data_2OTY # _entry.id 2OTY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OTY pdb_00002oty 10.2210/pdb2oty/pdb RCSB RCSB041581 ? ? WWPDB D_1000041581 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 181L _pdbx_database_related.details 'The same protein complexed with benzene' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2OTY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-02-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Graves, A.P.' 1 'Shoichet, B.K.' 2 # _citation.id primary _citation.title 'Predicting absolute ligand binding free energies to a simple model site.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 371 _citation.page_first 1118 _citation.page_last 1134 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17599350 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.06.002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mobley, D.L.' 1 ? primary 'Graves, A.P.' 2 ? primary 'Chodera, J.D.' 3 ? primary 'McReynolds, A.C.' 4 ? primary 'Shoichet, B.K.' 5 ? primary 'Dill, K.A.' 6 ? # _cell.entry_id 2OTY _cell.length_a 60.210 _cell.length_b 60.210 _cell.length_c 97.031 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OTY _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Lysozyme 18359.023 1 3.2.1.17 ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 3 ? ? ? ? 3 non-polymer syn BETA-MERCAPTOETHANOL 78.133 1 ? ? ? ? 4 non-polymer syn 1,2-DICHLOROBENZENE 147.002 1 ? ? ? ? 5 water nat water 18.015 233 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Lysis protein, Muramidase, Endolysin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YK ; _entity_poly.pdbx_seq_one_letter_code_can ;MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YK ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ILE n 1 4 PHE n 1 5 GLU n 1 6 MET n 1 7 LEU n 1 8 ARG n 1 9 ILE n 1 10 ASP n 1 11 GLU n 1 12 GLY n 1 13 LEU n 1 14 ARG n 1 15 LEU n 1 16 LYS n 1 17 ILE n 1 18 TYR n 1 19 LYS n 1 20 ASP n 1 21 THR n 1 22 GLU n 1 23 GLY n 1 24 TYR n 1 25 TYR n 1 26 THR n 1 27 ILE n 1 28 GLY n 1 29 ILE n 1 30 GLY n 1 31 HIS n 1 32 LEU n 1 33 LEU n 1 34 THR n 1 35 LYS n 1 36 SER n 1 37 PRO n 1 38 SER n 1 39 LEU n 1 40 ASN n 1 41 ALA n 1 42 ALA n 1 43 LYS n 1 44 SER n 1 45 GLU n 1 46 LEU n 1 47 ASP n 1 48 LYS n 1 49 ALA n 1 50 ILE n 1 51 GLY n 1 52 ARG n 1 53 ASN n 1 54 THR n 1 55 ASN n 1 56 GLY n 1 57 VAL n 1 58 ILE n 1 59 THR n 1 60 LYS n 1 61 ASP n 1 62 GLU n 1 63 ALA n 1 64 GLU n 1 65 LYS n 1 66 LEU n 1 67 PHE n 1 68 ASN n 1 69 GLN n 1 70 ASP n 1 71 VAL n 1 72 ASP n 1 73 ALA n 1 74 ALA n 1 75 VAL n 1 76 ARG n 1 77 GLY n 1 78 ILE n 1 79 LEU n 1 80 ARG n 1 81 ASN n 1 82 ALA n 1 83 LYS n 1 84 LEU n 1 85 LYS n 1 86 PRO n 1 87 VAL n 1 88 TYR n 1 89 ASP n 1 90 SER n 1 91 LEU n 1 92 ASP n 1 93 ALA n 1 94 VAL n 1 95 ARG n 1 96 ARG n 1 97 ALA n 1 98 ALA n 1 99 ALA n 1 100 ILE n 1 101 ASN n 1 102 MET n 1 103 VAL n 1 104 PHE n 1 105 GLN n 1 106 MET n 1 107 GLY n 1 108 GLU n 1 109 THR n 1 110 GLY n 1 111 VAL n 1 112 ALA n 1 113 GLY n 1 114 PHE n 1 115 THR n 1 116 ASN n 1 117 SER n 1 118 LEU n 1 119 ARG n 1 120 MET n 1 121 LEU n 1 122 GLN n 1 123 GLN n 1 124 LYS n 1 125 ARG n 1 126 TRP n 1 127 ASP n 1 128 GLU n 1 129 ALA n 1 130 ALA n 1 131 VAL n 1 132 ASN n 1 133 LEU n 1 134 ALA n 1 135 LYS n 1 136 SER n 1 137 ARG n 1 138 TRP n 1 139 TYR n 1 140 ASN n 1 141 GLN n 1 142 THR n 1 143 PRO n 1 144 ASN n 1 145 ARG n 1 146 ALA n 1 147 LYS n 1 148 ARG n 1 149 VAL n 1 150 ILE n 1 151 THR n 1 152 THR n 1 153 PHE n 1 154 ARG n 1 155 THR n 1 156 GLY n 1 157 THR n 1 158 TRP n 1 159 ASP n 1 160 ALA n 1 161 TYR n 1 162 