data_2OVN # _entry.id 2OVN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OVN pdb_00002ovn 10.2210/pdb2ovn/pdb RCSB RCSB041642 ? ? WWPDB D_1000041642 ? ? # _pdbx_database_status.entry_id 2OVN _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-02-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matousek, W.M.' 1 'Alexandrescu, A.T.' 2 # _citation.id primary _citation.title 'Molecular basis of coiled-coil formation.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 104 _citation.page_first 7062 _citation.page_last 7067 _citation.year 2007 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17438295 _citation.pdbx_database_id_DOI 10.1073/pnas.0700321104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Steinmetz, M.O.' 1 ? primary 'Jelesarov, I.' 2 ? primary 'Matousek, W.M.' 3 ? primary 'Honnappa, S.' 4 ? primary 'Jahnke, W.' 5 ? primary 'Missimer, J.H.' 6 ? primary 'Frank, S.' 7 ? primary 'Alexandrescu, A.T.' 8 ? primary 'Kammerer, R.A.' 9 ? # _cell.entry_id 2OVN _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2OVN _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'General control protein GCN4' _entity.formula_weight 2016.301 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Amino acid biosynthesis regulatory protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NYHLENEVARLKKLVGE _entity_poly.pdbx_seq_one_letter_code_can NYHLENEVARLKKLVGE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 TYR n 1 3 HIS n 1 4 LEU n 1 5 GLU n 1 6 ASN n 1 7 GLU n 1 8 VAL n 1 9 ALA n 1 10 ARG n 1 11 LEU n 1 12 LYS n 1 13 LYS n 1 14 LEU n 1 15 VAL n 1 16 GLY n 1 17 GLU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'FMOC synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GCN4_YEAST _struct_ref.pdbx_db_accession P03069 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code NYHLENEVARLKKLVGE _struct_ref.pdbx_align_begin 264 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2OVN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03069 _struct_ref_seq.db_align_beg 264 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 16 _struct_ref_seq.pdbx_auth_seq_align_end 32 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria '20 lowest energy structures' _pdbx_nmr_ensemble.entry_id 2OVN _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_software.name Felix _pdbx_nmr_software.version 2000.1 _pdbx_nmr_software.classification 'data analysis' _pdbx_nmr_software.authors ? _pdbx_nmr_software.ordinal 1 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 2OVN _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2OVN _struct.title 'NMR structure of the GCN4 trigger peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OVN _struct_keywords.text 'GCN4, coiled-coil, trigger peptide, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 1 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id VAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 15 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 16 _struct_conf.end_auth_comp_id VAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 30 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2OVN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 16 16 ASN ASN A . n A 1 2 TYR 2 17 17 TYR TYR A . n A 1 3 HIS 3 18 18 HIS HIS A . n A 1 4 LEU 4 19 19 LEU