HEADER LIPID BINDING PROTEIN 09-FEB-07 2OU1 OBSLTE 09-MAY-18 2OU1 TITLE STRUCTURES OF APOLIPOPROTEIN A-II AND A LIPID SURROGATE COMPLEX TITLE 2 PROVIDE INSIGHTS INTO APOLIPOPROTEIN-LIPID INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN A-II; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 FRAGMENT: RESIDUES 24-100 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS APOLIPOPROTEIN, HIGH DENSITY LIPOPROTEINS, HELIX, APOLIPOPROTEIN A- KEYWDS 2 II, CHOLESTEROL METABOLISM X-RAY DIFFRACTION, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.KUMAR,M.C.CARSON,M.M.HUSSAIN,H.M.K.MURTHY REVDAT 3 09-MAY-18 2OU1 1 OBSLTE JRNL REVDAT 2 24-FEB-09 2OU1 1 VERSN REVDAT 1 06-MAR-07 2OU1 0 SPRSDE 06-MAR-07 2OU1 1L6K JRNL AUTH W.K.JONES JRNL TITL FINDINGS OF RESEARCH MISCONDUCT JRNL REF FED REG. V. 83 16370 2018 JRNL REFN ISSN 0097-6326 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.S.KUMAR,M.CARSON,M.M.HUSSAIN,H.M.K.MURTHY REMARK 1 TITL STRUCTURES OF APOLIPOPROTEIN A-II AND A LIPID SURROGATE REMARK 1 TITL 2 COMPLEX PROVIDE INSIGHTS INTO APOLIPOPROTEIN-LIPID REMARK 1 TITL 3 INTERACTIONS REMARK 1 REF BIOCHEMISTRY V. 41 11681 2002 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 12269810 REMARK 1 DOI 10.1021/BI026069W REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 83187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 8318 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 915 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 558 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 ENTRY OBSOLETED IN RESPONSE TO US OFFICE OF RESEARCH INTEGRITY REMARK 5 NOTICE 2018-07782 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041584. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-93 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : GRAPHITE MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS X1000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : 0.07800 REMARK 200 R SYM FOR SHELL (I) : 0.07800 REMARK 200 FOR SHELL : 10.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: SIRAS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, COCL2, NICL2, COBALT HEXAMINE REMARK 280 CHLORIDE, LICL, PH 5.6-6.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.85000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7, 8, 9 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. CHAINS AB, CD, EF, GH, IJ REMARK 300 AND KL EACH FORM A DIMER THAT ASSOCIATE TO FORM THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 8 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 9 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 PHE A 63 REMARK 465 GLN A 77 REMARK 465 GLN B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 GLU B 8 REMARK 465 PHE B 15 REMARK 465 GLN B 77 REMARK 465 GLN C 1 REMARK 465 ALA C 2 REMARK 465 LYS C 3 REMARK 465 GLN C 77 REMARK 465 GLN D 1 REMARK 465 ALA D 2 REMARK 465 LYS D 3 REMARK 465 VAL D 7 REMARK 465 GLN D 77 REMARK 465 GLN E 1 REMARK 465 ALA E 2 REMARK 465 LYS E 3 REMARK 465 PHE E 63 REMARK 465 GLN E 77 REMARK 465 GLN F 1 REMARK 465 ALA F 2 REMARK 465 LYS F 3 REMARK 465 GLU F 8 REMARK 465 PHE F 15 REMARK 465 GLN F 77 REMARK 465 GLN G 1 REMARK 465 ALA G 2 REMARK 465 LYS G 3 REMARK 465 GLN G 77 REMARK 465 GLN H 1 REMARK 465 ALA H 2 REMARK 465 LYS H 3 REMARK 465 VAL H 7 REMARK 465 GLN H 77 REMARK 465 GLN I 1 REMARK 465 ALA I 2 REMARK 465 LYS I 3 REMARK 465 PHE I 63 REMARK 465 GLN I 77 REMARK 465 GLN J 1 REMARK 465 ALA J 2 REMARK 465 LYS J 3 REMARK 465 VAL J 7 REMARK 465 GLU J 8 REMARK 