HEADER OXIDOREDUCTASE 12-FEB-07 2OUW TITLE CRYSTAL STRUCTURE OF ALKYLHYDROPEROXIDASE AHPD CORE (YP_425393.1) FROM TITLE 2 RHODOSPIRILLUM RUBRUM ATCC 11170 AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKYLHYDROPEROXIDASE AHPD CORE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 3 ORGANISM_TAXID: 1085; SOURCE 4 STRAIN: NCIB 8255; SOURCE 5 ATCC: 11170; SOURCE 6 GENE: YP_425393.1, RRU_A0301; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_425393.1, CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY, KEYWDS 2 ALKYLHYDROPEROXIDASE AHPD CORE, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2OUW 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 2OUW 1 REMARK REVDAT 4 18-OCT-17 2OUW 1 REMARK REVDAT 3 13-JUL-11 2OUW 1 VERSN REVDAT 2 24-FEB-09 2OUW 1 VERSN REVDAT 1 06-MAR-07 2OUW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF ALKYLHYDROPEROXIDASE AHPD CORE JRNL TITL 2 (YP_425393.1) FROM RHODOSPIRILLUM RUBRUM ATCC 11170 AT 1.95 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 986 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1311 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.08000 REMARK 3 B22 (A**2) : -2.08000 REMARK 3 B33 (A**2) : 3.12000 REMARK 3 B12 (A**2) : -1.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.379 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2098 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1979 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2868 ; 1.393 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4553 ; 1.348 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 4.692 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;39.936 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 332 ;12.726 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2378 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 404 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 517 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1923 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1087 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1270 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.341 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.364 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 79 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.136 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1393 ; 1.504 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 561 ; 0.519 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2227 ; 2.352 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 726 ; 4.228 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 634 ; 5.321 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 134 4 REMARK 3 1 B 0 B 134 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1880 ; 0.21 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1880 ; 0.76 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0358 11.1958 34.4190 REMARK 3 T TENSOR REMARK 3 T11: -0.0883 T22: -0.0948 REMARK 3 T33: -0.1868 T12: 0.0179 REMARK 3 T13: 0.0091 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.4961 L22: 2.3994 REMARK 3 L33: 1.1125 L12: 0.0932 REMARK 3 L13: 0.5059 L23: 1.4670 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.2944 S13: 0.3647 REMARK 3 S21: 0.0714 S22: -0.0651 S23: -0.0438 REMARK 3 S31: -0.1787 S32: -0.2643 S33: 0.0529 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9770 -4.3799 19.8851 REMARK 3 T TENSOR REMARK 3 T11: -0.1593 T22: -0.1386 REMARK 3 T33: -0.2081 T12: -0.0145 REMARK 3 T13: 0.0115 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.5822 L22: 2.5870 REMARK 3 L33: 1.3133 L12: 0.9281 REMARK 3 L13: 0.9822 L23: 1.7749 REMARK 3 S TENSOR REMARK 3 S11: 0.1131 S12: 0.0541 S13: -0.0896 REMARK 3 S21: 0.0214 S22: -0.1625 S23: 0.1316 REMARK 3 S31: 0.0256 S32: -0.2156 S33: 0.0493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 ACETATE (ACY) MOLECULES FROM THE CRYSTALLIZATION WERE MODELED REMARK 3 INTO THE STRUCTURE. A SODIUM ION WAS MODELED AT A SPECIAL REMARK 3 POSITION BETWEEN TWO SYMMETRY- RELATED ASPARTIC ACID SIDECHAINS. REMARK 3 5. ELECTRON DENSITY INDICATES THE PRESENCE OF AN INTRA-SUBUNIT REMARK 3 DISULFIDE BOND BETWEEN THE SIDECHAINS OF CYS 83 AND CYS 86 OF REMARK 3 BOTH SUBUNITS IN THE ASYMMETRIC UNIT. 6. THE REFINED CRYSTAL REMARK 3 STRUCTURE INDICATES THE SIDECHAIN OF GLU A130 IS SITUATED NEAR A REMARK 3 CRYSTALLOGRAPHIC SYMMETRY AXIS, HOWEVER THE POSITIONS OF THE REMARK 3 ATOMS FOR THIS RESIDUE ON SUBUNIT A COULD NOT BE RELIABLY REMARK 3 MODELED. 