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus 'T4-like viruses' _entity_src_gen.pdbx_gene_src_gene E _entity_src_gen.gene_src_species 'Enterobacteria phage T4 sensu lato' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterobacteria phage T4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10665 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name M13 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYS_BPT4 _struct_ref.pdbx_db_accession P00720 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2OTY _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00720 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 162 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OTY THR X 54 ? UNP P00720 CYS 54 'engineered mutation' 54 1 1 2OTY ALA X 97 ? UNP P00720 CYS 97 'engineered mutation' 97 2 1 2OTY ALA X 99 ? UNP P00720 LEU 99 'engineered mutation' 99 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YAN non-polymer . 1,2-DICHLOROBENZENE ? 'C6 H4 Cl2' 147.002 # _exptl.crystals_number 1 _exptl.entry_id 2OTY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.77 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.1 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;2.2M sodium-potassium phosphate, 0.05M beta-mercaptoethanol, 0.05M 2-hydroxyethyldisulfide, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-06-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2OTY _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 50.000 _reflns.number_obs 22986 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_netI_over_sigmaI 9.800 _reflns.pdbx_chi_squared 1.006 _reflns.pdbx_redundancy 5.800 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 22986 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.645 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.972 _reflns_shell.pdbx_redundancy 5.30 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2263 _reflns_shell.percent_possible_all 99.90 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OTY _refine.ls_d_res_high 1.830 _refine.ls_d_res_low 52.130 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.810 _refine.ls_number_reflns_obs 18469 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.198 _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.235 _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 959 _refine.B_iso_mean 14.790 _refine.aniso_B[1][1] 0.140 _refine.aniso_B[2][2] 0.140 _refine.aniso_B[3][3] -0.220 _refine.aniso_B[1][2] 0.070 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.pdbx_overall_ESU_R 0.136 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.overall_SU_ML 0.089 _refine.overall_SU_B 2.875 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 22951 _refine.ls_R_factor_all 0.206 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 181L _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1295 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 237 _refine_hist.number_atoms_total 1567 _refine_hist.d_res_high 1.830 _refine_hist.d_res_low 52.130 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1350 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1822 1.004 1.974 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 167 4.822 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 61 31.263 23.279 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 243 11.112 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 11.564 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 200 0.065 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1000 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 