 -69.37 REMARK 500 15 LYS A 18 73.09 -115.82 REMARK 500 15 VAL A 21 43.08 -82.56 REMARK 500 15 CYS A 36 145.48 61.97 REMARK 500 16 ASN A 15 22.48 -74.09 REMARK 500 16 LYS A 18 78.37 -110.79 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 14 ARG A 26 0.10 SIDE CHAIN REMARK 500 20 ARG A 10 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2OT2 A 1 90 UNP P0AAM3 HYPC_ECOLI 1 90 SEQRES 1 A 90 MET CYS ILE GLY VAL PRO GLY GLN ILE ARG THR ILE ASP SEQRES 2 A 90 GLY ASN GLN ALA LYS VAL ASP VAL CYS GLY ILE GLN ARG SEQRES 3 A 90 ASP VAL ASP LEU THR LEU VAL GLY SER CYS ASP GLU ASN SEQRES 4 A 90 GLY GLN PRO ARG VAL GLY GLN TRP VAL LEU VAL HIS VAL SEQRES 5 A 90 GLY PHE ALA MET SER VAL ILE ASN GLU ALA GLU ALA ARG SEQRES 6 A 90 ASP THR LEU ASP ALA LEU GLN ASN MET PHE ASP VAL GLU SEQRES 7 A 90 PRO ASP VAL GLY ALA LEU LEU TYR GLY GLU GLU LYS HELIX 1 1 ASN A 60 VAL A 77 1 18 HELIX 2 2 PRO A 79 TYR A 86 1 8 SHEET 1 A 6 GLY A 4 ILE A 12 0 SHEET 2 A 6 GLN A 16 ASP A 20 -1 O ASP A 20 N GLN A 8 SHEET 3 A 6 GLN A 25 ASP A 29 -1 O ARG A 26 N VAL A 19 SHEET 4 A 6 PHE A 54 ILE A 59 1 O ALA A 55 N ASP A 29 SHEET 5 A 6 TRP A 47 HIS A 51 -1 N LEU A 49 O MET A 56 SHEET 6 A 6 GLY A 4 ILE A 12 -1 N GLY A 7 O VAL A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1