7. UNKNOWN LIGANDS (UNL) WERE MODELED INTO THE PUTATIVE REMARK 3 ACTIVE SITES ON BOTH SUBUNITS IN THE ASYMMETRIC UNIT. REMARK 4 REMARK 4 2OUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97925 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.507 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 5.650 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.69 REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M (NH4)2SO4, 25.0% PEG REMARK 280 4000, 0.1M ACETATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K, PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.35350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.35350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.35350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.35350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.35350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.35350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF THE HEXAMER AS A REMARK 300 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 29320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -251.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 148 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 135 REMARK 465 GLY A 136 REMARK 465 LYS A 137 REMARK 465 GLY B 136 REMARK 465 LYS B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 16 CG CD REMARK 470 GLU A 17 CD OE1 OE2 REMARK 470 LYS A 19 NZ REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 GLU A 53 CD OE1 OE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 GLU B 17 CD OE1 OE2 REMARK 470 ASP B 32 OD1 OD2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ASP B 135 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 65 C - N - CA ANGL. DEV. = 22.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 65 152.91 76.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 138 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASP A 8 OD2 83.2 REMARK 620 3 ASP A 8 OD1 52.4 124.7 REMARK 620 4 GLU A 11 OE2 73.7 65.5 70.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 138 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 140 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 140 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 370502 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2OUW A 1 137 UNP Q2RXN9 Q2RXN9_RHORT 1 137 DBREF 2OUW B 1 137 UNP Q2RXN9 Q2RXN9_RHORT 1 137 SEQADV 2OUW GLY A 0 UNP Q2RXN9 EXPRESSION TAG SEQADV 2OUW MSE A 1 UNP Q2RXN9 MET 1 MODIFIED RESIDUE SEQADV 2OUW MSE A 59 UNP Q2RXN9 MET 59 MODIFIED RESIDUE SEQADV 2OUW MSE A 72 UNP Q2RXN9 MET 72 MODIFIED RESIDUE SEQADV 2OUW MSE A 99 UNP Q2RXN9 MET 99 MODIFIED RESIDUE SEQADV 2OUW MSE A 124 UNP Q2RXN9 MET 124 MODIFIED RESIDUE SEQADV 2OUW GLY B 0 UNP Q2RXN9 EXPRESSION TAG SEQADV 2OUW MSE B 1 UNP Q2RXN9 MET 1 MODIFIED RESIDUE SEQADV 2OUW MSE B 59 UNP Q2RXN9 MET 59 MODIFIED RESIDUE SEQADV 2OUW MSE B 72 UNP Q2RXN9 MET 72 MODIFIED RESIDUE SEQADV 2OUW MSE B 99 UNP Q2RXN9 MET 99 MODIFIED RESIDUE SEQADV 2OUW MSE B 124 UNP Q2RXN9 MET 124 MODIFIED RESIDUE SEQRES 1 A 138 GLY MSE ALA THR VAL ARG LEU LEU ASP ASP ALA GLU ILE SEQRES 2 A 138 SER THR LEU PRO GLU VAL LYS ALA VAL PHE ASP ASP ILE SEQRES 3 A 138 ARG ALA THR ARG GLY SER ASP PHE VAL ASN ASN ILE TRP SEQRES 4 A 138 ARG GLY LEU ALA ASN ASP PRO ALA LEU LEU LYS ARG THR SEQRES 5 A 138 TRP GLU GLN VAL LYS THR VAL MSE VAL GLY GLU GLY ALA SEQRES 6 A 138 LEU ASP PRO LEU THR ARG GLU MSE ILE TYR LEU ALA VAL SEQRES 7 A 138 SER THR ALA ASN SER CYS SER TYR CYS ALA HIS SER HIS SEQRES 8 A 138 THR ALA ALA ALA ARG ALA LYS GLY MSE THR PRO ALA GLN SEQRES 9 A 138 HIS ALA GLU VAL LEU ALA ILE ILE GLY LEU ALA ALA GLN SEQRES 10 A 138 THR ASN ALA LEU VAL THR ALA MSE