708 0.182 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 933 0.297 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 186 0.114 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 45 0.161 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 23 0.100 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 846 0.436 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1302 0.672 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 596 1.285 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 516 1.831 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.830 _refine_ls_shell.d_res_low 1.877 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1259 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.27 _refine_ls_shell.R_factor_R_free 0.347 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1317 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OTY _struct.title '1,2-dichlorobenzene in complex with T4 Lysozyme L99A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OTY _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, PROTEIN-LIGAND COMPLEX, MODEL SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? GLY A 12 ? ASN X 2 GLY X 12 1 ? 11 HELX_P HELX_P2 2 SER A 38 ? GLY A 51 ? SER X 38 GLY X 51 1 ? 14 HELX_P HELX_P3 3 THR A 59 ? ASN A 81 ? THR X 59 ASN X 81 1 ? 23 HELX_P HELX_P4 4 LEU A 84 ? LEU A 91 ? LEU X 84 LEU X 91 1 ? 8 HELX_P HELX_P5 5 ASP A 92 ? ALA A 112 ? ASP X 92 ALA X 112 1 ? 21 HELX_P HELX_P6 6 PHE A 114 ? GLN A 123 ? PHE X 114 GLN X 123 1 ? 10 HELX_P HELX_P7 7 ARG A 125 ? ALA A 134 ? ARG X 125 ALA X 134 1 ? 10 HELX_P HELX_P8 8 SER A 136 ? THR A 142 ? SER X 136 THR X 142 1 ? 7 HELX_P HELX_P9 9 THR A 142 ? GLY A 156 ? THR X 142 GLY X 156 1 ? 15 HELX_P HELX_P10 10 TRP A 158 ? LYS A 162 ? TRP X 158 LYS X 162 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 14 ? LYS A 19 ? ARG X 14 LYS X 19 A 2 TYR A 25 ? GLY A 28 ? TYR X 25 GLY X 28 A 3 HIS A 31 ? LEU A 32 ? HIS X 31 LEU X 32 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 18 ? N TYR X 18 O THR A 26 ? O THR X 26 A 2 3 N ILE A 27 ? N ILE X 27 O HIS A 31 ? O HIS X 31 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X PO4 301 ? 9 'BINDING SITE FOR RESIDUE PO4 X 301' AC2 Software X PO4 302 ? 5 'BINDING SITE FOR RESIDUE PO4 X 302' AC3 Software X PO4 303 ? 5 'BINDING SITE FOR RESIDUE PO4 X 303' AC4 Software X BME 304 ? 5 'BINDING SITE FOR RESIDUE BME X 304' AC5 Software X YAN 305 ? 12 'BINDING SITE FOR RESIDUE YAN X 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ARG A 14 ? ARG X 14 . ? 1_555 ? 2 AC1 9 LYS A 19 ? LYS X 19 . ? 1_555 ? 3 AC1 9 ARG A 125 ? ARG X 125 . ? 4_455 ? 4 AC1 9 TRP A 126 ? TRP X 126 . ? 4_455 ? 5 AC1 9 ASP A 127 ? ASP X 127 . ? 4_455 ? 6 AC1 9 GLU A 128 ? GLU X 128 . ? 4_455 ? 7 AC1 9 HOH G . ? HOH X 334 . ? 4_455 ? 8 AC1 9 HOH G . ? HOH X 463 . ? 1_555 ? 9 AC1 9 HOH G . ? HOH X 513 . ? 1_555 ? 10 AC2 5 ASN A 144 ? ASN X 144 . ? 1_555 ? 11 AC2 5 ARG A 148 ? ARG X 148 . ? 1_555 ? 12 AC2 5 HOH G . ? HOH X 332 . ? 4_455 ? 13 AC2 5 HOH G . ? HOH X 506 . ? 1_555 ? 14 AC2 5 HOH G . ? HOH X 519 . ? 1_555 ? 15 AC3 5 ARG A 76 ? ARG X 76 . ? 1_555 ? 16 AC3 5 ARG A 80 ? ARG X 80 . ? 1_555 ? 17 AC3 5 LYS A 85 ? LYS X 85 . ? 6_554 ? 18 AC3 5 HOH G . ? HOH X 471 . ? 1_555 ? 19 AC3 5 HOH G . ? HOH X 534 . ? 1_555 ? 20 AC4 5 ASP A 72 ? ASP X 72 . ? 1_555 ? 21 AC4 5 VAL A 75 ? VAL X 75 . ? 6_554 ? 22 AC4 5 VAL A 75 ? VAL X 75 . ? 1_555 ? 23 AC4 5 LEU A 79 ? LEU X 79 . ? 1_555 ? 24 AC4 5 TYR A 88 ? TYR X 88 . ? 6_554 ? 25 AC5 12 ILE A 78 ? ILE X 78 . ? 1_555 ? 26 AC5 12 LEU A 84 ? LEU X 84 . ? 1_555 ? 