465 PHE J 15 REMARK 465 GLN J 77 REMARK 465 GLN K 1 REMARK 465 ALA K 2 REMARK 465 LYS K 3 REMARK 465 GLN K 77 REMARK 465 GLN L 1 REMARK 465 ALA L 2 REMARK 465 LYS L 3 REMARK 465 VAL L 7 REMARK 465 GLN L 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE LYS K 28 OE1 GLU K 69 2546 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 37 CD GLU A 37 OE2 0.075 REMARK 500 GLU B 37 CD GLU B 37 OE2 0.076 REMARK 500 GLU C 37 CD GLU C 37 OE2 0.076 REMARK 500 GLU D 37 CD GLU D 37 OE2 0.075 REMARK 500 GLU E 37 CD GLU E 37 OE2 0.077 REMARK 500 GLU F 37 CD GLU F 37 OE2 0.076 REMARK 500 GLU G 37 CD GLU G 37 OE2 0.076 REMARK 500 GLU H 37 CD GLU H 37 OE2 0.076 REMARK 500 GLU I 37 CD GLU I 37 OE2 0.076 REMARK 500 GLU J 37 CD GLU J 37 OE2 0.076 REMARK 500 GLU K 37 CD GLU K 37 OE2 0.075 REMARK 500 GLU L 37 CD GLU L 37 OE2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 5 C - N - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 PRO B 5 C - N - CD ANGL. DEV. = -27.1 DEGREES REMARK 500 PRO D 5 C - N - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 PRO E 5 C - N - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 PRO F 5 C - N - CD ANGL. DEV. = -27.3 DEGREES REMARK 500 PRO H 5 C - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO I 5 C - N - CD ANGL. DEV. = -18.6 DEGREES REMARK 500 PRO J 5 C - N - CD ANGL. DEV. = -27.0 DEGREES REMARK 500 PRO L 5 C - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 6 82.29 -62.03 REMARK 500 LEU A 34 56.19 -140.93 REMARK 500 GLN A 35 -73.26 -168.07 REMARK 500 GLN A 48 -4.31 -140.40 REMARK 500 GLU A 59 -86.43 -92.15 REMARK 500 PRO B 5 -39.73 -152.18 REMARK 500 CYS B 6 43.20 -86.06 REMARK 500 LEU B 34 11.35 -142.18 REMARK 500 ALA B 36 48.06 -88.44 REMARK 500 GLU B 37 -63.98 -107.83 REMARK 500 LYS B 46 -30.95 -132.78 REMARK 500 GLU B 59 -76.20 -87.21 REMARK 500 LEU C 34 55.50 -140.68 REMARK 500 GLN C 35 -93.97 -159.05 REMARK 500 GLU C 37 -75.78 -87.63 REMARK 500 GLN C 48 -41.13 -130.86 REMARK 500 LEU D 34 -23.34 -159.03 REMARK 500 ALA D 36 45.63 -87.38 REMARK 500 CYS E 6 82.52 -61.97 REMARK 500 LEU E 34 55.34 -141.20 REMARK 500 GLN E 35 -73.21 -168.03 REMARK 500 GLN E 48 -3.80 -140.17 REMARK 500 GLU E 59 -86.36 -92.13 REMARK 500 PRO F 5 -38.82 -152.81 REMARK 500 CYS F 6 30.43 -82.31 REMARK 500 LEU F 34 11.01 -142.05 REMARK 500 ALA F 36 45.72 -88.12 REMARK 500 GLU F 37 -64.18 -104.82 REMARK 500 GLU F 59 -76.31 -87.36 REMARK 500 LEU G 34 54.51 -140.47 REMARK 500 GLN G 35 -94.13 -157.56 REMARK 500 GLU G 37 -75.96 -84.85 REMARK 500 LEU H 34 -12.39 -168.65 REMARK 500 ALA H 36 45.34 -89.27 REMARK 500 CYS I 6 79.94 -63.61 REMARK 500 GLN I 35 -83.60 -171.61 REMARK 500 ALA I 36 -71.19 -39.73 REMARK 500 GLU I 59 -83.79 -96.07 REMARK 500 PRO J 5 -65.82 -147.51 REMARK 500 GLU J 59 -74.62 -90.74 REMARK 500 GLN K 35 -92.45 -158.83 REMARK 500 GLU K 37 -74.11 -85.77 REMARK 500 PRO L 5 -51.00 -130.96 REMARK 500 LEU L 34 -1.41 -162.20 REMARK 500 ALA L 36 45.53 -91.66 REMARK 500 GLU L 37 -76.89 -67.34 REMARK 500 GLU L 59 -66.94 -90.