GLN ILE PRO VAL ASP SEQRES 11 A 138 GLU ALA PHE LEU VAL ASP GLY LYS SEQRES 1 B 138 GLY MSE ALA THR VAL ARG LEU LEU ASP ASP ALA GLU ILE SEQRES 2 B 138 SER THR LEU PRO GLU VAL LYS ALA VAL PHE ASP ASP ILE SEQRES 3 B 138 ARG ALA THR ARG GLY SER ASP PHE VAL ASN ASN ILE TRP SEQRES 4 B 138 ARG GLY LEU ALA ASN ASP PRO ALA LEU LEU LYS ARG THR SEQRES 5 B 138 TRP GLU GLN VAL LYS THR VAL MSE VAL GLY GLU GLY ALA SEQRES 6 B 138 LEU ASP PRO LEU THR ARG GLU MSE ILE TYR LEU ALA VAL SEQRES 7 B 138 SER THR ALA ASN SER CYS SER TYR CYS ALA HIS SER HIS SEQRES 8 B 138 THR ALA ALA ALA ARG ALA LYS GLY MSE THR PRO ALA GLN SEQRES 9 B 138 HIS ALA GLU VAL LEU ALA ILE ILE GLY LEU ALA ALA GLN SEQRES 10 B 138 THR ASN ALA LEU VAL THR ALA MSE GLN ILE PRO VAL ASP SEQRES 11 B 138 GLU ALA PHE LEU VAL ASP GLY LYS MODRES 2OUW MSE A 1 MET SELENOMETHIONINE MODRES 2OUW MSE A 59 MET SELENOMETHIONINE MODRES 2OUW MSE A 72 MET SELENOMETHIONINE MODRES 2OUW MSE A 99 MET SELENOMETHIONINE MODRES 2OUW MSE A 124 MET SELENOMETHIONINE MODRES 2OUW MSE B 1 MET SELENOMETHIONINE MODRES 2OUW MSE B 59 MET SELENOMETHIONINE MODRES 2OUW MSE B 72 MET SELENOMETHIONINE MODRES 2OUW MSE B 99 MET SELENOMETHIONINE MODRES 2OUW MSE B 124 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 59 8 HET MSE A 72 8 HET MSE A 99 8 HET MSE A 124 8 HET MSE B 1 8 HET MSE B 59 8 HET MSE B 72 8 HET MSE B 99 8 HET MSE B 124 8 HET NA A 138 1 HET UNL A 139 5 HET ACY A 140 4 HET ACY A 141 4 HET UNL B 138 8 HET ACY B 139 4 HET ACY B 140 4 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM UNL UNKNOWN LIGAND HETNAM ACY ACETIC ACID FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NA NA 1+ FORMUL 5 ACY 4(C2 H4 O2) FORMUL 10 HOH *141(H2 O) HELIX 1 1 ASP A 8 THR A 14 1 7 HELIX 2 2 LEU A 15 GLY A 30 1 16 HELIX 3 3 ASN A 35 ALA A 42 1 8 HELIX 4 4 ASP A 44 VAL A 60 1 17 HELIX 5 5 ASP A 66 ASN A 81 1 16 HELIX 6 6 CYS A 83 LYS A 97 1 15 HELIX 7 7 THR A 100 GLN A 125 1 26 HELIX 8 8 ASP A 129 VAL A 134 5 6 HELIX 9 9 ASP B 8 SER B 13 1 6 HELIX 10 10 LEU B 15 GLY B 30 1 16 HELIX 11 11 ASN B 35 ALA B 42 1 8 HELIX 12 12 ASP B 44 VAL B 60 1 17 HELIX 13 13 ASP B 66 ASN B 81 1 16 HELIX 14 14 CYS B 83 LYS B 97 1 15 HELIX 15 15 THR B 100 GLN B 125 1 26 HELIX 16 16 ASP B 129 VAL B 134 5 6 SSBOND 1 CYS A 83 CYS A 86 1555 1555 2.07 SSBOND 2 CYS B 83 CYS B 86 1555 1555 2.09 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C VAL A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N VAL A 60 1555 1555 1.32 LINK C GLU A 71 N MSE A 72 1555 1555 1.33 LINK C MSE A 72 N ILE A 73 1555 1555 1.32 LINK C GLY A 98 N MSE A 99 1555 1555 1.34 LINK C MSE A 99 N THR A 100 1555 1555 1.32 LINK C ALA A 123 N MSE A 124 1555 1555 1.34 LINK C MSE A 124 N GLN A 125 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.33 LINK C VAL B 58 N MSE B 59 1555 1555 1.33 LINK C MSE B 59 N VAL B 60 1555 1555 1.34 LINK C GLU B 71 N MSE B 72 1555 1555 1.33 LINK C MSE B 72 N ILE B 73 1555 1555 1.33 LINK C GLY B 98 N MSE B 99 1555 1555 1.34 LINK C MSE B 99 N THR B 100 1555 1555 1.33 LINK C ALA B 123 N MSE B 124 1555 1555 1.34 LINK C MSE B 124 N GLN B 125 1555 1555 1.33 LINK OD2 ASP A 8 NA NA A 138 1555 1555 2.07 LINK OD2 ASP A 8 NA NA A 138 11555 1555 2.28 LINK OD1 ASP A 8 NA NA A 138 1555 1555 2.69 LINK OE2AGLU A 11 NA NA A 138 1555 1555 2.91 SITE 1 AC1 2 ASP A 8 GLU A 11 SITE 1 AC2 9 TYR A 74 TYR A 85 CYS A 86 SER A 89 SITE 2 AC2 9 HIS A 90 HOH A 142 HOH A 199 THR B 117 SITE 3 AC2 9 ASN B 118 SITE 1 AC3 13 THR A 117 ASN A 118 ARG B 29 ASN B 35 SITE 2 AC3 13 TRP B 38 VAL B 55 TYR B 74 TYR B 85 SITE 3 AC3 13 CYS B 86 SER B 89 HIS B 90 ACY B 140 SITE 4 AC3 13 HOH B 161 SITE 1 AC4 4 ARG A 95 HIS A 104 HOH A 144 HOH A 198 SITE 1 AC5 5 ASP B 44 ARG B 50 ALA B 105 GLU B 106 SITE 2 AC5 5 ALA B 109 SITE 1 AC6 6 VAL A 4 GLY A 40 ASN A 43 ALA A 105 SITE 2 AC6 6 LEU A 108 HOH A 144 SITE 1 AC7 5 ARG B 29 VAL B 55 LYS B 97 UNL B 138 SITE 2 AC7 5 HOH B 217 CRYST1 62.683 62.683 216.707 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015950 0.009210 0.000000 0.00000 SCALE2 0.000000 0.018420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004610 0.00000