27 AC5 12 VAL A 87 ? VAL X 87 . ? 1_555 ? 28 AC5 12 TYR A 88 ? TYR X 88 . ? 1_555 ? 29 AC5 12 LEU A 91 ? LEU X 91 . ? 1_555 ? 30 AC5 12 ALA A 99 ? ALA X 99 . ? 1_555 ? 31 AC5 12 MET A 102 ? MET X 102 . ? 1_555 ? 32 AC5 12 VAL A 103 ? VAL X 103 . ? 1_555 ? 33 AC5 12 VAL A 111 ? VAL X 111 . ? 1_555 ? 34 AC5 12 LEU A 118 ? LEU X 118 . ? 1_555 ? 35 AC5 12 LEU A 121 ? LEU X 121 . ? 1_555 ? 36 AC5 12 PHE A 153 ? PHE X 153 . ? 1_555 ? # _atom_sites.entry_id 2OTY _atom_sites.fract_transf_matrix[1][1] 0.016609 _atom_sites.fract_transf_matrix[1][2] 0.009589 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019178 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010306 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET X . n A 1 2 ASN 2 2 2 ASN ASN X . n A 1 3 ILE 3 3 3 ILE ILE X . n A 1 4 PHE 4 4 4 PHE PHE X . n A 1 5 GLU 5 5 5 GLU GLU X . n A 1 6 MET 6 6 6 MET MET X . n A 1 7 LEU 7 7 7 LEU LEU X . n A 1 8 ARG 8 8 8 ARG ARG X . n A 1 9 ILE 9 9 9 ILE ILE X . n A 1 10 ASP 10 10 10 ASP ASP X . n A 1 11 GLU 11 11 11 GLU GLU X . n A 1 12 GLY 12 12 12 GLY GLY X . n A 1 13 LEU 13 13 13 LEU LEU X . n A 1 14 ARG 14 14 14 ARG ARG X . n A 1 15 LEU 15 15 15 LEU LEU X . n A 1 16 LYS 16 16 16 LYS LYS X . n A 1 17 ILE 17 17 17 ILE ILE X . n A 1 18 TYR 18 18 18 TYR TYR X . n A 1 19 LYS 19 19 19 LYS LYS X . n A 1 20 ASP 20 20 20 ASP ASP X . n A 1 21 THR 21 21 21 THR THR X . n A 1 22 GLU 22 22 22 GLU GLU X . n A 1 23 GLY 23 23 23 GLY GLY X . n A 1 24 TYR 24 24 24 TYR TYR X . n A 1 25 TYR 25 25 25 TYR TYR X . n A 1 26 THR 26 26 26 THR THR X . n A 1 27 ILE 27 27 27 ILE ILE X . n A 1 28 GLY 28 28 28 GLY GLY X . n A 1 29 ILE 29 29 29 ILE ILE X . n A 1 30 GLY 30 30 30 GLY GLY X . n A 1 31 HIS 31 31 31 HIS HIS X . n A 1 32 LEU 32 32 32 LEU LEU X . n A 1 33 LEU 33 33 33 LEU LEU X . n A 1 34 THR 34 34 34 THR THR X . n A 1 35 LYS 35 35 35 LYS LYS X . n A 1 36 SER 36 36 36 SER SER X . n A 1 37 PRO 37 37 37 PRO PRO X . n A 1 38 SER 38 38 38 SER SER X . n A 1 39 LEU 39 39 39 LEU LEU X . n A 1 40 ASN 40 40 40 ASN ASN X . n A 1 41 ALA 41 41 41 ALA ALA X . n A 1 42 ALA 42 42 42 ALA ALA X . n A 1 43 LYS 43 43 43 LYS LYS X . n A 1 44 SER 44 44 44 SER SER X . n A 1 45 GLU 45 45 45 GLU GLU X . n A 1 46 LEU 46 46 46 LEU LEU X . n A 1 47 ASP 47 47 47 ASP ASP X . n A 1 48 LYS 48 48 48 LYS LYS X . n A 1 49 ALA 49 49 49 ALA ALA X . n A 1 50 ILE 50 50 50 ILE ILE X . n A 1 51 GLY 51 51 51 GLY GLY X . n A 1 52 ARG 52 52 52 ARG ARG X . n A 1 53 ASN 53 53 53 ASN ASN X . n A 1 54 THR 54 54 54 THR THR X . n A 1 55 ASN 55 55 55 ASN ASN X . n A 1 56 GLY 56 56 56 GLY GLY X . n A 1 57 VAL 57 57 57 VAL VAL X . n A 1 58 ILE 58 58 58 ILE ILE X . n A 1 59 THR 59 59 59 THR THR X . n A 1 60 LYS 60 60 60 LYS LYS X . n A 1 61 ASP 61 61 61 ASP ASP X . n A 1 62 GLU 62 62 62 GLU GLU X . n A 1 63 ALA 63 63 63 ALA ALA X . n A 1 64 GLU 64 64 64 GLU GLU X . n A 1 65 LYS 65 65 65 LYS LYS X . n A 1 66 LEU 66 66 66 LEU LEU X . n A 1 67 PHE 67 67 67 PHE PHE X . n A 1 68 ASN 68 68 68 ASN ASN X . n A 1 69 GLN 69 69 69 GLN GLN X . n A 1 70 ASP 70 70 70 ASP ASP X . n A 1 71 VAL 71 71 71 VAL VAL X . n A 1 72 ASP 72 72 72 ASP ASP X . n A 1 73 ALA 73 73 73 ALA ALA X . n A 1 74 ALA 74 74 74 ALA ALA X . n A 1 75 VAL 75 75 75 VAL VAL X . n A 1 76 ARG 76 76 76 ARG ARG X . n A 1 77 GLY 77 77 77 GLY GLY X . n A 1 78 ILE 78 78 78 ILE ILE X . n A 1 79 LEU 79 79 79 LEU LEU X . n A 1 80 ARG 80 80 80 ARG ARG X . n A 1 81 ASN 81 81 81 ASN ASN X . n A 1 82 ALA 82 82 82 ALA ALA X . n A 1 83 LYS 83 83 83 LYS LYS X . n A 1 84 LEU 84 84 84 LEU LEU X . n A 1 85 LYS 85 85 85 LYS LYS X . n A 1 86 PRO 86 86 86 PRO PRO