LEU A . n A 1 5 GLU 5 20 20 GLU GLU A . n A 1 6 ASN 6 21 21 ASN ASN A . n A 1 7 GLU 7 22 22 GLU GLU A . n A 1 8 VAL 8 23 23 VAL VAL A . n A 1 9 ALA 9 24 24 ALA ALA A . n A 1 10 ARG 10 25 25 ARG ARG A . n A 1 11 LEU 11 26 26 LEU LEU A . n A 1 12 LYS 12 27 27 LYS LYS A . n A 1 13 LYS 13 28 28 LYS LYS A . n A 1 14 LEU 14 29 29 LEU LEU A . n A 1 15 VAL 15 30 30 VAL VAL A . n A 1 16 GLY 16 31 31 GLY GLY A . n A 1 17 GLU 17 32 32 GLU GLU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-03 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HIS 18 ? ? H A GLU 22 ? ? 1.52 2 1 O A GLU 22 ? ? H A LEU 26 ? ? 1.59 3 2 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 4 3 O A HIS 18 ? ? H A GLU 22 ? ? 1.51 5 3 O A GLU 22 ? ? H A LEU 26 ? ? 1.60 6 4 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 7 5 O A HIS 18 ? ? H A GLU 22 ? ? 1.51 8 5 O A LEU 19 ? ? H A VAL 23 ? ? 1.58 9 6 O A HIS 18 ? ? H A GLU 22 ? ? 1.51 10 7 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 11 8 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 12 9 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 13 10 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 14 11 O A HIS 18 ? ? H A GLU 22 ? ? 1.49 15 12 O A HIS 18 ? ? H A GLU 22 ? ? 1.51 16 12 O A LEU 19 ? ? H A VAL 23 ? ? 1.60 17 13 O A HIS 18 ? ? H A GLU 22 ? ? 1.49 18 14 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 19 15 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 20 16 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 21 17 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 22 18 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 23 19 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 24 20 O A HIS 18 ? ? H A GLU 22 ? ? 1.50 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 17 ? ? 60.62 170.63 2 2 TYR A 17 ? ? 60.49 170.51 3 3 TYR A 17 ? ? 60.61 170.76 4 4 TYR A 17 ? ? 60.37 170.54 5 5 TYR A 17 ? ? 177.43 177.95 6 6 TYR A 17 ? ? 176.30 177.24 7 7 TYR A 17 ? ? 60.58 170.47 8 7 VAL A 30 ? ? 34.49 70.80 9 8 TYR A 17 ? ? 176.67 177.32 10 9 TYR A 17 ? ? 60.29 170.31 11 10 TYR A 17 ? ? 60.08 176.06 12 11 TYR A 17 ? ? 60.43 170.48 13 11 VAL A 30 ? ? -33.10 121.86 14 12 TYR A 17 ? ? 177.49 177.95 15 13 TYR A 17 ? ? 60.38 170.64 16 14 TYR A 17 ? ? 60.56 170.56 17 15 TYR A 17 ? ? 60.54 170.52 18 16 TYR A 17 ? ? 60.66 170.52 19 17 TYR A 17 ? ? 176.18 176.91 20 18 TYR A 17 ? ? 60.57 170.49 21 18 VAL A 30 ? ? 35.26 57.70 22 19 TYR A 17 ? ? 177.49 178.10 23 20 TYR A 17 ? ? 176.79 177.00 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 25 ? ? 0.312 'SIDE CHAIN' 2 2 ARG A 25 ? ? 0.318 'SIDE CHAIN' 3 3 ARG A 25 ? ? 0.282 'SIDE CHAIN' 4 4 ARG A 25 ? ? 0.312 'SIDE CHAIN' 5 5 ARG A 25 ? ? 0.306 'SIDE CHAIN' 6 6 ARG A 25 ? ? 0.317 'SIDE CHAIN' 7 7 ARG A 25 ? ? 0.317 'SIDE CHAIN' 8 8 ARG A 25 ? ? 0.295 'SIDE CHAIN' 9 9 ARG A 25 ? ? 0.317 'SIDE CHAIN' 10 10 ARG A 25 ? ? 0.317 'SIDE CHAIN' 11 11 ARG A 25 ? ? 0.316 'SIDE CHAIN' 12 12 ARG A 25 ? ? 0.317 'SIDE CHAIN' 13 13 ARG A 25 ? ? 0.317 'SIDE CHAIN' 14 14 ARG A 25 ? ? 0.318 'SIDE CHAIN' 15 15 ARG A 25 ? ? 0.315 'SIDE CHAIN' 16 16 ARG A 25 ? ? 0.315 'SIDE CHAIN' 17 17 ARG A 25 ? ? 0.315 'SIDE CHAIN' 18 18 ARG A 25 ? ? 0.318 'SIDE CHAIN' 19 19 ARG A 25 ? ? 0.318 'SIDE CHAIN' 20 20 ARG A 25 ? ? 0.317 'SIDE CHAIN' #