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L6L RELATED DB: PDB REMARK 900 STRUCTURES OF APOLIPOPROTEIN A-II AND A LIPID SURROGATE COMPLEX REMARK 900 PROVIDE INSIGHTS INTO APOLIPOPROTEIN-LIPID INTERACTIONS DBREF 2OU1 A 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 B 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 C 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 D 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 E 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 F 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 G 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 H 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 I 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 J 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 K 1 77 UNP P02652 APOA2_HUMAN 24 100 DBREF 2OU1 L 1 77 UNP P02652 APOA2_HUMAN 24 100 SEQRES 1 A 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 A 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 A 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 A 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 A 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 A 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 B 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 B 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 B 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 B 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 B 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 B 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 C 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 C 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 C 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 C 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 C 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 C 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 D 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 D 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 D 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 D 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 D 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 D 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 E 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 E 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 E 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 E 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 E 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 E 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 F 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 F 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 F 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 F 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 F 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 F 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 G 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 G 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 G 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 G 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 G 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 G 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 H 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 H 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 H 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 H 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 H 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 H 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 I 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 I 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 I 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 I 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 I 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 I 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 J 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 J 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 J 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 J 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 J 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 J 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 K 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 K 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 K 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 K 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 K 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 K 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN SEQRES 1 L 77 GLN ALA LYS GLU PRO CYS VAL GLU SER LEU VAL SER GLN SEQRES 2 L 77 TYR PHE GLN THR VAL THR ASP TYR GLY LYS ASP LEU MET SEQRES 3 L 77 GLU LYS VAL LYS SER PRO GLU LEU GLN ALA GLU ALA LYS SEQRES 4 L 77 SER TYR PHE GLU LYS SER LYS GLU GLN LEU THR PRO LEU SEQRES 5 L 77 ILE LYS LYS ALA GLY THR GLU LEU VAL ASN PHE LEU SER SEQRES 6 L 77 TYR PHE VAL GLU LEU GLY THR GLN PRO ALA THR GLN FORMUL 13 HOH *558(H2 O) HELIX 1 1 VAL A 7 LEU A 34 1 28 HELIX 2 2 LYS A 39 GLU A 47 1 9 HELIX 3 3 THR A 50 LYS A 55 1 6 HELIX 4 4 LYS A 55 LEU A 60 1 6 HELIX 5 5 LEU A 64 GLN A 73 1 10 HELIX 6 6 SER B 9 TYR B 14 1 6 HELIX 7 7 GLN B 16 SER B 31 1 16 HELIX 8 8 GLU B 37 SER B 45 1 9 HELIX 9 9 GLN B 48 LYS B 55 1 8 HELIX 10 10 LYS B 55 GLN B 73 1 19 HELIX 11 11 VAL C 7 SER C 31 1 25 HELIX 12 12 PRO C 32 GLN C 35 5 4 HELIX 13 13 GLU C 37 THR C 50 1 14 HELIX 14 14 THR C 50 LYS C 55 1 6 HELIX 15 15 LYS C 55 GLN C 73 1 19 HELIX 16 16 GLU D 8 SER D 31 1 24 HELIX 17 17 SER D 40 SER D 45 1 6 HELIX 18 18 LYS D 46 GLN D 48 5 3 HELIX 19 19 LEU D 49 GLN D 73 1 25 HELIX 20 20 VAL E 7 SER E 31 1 25 HELIX 21 21 PRO E 32 GLN E 35 5 4 HELIX 22 22 LYS E 39 GLU E 47 1 9 HELIX 23 23 THR E 50 LYS E 55 1 6 HELIX 24 24 LYS E 55 LEU E 60 1 6 HELIX 25 25 LEU E 64 GLN E 73 1 10 HELIX 26 26 SER F 9 TYR F 14 1 6 HELIX 27 27 GLN F 16 SER F 31 1 16 HELIX 28 28 GLU F 37 SER F 45 1 9 HELIX 29 29 GLN F 48 LYS F 55 1 8 HELIX 30 30 LYS F 55 GLN F 73 1 19 HELIX 31 31 VAL G 7 SER G 31 1 25 HELIX 32 32 PRO G 32 GLN G 35 5 4 HELIX 33 33 GLU G 37 THR G 50 1 14 HELIX 34 34 THR G 50 LYS G 55 1 6 HELIX 35 35 LYS G 55 GLN G 73 1 19 HELIX 36 36 GLU H 8 SER H 31 1 24 HELIX 37 37 PRO H 32 LEU H 34 5 3 HELIX 38 38 SER H 40 SER H 45 1 6 HELIX 39 39 LYS H 46 GLN H 48 5 3 HELIX 40 40 LEU H 49 GLN H 73 1 25 HELIX 41 41 VAL I 7 THR I 17 1 11 HELIX 42 42 THR I 17 LEU I 34 1 18 HELIX 43 43 LYS I 39 GLU I 47 1 9 HELIX 44 44 THR I 50 LYS I 55 1 6 HELIX 45 45 LYS I 55 LEU I 60 1 6 HELIX 46 46 LEU I 64 GLN I 73 1 10 HELIX 47 47 SER J 9 TYR J 14 1 6 HELIX 48 48 GLN J 16 SER J 31 1 16 HELIX 49 49 GLU J 37 SER J 45 1 9 HELIX 50 50 GLN J 48 LYS J 55 1 8 HELIX 51 51 LYS J 55 GLN J 73 1 19 HELIX 52 52 VAL K 7 SER K 31 1 25 HELIX 53 53 PRO K 32 GLN K 35 5 4 HELIX 54 54 GLU K 37 THR K 50 1 14 HELIX 55 55 THR K 50 LYS K 55 1 6 HELIX 56 56 LYS K 55 GLN K 73 1 19 HELIX 57 57 GLU L 8 SER L 31 1 24 HELIX 58 58 SER L 40 SER L 45 1 6 HELIX 59 59 LYS L 46 GLN L 48 5 3 HELIX 60 60 LEU L 49 LYS L 55 1 7 HELIX 61 61 LYS L 55 GLN L 73 1 19 SSBOND 1 CYS A 6 CYS B 6 1555 1555 2.03 SSBOND 2 CYS C 6 CYS D 6 1555 1555 2.04 SSBOND 3 CYS E 6 CYS F 6 1555 1555 2.03 SSBOND 4 CYS G 6 CYS H 6 1555 1555 2.04 SSBOND 5 CYS I 6 CYS J 6 1555 1555 2.03 SSBOND 6 CYS K 6 CYS L 6 1555 1555 2.04 CRYST1 98.900 125.700 55.300 90.00 93.40 90.00 P 1 21 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010111 0.000000 0.000601 0.00000 SCALE2 0.000000 0.007955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018115 0.00000