X . n A 1 87 VAL 87 87 87 VAL VAL X . n A 1 88 TYR 88 88 88 TYR TYR X . n A 1 89 ASP 89 89 89 ASP ASP X . n A 1 90 SER 90 90 90 SER SER X . n A 1 91 LEU 91 91 91 LEU LEU X . n A 1 92 ASP 92 92 92 ASP ASP X . n A 1 93 ALA 93 93 93 ALA ALA X . n A 1 94 VAL 94 94 94 VAL VAL X . n A 1 95 ARG 95 95 95 ARG ARG X . n A 1 96 ARG 96 96 96 ARG ARG X . n A 1 97 ALA 97 97 97 ALA ALA X . n A 1 98 ALA 98 98 98 ALA ALA X . n A 1 99 ALA 99 99 99 ALA ALA X . n A 1 100 ILE 100 100 100 ILE ILE X . n A 1 101 ASN 101 101 101 ASN ASN X . n A 1 102 MET 102 102 102 MET MET X . n A 1 103 VAL 103 103 103 VAL VAL X . n A 1 104 PHE 104 104 104 PHE PHE X . n A 1 105 GLN 105 105 105 GLN GLN X . n A 1 106 MET 106 106 106 MET MET X . n A 1 107 GLY 107 107 107 GLY GLY X . n A 1 108 GLU 108 108 108 GLU GLU X . n A 1 109 THR 109 109 109 THR THR X . n A 1 110 GLY 110 110 110 GLY GLY X . n A 1 111 VAL 111 111 111 VAL VAL X . n A 1 112 ALA 112 112 112 ALA ALA X . n A 1 113 GLY 113 113 113 GLY GLY X . n A 1 114 PHE 114 114 114 PHE PHE X . n A 1 115 THR 115 115 115 THR THR X . n A 1 116 ASN 116 116 116 ASN ASN X . n A 1 117 SER 117 117 117 SER SER X . n A 1 118 LEU 118 118 118 LEU LEU X . n A 1 119 ARG 119 119 119 ARG ARG X . n A 1 120 MET 120 120 120 MET MET X . n A 1 121 LEU 121 121 121 LEU LEU X . n A 1 122 GLN 122 122 122 GLN GLN X . n A 1 123 GLN 123 123 123 GLN GLN X . n A 1 124 LYS 124 124 124 LYS LYS X . n A 1 125 ARG 125 125 125 ARG ARG X . n A 1 126 TRP 126 126 126 TRP TRP X . n A 1 127 ASP 127 127 127 ASP ASP X . n A 1 128 GLU 128 128 128 GLU GLU X . n A 1 129 ALA 129 129 129 ALA ALA X . n A 1 130 ALA 130 130 130 ALA ALA X . n A 1 131 VAL 131 131 131 VAL VAL X . n A 1 132 ASN 132 132 132 ASN ASN X . n A 1 133 LEU 133 133 133 LEU LEU X . n A 1 134 ALA 134 134 134 ALA ALA X . n A 1 135 LYS 135 135 135 LYS LYS X . n A 1 136 SER 136 136 136 SER SER X . n A 1 137 ARG 137 137 137 ARG ARG X . n A 1 138 TRP 138 138 138 TRP TRP X . n A 1 139 TYR 139 139 139 TYR TYR X . n A 1 140 ASN 140 140 140 ASN ASN X . n A 1 141 GLN 141 141 141 GLN GLN X . n A 1 142 THR 142 142 142 THR THR X . n A 1 143 PRO 143 143 143 PRO PRO X . n A 1 144 ASN 144 144 144 ASN ASN X . n A 1 145 ARG 145 145 145 ARG ARG X . n A 1 146 ALA 146 146 146 ALA ALA X . n A 1 147 LYS 147 147 147 LYS LYS X . n A 1 148 ARG 148 148 148 ARG ARG X . n A 1 149 VAL 149 149 149 VAL VAL X . n A 1 150 ILE 150 150 150 ILE ILE X . n A 1 151 THR 151 151 151 THR THR X . n A 1 152 THR 152 152 152 THR THR X . n A 1 153 PHE 153 153 153 PHE PHE X . n A 1 154 ARG 154 154 154 ARG ARG X . n A 1 155 THR 155 155 155 THR THR X . n A 1 156 GLY 156 156 156 GLY GLY X . n A 1 157 THR 157 157 157 THR THR X . n A 1 158 TRP 158 158 158 TRP TRP X . n A 1 159 ASP 159 159 159 ASP ASP X . n A 1 160 ALA 160 160 160 ALA ALA X . n A 1 161 TYR 161 161 161 TYR TYR X . n A 1 162 LYS 162 162 162 LYS LYS X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 301 301 PO4 PO4 X . C 2 PO4 1 302 302 PO4 PO4 X . D 2 PO4 1 303 303 PO4 PO4 X . E 3 BME 1 304 304 BME BME X . F 4 YAN 1 305 305 YAN YAN X . G 5 HOH 1 306 1 HOH HOH X . G 5 HOH 2 307 2 HOH HOH X . G 5 HOH 3 308 3 HOH HOH X . G 5 HOH 4 309 4 HOH HOH X . G 5 HOH 5 310 5 HOH HOH X . G 5 HOH 6 311 6 HOH HOH X . G 5 HOH 7 312 7 HOH HOH X . G 5 HOH 8 313 8 HOH HOH X . G 5 HOH 9 314 9 HOH HOH X . G 5 HOH 10 315 10 HOH HOH X . G 5 HOH 11 316 11 HOH HOH X . G 5 HOH 12 317 12 HOH HOH X . G 5 HOH 13 318 13 HOH HOH X . G 5 HOH 14 319 14 HOH HOH X . G 5 HOH 15 320 15 HOH HOH X . G 5 HOH 16 321 16 HOH HOH X . G 5 HOH 17 322 17 HOH HOH X . G 5 HOH 18 323 18 HOH HOH X . G 5 HOH 19 324 19 HOH HOH