HEADER HYDROLASE 13-FEB-07 2OV6 TITLE THE NMR STRUCTURE OF SUBUNIT F OF THE METHANOGENIC A1AO ATP SYNTHASE TITLE 2 AND ITS INTERACTION WITH THE NUCLEOTIDE-BINDING SUBUNIT B COMPND MOL_ID: 1; COMPND 2 MOLECULE: V-TYPE ATP SYNTHASE SUBUNIT F; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: V-TYPE ATPASE SUBUNIT F, SUBUNIT F A1AO ATP SYNTHASE; COMPND 5 EC: 3.6.3.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_TAXID: 192952; SOURCE 4 STRAIN: GO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9D1-HIS3 KEYWDS F SUBUNIT, A1AO ATP SYNTHASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.GAYEN,V.SUBRAMANIAN,G.BIUKOVIC REVDAT 5 14-JUN-23 2OV6 1 REMARK REVDAT 4 26-FEB-20 2OV6 1 REMARK REVDAT 3 13-JUL-11 2OV6 1 VERSN REVDAT 2 24-FEB-09 2OV6 1 VERSN REVDAT 1 25-DEC-07 2OV6 0 JRNL AUTH S.GAYEN,S.VIVEKANANDAN,G.BIUKOVIC,G.GRUBER,H.S.YOON JRNL TITL NMR SOLUTION STRUCTURE OF SUBUNIT F OF THE METHANOGENIC A1AO JRNL TITL 2 ADENOSINE TRIPHOSPHATE SYNTHASE AND ITS INTERACTION WITH THE JRNL TITL 3 NUCLEOTIDE-BINDING SUBUNIT B. JRNL REF BIOCHEMISTRY V. 46 11684 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17910473 JRNL DOI 10.1021/BI701102N REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUENTERT, P. (CYANA), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TOTAL NMR CONSTRAINTS 863, TORSIONAL REMARK 3 ANGLE RESTRAINTS 184, HYDROGEN BOND RESTRAINTS 32 REMARK 4 REMARK 4 2OV6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041625. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM F SUBUNIT UNIFORMLY REMARK 210 LABELED 15N; 15N, 13C; 25MM REMARK 210 PHOSPHATE BUFFER PH 6.5; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-EDITED-HSQC-NOESY; HNCA; REMARK 210 HNCACB; CBCACONH; HNCO; HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, TOPSPIN 1.3, SPARKY REMARK 210 3.112 REMARK 210 METHOD USED : DISTANCE CONSTRAINTS, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 20 45.24 -109.20 REMARK 500 1 SER A 21 108.86 178.10 REMARK 500 1 ASP A 54 -30.75 -131.29 REMARK 500 1 LEU A 58 76.23 -116.60 REMARK 500 1 PRO A 59 -79.85 -69.73 REMARK 500 1 LEU A 62 -65.94 -98.48 REMARK 500 1 PRO A 72 -169.97 -69.71 REMARK 500 1 SER A 80 -70.48 -101.14 REMARK 500 1 THR A 85 -151.44 -136.70 REMARK 500 1 LYS A 92 -59.66 74.72 REMARK 500 2 ILE A 20 51.40 -109.64 REMARK 500 2 SER A 21 113.14 176.21 REMARK 500 2 THR A 26 79.11 -115.76 REMARK 500 2 VAL A 45 -73.22 -104.62 REMARK 500 2 ASP A 54 -30.71 -131.49 REMARK 500 2 LEU A 58 75.27 -113.30 REMARK 500 2 PRO A 59 -79.52 -69.73 REMARK 500 2 LEU A 62 -66.99 -97.53 REMARK 500 2 PRO A 72 -165.71 -69.75 REMARK 500 2 VAL A 75 88.45 -64.97 REMARK 500 2 SER A 80 -55.31 -141.41 REMARK 500 2 SER A 82 95.32 58.78 REMARK 500 2 THR A 85 -73.77 -130.83 REMARK 500 2 SER A 86 -172.91 -177.69 REMARK 500 2 LYS A 90 140.98 -175.16 REMARK 500 2 LYS A 92 -41.42 -170.15 REMARK 500 3 GLU A 2 -56.50 74.66 REMARK 500 3 ILE A 20 48.79 -109.49 REMARK 500 3 SER A 21 111.92 177.51 REMARK 500 3 VAL A 45 -75.69 -102.36 REMARK 500 3 ASP A 54 -36.07 -132.39 REMARK 500 3 LEU A 58 73.95 -117.91 REMARK 500 3 PRO A 59 -80.78 -69.74 REMARK 500 3 LEU A 62 -64.10 -98.89 REMARK 500 3 PRO A 72 -166.77 -69.75 REMARK 500 3 VAL A 75 91.47 -63.61 REMARK 500 3 LEU A 77 93.03 -69.84 REMARK 500 3 SER A 82 -74.13 -62.80 REMARK 500 3 ARG A 88 -175.62 -176.28 REMARK 500 3 LYS A 92 -61.95 73.82 REMARK 500 4 ILE A 20 47.04 -109.35 REMARK 500 4 SER A 21 111.37 176.85 REMARK 500 4 VAL A 45 -74.96 -100.89 REMARK 500 4 ASP A 54 -31.17 -132.29 REMARK 500 4 PRO A 59 -82.02 -69.74 REMARK 500 4 LEU A 62 -62.94 -99.57 REMARK 500 4 PRO A 72 -169.54 -69.80 REMARK 500 4 VAL A 75 99.40 -69.27 REMARK 500 4 SER A 82 120.22 -177.60 REMARK 500 4 GLU A 89 114.98 -170.53 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15046 RELATED DB: BMRB REMARK 900 1H, 13C AND 15N RESONANCE ASSIGNMENTS OF SUBUNIT F OF THE REMARK 900 METHANOGENIC A1AO ATP SYNTHASE DBREF 2OV6 A 1 101 UNP Q60185 VATF_METMA 1 101 SEQRES 1 A 101 MET GLU LEU ALA VAL ILE GLY LYS SER GLU PHE VAL THR SEQRES 2 A 101 GLY PHE ARG LEU ALA GLY ILE SER LYS VAL TYR GLU THR SEQRES 3 A 101 PRO ASP ILE PRO ALA THR GLU SER ALA VAL ARG SER VAL SEQRES 4 A 101 LEU GLU ASP LYS SER VAL GLY ILE LEU VAL MET HIS ASN SEQRES 5 A 101 ASP ASP ILE GLY ASN LEU PRO GLU VAL LEU ARG LYS ASN SEQRES 6 A 101 LEU ASN GLU SER VAL GLN PRO THR VAL VAL ALA LEU GLY SEQRES 7 A 101 GLY SER GLY SER GLY SER THR SER LEU ARG GLU LYS ILE SEQRES 8 A 101 LYS GLN ALA VAL GLY VAL ASP LEU TRP LYS HELIX 1 1 LYS A 8 GLY A 19 1 12 HELIX 2 2 ALA A 31 LYS A 43 1 13 HELIX 3 3 ASN A 52 GLY A 56 1 5 HELIX 4 4 LEU A 62 VAL A 70 1 9 HELIX 5 5 LYS A 92 ALA A 94 5 3 HELIX 6 6 VAL A 95 LYS A 101 1 7 SHEET 1 A 4 LYS A 22 GLU A 25 0 SHEET 2 A 4 LEU A 3 GLY A 7 1 N VAL A 5 O LYS A 22 SHEET 3 A 4 ILE A 47 HIS A 51 1 O VAL A 49 N ILE A 6 SHEET 4 A 4 VAL A 74 LEU A 77 1 O VAL A 75 N LEU A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1