X . G 5 HOH 20 325 20 HOH HOH X . G 5 HOH 21 326 21 HOH HOH X . G 5 HOH 22 327 22 HOH HOH X . G 5 HOH 23 328 23 HOH HOH X . G 5 HOH 24 329 24 HOH HOH X . G 5 HOH 25 330 25 HOH HOH X . G 5 HOH 26 331 26 HOH HOH X . G 5 HOH 27 332 27 HOH HOH X . G 5 HOH 28 333 28 HOH HOH X . G 5 HOH 29 334 29 HOH HOH X . G 5 HOH 30 335 30 HOH HOH X . G 5 HOH 31 336 31 HOH HOH X . G 5 HOH 32 337 32 HOH HOH X . G 5 HOH 33 338 33 HOH HOH X . G 5 HOH 34 339 34 HOH HOH X . G 5 HOH 35 340 35 HOH HOH X . G 5 HOH 36 341 36 HOH HOH X . G 5 HOH 37 342 37 HOH HOH X . G 5 HOH 38 343 38 HOH HOH X . G 5 HOH 39 344 39 HOH HOH X . G 5 HOH 40 345 40 HOH HOH X . G 5 HOH 41 346 41 HOH HOH X . G 5 HOH 42 347 42 HOH HOH X . G 5 HOH 43 348 43 HOH HOH X . G 5 HOH 44 349 44 HOH HOH X . G 5 HOH 45 350 45 HOH HOH X . G 5 HOH 46 351 46 HOH HOH X . G 5 HOH 47 352 47 HOH HOH X . G 5 HOH 48 353 48 HOH HOH X . G 5 HOH 49 354 49 HOH HOH X . G 5 HOH 50 355 50 HOH HOH X . G 5 HOH 51 356 51 HOH HOH X . G 5 HOH 52 357 52 HOH HOH X . G 5 HOH 53 358 53 HOH HOH X . G 5 HOH 54 359 54 HOH HOH X . G 5 HOH 55 360 55 HOH HOH X . G 5 HOH 56 361 56 HOH HOH X . G 5 HOH 57 362 57 HOH HOH X . G 5 HOH 58 363 58 HOH HOH X . G 5 HOH 59 364 59 HOH HOH X . G 5 HOH 60 365 60 HOH HOH X . G 5 HOH 61 366 61 HOH HOH X . G 5 HOH 62 367 62 HOH HOH X . G 5 HOH 63 368 63 HOH HOH X . G 5 HOH 64 369 64 HOH HOH X . G 5 HOH 65 370 65 HOH HOH X . G 5 HOH 66 371 66 HOH HOH X . G 5 HOH 67 372 67 HOH HOH X . G 5 HOH 68 373 68 HOH HOH X . G 5 HOH 69 374 69 HOH HOH X . G 5 HOH 70 375 70 HOH HOH X . G 5 HOH 71 376 71 HOH HOH X . G 5 HOH 72 377 72 HOH HOH X . G 5 HOH 73 378 73 HOH HOH X . G 5 HOH 74 379 74 HOH HOH X . G 5 HOH 75 380 75 HOH HOH X . G 5 HOH 76 381 76 HOH HOH X . G 5 HOH 77 382 77 HOH HOH X . G 5 HOH 78 383 78 HOH HOH X . G 5 HOH 79 384 79 HOH HOH X . G 5 HOH 80 385 80 HOH HOH X . G 5 HOH 81 386 81 HOH HOH X . G 5 HOH 82 387 82 HOH HOH X . G 5 HOH 83 388 83 HOH HOH X . G 5 HOH 84 389 84 HOH HOH X . G 5 HOH 85 390 85 HOH HOH X . G 5 HOH 86 391 86 HOH HOH X . G 5 HOH 87 392 87 HOH HOH X . G 5 HOH 88 393 88 HOH HOH X . G 5 HOH 89 394 89 HOH HOH X . G 5 HOH 90 395 90 HOH HOH X . G 5 HOH 91 396 91 HOH HOH X . G 5 HOH 92 397 92 HOH HOH X . G 5 HOH 93 398 93 HOH HOH X . G 5 HOH 94 399 94 HOH HOH X . G 5 HOH 95 400 95 HOH HOH X . G 5 HOH 96 401 96 HOH HOH X . G 5 HOH 97 402 97 HOH HOH X . G 5 HOH 98 403 98 HOH HOH X . G 5 HOH 99 404 99 HOH HOH X . G 5 HOH 100 405 100 HOH HOH X . G 5 HOH 101 406 101 HOH HOH X . G 5 HOH 102 407 102 HOH HOH X . G 5 HOH 103 408 103 HOH HOH X . G 5 HOH 104 409 104 HOH HOH X . G 5 HOH 105 410 105 HOH HOH X . G 5 HOH 106 411 106 HOH HOH X . G 5 HOH 107 412 107 HOH HOH X . G 5 HOH 108 413 108 HOH HOH X . G 5 HOH 109 414 109 HOH HOH X . G 5 HOH 110 415 110 HOH HOH X . G 5 HOH 111 416 111 HOH HOH X . G 5 HOH 112 417 112 HOH HOH X . G 5 HOH 113 418 113 HOH HOH X . G 5 HOH 114 419 114 HOH HOH X . G 5 HOH 115 420 115 HOH HOH X . G 5 HOH 116 421 116 HOH HOH X . G 5 HOH 117 422 117 HOH HOH X . G 5 HOH 118 423 118 HOH HOH X . G 5 HOH 119 424 119 HOH HOH X . G 5 HOH 120 425 120 HOH HOH X . G 5 HOH 121 426 121 HOH HOH X . G 5 HOH 122 427 122 HOH HOH X . G 5 HOH 123 428 123 HOH HOH X . G 5 HOH 124 429 124 HOH HOH X . G 5 HOH 125 430 125 HOH HOH X . G 5 HOH 126 431 126 HOH HOH X . G 5 HOH 127 432 127 HOH HOH X . G 5 HOH 128 433 128 HOH HOH X . G 5 HOH 129 434 129 HOH HOH X . G 5 HOH 130 435 130 HOH HOH X . G 5 HOH 131 436 131 HOH HOH X . G 5 HOH 132 437 132 HOH HOH X . G 5 HOH 133 438 133 HOH HOH X . G 5 HOH 134 439 134 HOH HOH X . G 5 HOH 135 440 135 HOH HOH X . G 5 HOH 136 441 136 HOH HOH X . G 5 HOH 137 442 137 HOH HOH X . G 5 HOH 138 443 138 HOH HOH X . G 5 HOH 139 444 139 HOH HOH X . G 5 HOH 140 445 141 HOH HOH X . G 5 HOH 141 446 142 HOH HOH X . G 5 HOH 142 447 143 HOH HOH X . G 5 HOH 143 448 144 HOH HOH X . G 5 HOH 144 449 145 HOH HOH X . G 5 HOH 145 450 146 HOH HOH X . G 5 HOH 146 451 147 HOH HOH X . G 5 HOH 147 452 148 HOH HOH X . G 5 HOH 148 453 149 HOH HOH X . G 5 HOH 149 454 150 HOH HOH X . G 5 HOH 150 455 151 HOH HOH X . G 5 HOH 151 456 152 HOH HOH X . G 5 HOH 152 457 153 HOH HOH X . G 5 HOH 153 458 154 HOH HOH X . G 5 HOH 154 459 155 HOH HOH X . G 5 HOH 155 460 156 HOH HOH X . G 5 HOH 156 461 157 HOH HOH X . G 5 HOH 157 462 158 HOH HOH X . G 5 HOH 158 463 159 HOH HOH X . G 5 HOH 159 464 161 HOH HOH X . G 5 HOH 160 465 162 HOH HOH X . G 5 HOH 161 466 163 HOH HOH X . G 5 HOH 162 467 164 HOH HOH X . G 5 HOH 163 468 165 HOH HOH X . G 5 HOH 164 469 166 HOH HOH X . G 5 HOH 165 470 167 HOH HOH X . G 5 HOH 166 471 169 HOH HOH X . G 5 HOH 167 472 170 HOH HOH X . G 5 HOH 168 473 172 HOH HOH X . G 5 HOH 169 474 173 HOH HOH X . G 5 HOH 170 475 174 HOH HOH X . G 5 HOH 171 476 175 HOH HOH X . G 5 HOH 172 477 176 HOH HOH X . G 5 HOH 173 478 177 HOH HOH X . G 5 HOH 174 479 178 HOH HOH X . G 5 HOH 175 480 179 HOH HOH X . G 5 HOH 176 481 180 HOH HOH X . G 5 HOH 177 482 181 HOH HOH X . G 5 HOH 178 483 182 HOH HOH X . G 5 HOH 179 484 183 HOH HOH X . G 5 HOH 180 485 184 HOH HOH X . G 5 HOH 181 486 187 HOH HOH X . G 5 HOH 182 487 188 HOH HOH X . G 5 HOH 183 488 189 HOH HOH X . G 5 HOH 184 489 190 HOH HOH X . G 5 HOH 185 490 191 HOH HOH X . G 5 HOH 186 491 194 HOH HOH X . G 5 HOH 187 492 195 HOH HOH X . G 5 HOH 188 493 196 HOH HOH X . G 5 HOH 189 494 198 HOH HOH X . G 5 HOH 190 495 199 HOH HOH X . G 5 HOH 191 496 200 HOH HOH X . G 5 HOH 192 497 201 HOH HOH X . G 5 HOH 193 498 202 HOH HOH X . G 5 HOH 194 499 203 HOH HOH X . G 5 HOH 195 500 204 HOH HOH X . G 5 HOH 196 501 205 HOH HOH X . G 5 HOH 197 502 206 HOH HOH X . G 5 HOH 198 503 207 HOH HOH X . G 5 HOH 199 504 208 HOH HOH X . G 5 HOH 200 505 209 HOH HOH X . G 5 HOH 201 506 210 HOH HOH X . G 5 HOH 202 507 211 HOH HOH X . G 5 HOH 203 508 212 HOH HOH X . G 5 HOH 204 509 213 HOH HOH X . G 5 HOH 205 510 214 HOH HOH X . G 5 HOH 206 511 215 HOH HOH X . G 5 HOH 207 512 216 HOH HOH X . G 5 HOH 208 513 217 HOH HOH X . G 5 HOH 209 514 218 HOH HOH X . G 5 HOH 210 515 219 HOH HOH X . G 5 HOH 211 516 220 HOH HOH X . G 5 HOH 212 517 221 HOH HOH X . G 5 HOH 213 518 222 HOH HOH X . G 5 HOH 214 519 223 HOH HOH X . G 5 HOH 215 520 224 HOH HOH X . G 5 HOH 216 521 225 HOH HOH X . G 5 HOH 217 522 226 HOH HOH X . G 5 HOH 218 523 227 HOH HOH X . G 5 HOH 219 524 228 HOH HOH X . G 5 HOH 220 525 229 HOH HOH X . G 5 HOH 221 526 230 HOH HOH X . G 5 HOH 222 527 231 HOH HOH X . G 5 HOH 223 528 232 HOH HOH X . G 5 HOH 224 529 233 HOH HOH X . G 5 HOH 225 530 234 HOH HOH X . G 5 HOH 226 531 235 HOH HOH X . G 5 HOH 227 532 236 HOH HOH X . G 5 HOH 228 533 237 HOH HOH X . G 5 HOH 229 534 238 HOH HOH X . G 5 HOH 230 535 239 HOH HOH X . G 5 HOH 231 536 240 HOH HOH X . G 5 HOH 232 537 241 HOH HOH X . G 5 HOH 233 538 242 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-18 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_ref_seq_dif 4 4 'Structure model' struct_site 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' 10 4 'Structure model' '_database_2.pdbx_DOI' 11 4 'Structure model' '_database_2.pdbx_database_accession' 12 4 'Structure model' '_struct_ref_seq_dif.details' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 REFMAC 5.2.0019 ? ? ? ? phasing ? ? ? 7 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id X _pdbx_validate_torsion.auth_seq_id 29 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -103.34 _pdbx_validate_torsion.psi 74.83 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X LYS 16 ? CE ? A LYS 16 CE 2 1 Y 1 X LYS 16 ? NZ ? A LYS 16 NZ 3 1 Y 1 X ASN 55 ? CB ? A ASN 55 CB 4 1 Y 1 X ASN 55 ? CG ? A ASN 55 CG 5 1 Y 1 X ASN 55 ? OD1 ? A ASN 55 OD1 6 1 Y 1 X ASN 55 ? ND2 ? A ASN 55 ND2 7 1 Y 1 X LYS 60 ? NZ ? A LYS 60 NZ 8 1 Y 1 X LYS 83 ? CG ? A LYS 83 CG 9 1 Y 1 X LYS 83 ? CD ? A LYS 83 CD 10 1 Y 1 X LYS 83 ? CE ? A LYS 83 CE 11 1 Y 1 X LYS 83 ? NZ ? A LYS 83 NZ 12 1 Y 1 X LYS 135 ? CE ? A LYS 135 CE 13 1 Y 1 X LYS 135 ? NZ ? A LYS 135 NZ 14 1 Y 1 X LYS 147 ? NZ ? A LYS 147 NZ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BME C1 C N N 74 BME C2 C N N 75 BME O1 O N N 76 BME S2 S N N 77 BME H11 H N N 78 BME H12 H N N 79 BME H21 H N N 80 BME H22 H N N 81 BME HO1 H N N 82 BME HS2 H N N 83 CYS N N N N 84 CYS CA C N R 85 CYS C C N N 86 CYS O O N N 87 CYS CB C N N 88 CYS SG S N N 89 CYS OXT O N N 90 CYS H H N N 91 CYS H2 H N N 92 CYS HA H N N 93 CYS HB2 H N N 94 CYS HB3 H N N 95 CYS HG H N N 96 CYS HXT H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PO4 P P N N 283 PO4 O1 O N N 284 PO4 O2 O N N 285 PO4 O3 O N N 286 PO4 O4 O N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 SER N N N N 305 SER CA C N S 306 SER C C N N 307 SER O O N N 308 SER CB C N N 309 SER OG O N N 310 SER OXT O N N 311 SER H H N N 312 SER H2 H N N 313 SER HA H N N 314 SER HB2 H N N 315 SER HB3 H N N 316 SER HG H N N 317 SER HXT H N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TRP N N N N 336 TRP CA C N S 337 TRP C C N N 338 TRP O O N N 339 TRP CB C N N 340 TRP CG C Y N 341 TRP CD1 C Y N 342 TRP CD2 C Y N 343 TRP NE1 N Y N 344 TRP CE2 C Y N 345 TRP CE3 C Y N 346 TRP CZ2 C Y N 347 TRP CZ3 C Y N 348 TRP CH2 C Y N 349 TRP OXT O N N 350 TRP H H N N 351 TRP H2 H N N 352 TRP HA H N N 353 TRP HB2 H N N 354 TRP HB3 H N N 355 TRP HD1 H N N 356 TRP HE1 H N N 357 TRP HE3 H N N 358 TRP HZ2 H N N 359 TRP HZ3 H N N 360 TRP HH2 H N N 361 TRP HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 YAN CL1 CL N N 406 YAN CAG C Y N 407 YAN CAE C Y N 408 YAN CAC C Y N 409 YAN CAD C Y N 410 YAN CAF C Y N 411 YAN CAH C Y N 412 YAN CL2 CL N N 413 YAN HAE H N N 414 YAN HAC H N N 415 YAN HAD H N N 416 YAN HAF H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BME C1 C2 sing N N 70 BME C1 O1 sing N N 71 BME C1 H11 sing N N 72 BME C1 H12 sing N N 73 BME C2 S2 sing N N 74 BME C2 H21 sing N N 75 BME C2 H22 sing N N 76 BME O1 HO1 sing N N 77 BME S2 HS2 sing N N 78 CYS N CA sing N N 79 CYS N H sing N N 80 CYS N H2 sing N N 81 CYS CA C sing N N 82 CYS CA CB sing N N 83 CYS CA HA sing N N 84 CYS C O doub N N 85 CYS C OXT sing N N 86 CYS CB SG sing N N 87 CYS CB HB2 sing N N 88 CYS CB HB3 sing N N 89 CYS SG HG sing N N 90 CYS OXT HXT sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PO4 P O1 doub N N 269 PO4 P O2 sing N N 270 PO4 P O3 sing N N 271 PO4 P O4 sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 YAN CL1 CAG sing N N 389 YAN CAG CAE doub Y N 390 YAN CAG CAH sing Y N 391 YAN CAE CAC sing Y N 392 YAN CAE HAE sing N N 393 YAN CAC CAD doub Y N 394 YAN CAC HAC sing N N 395 YAN CAD CAF sing Y N 396 YAN CAD HAD sing N N 397 YAN CAF CAH doub Y N 398 YAN CAF HAF sing N N 399 YAN CAH CL2 sing N N 400 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 BETA-MERCAPTOETHANOL BME 4 1,2-DICHLOROBENZENE YAN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 181L _pdbx_initial_refinement_model.details ? #