HEADER UNKNOWN FUNCTION 16-FEB-07 2OWP TITLE CRYSTAL STRUCTURE OF A CYSTATIN-LIKE FOLD PROTEIN (BXE_B1374) FROM TITLE 2 BURKHOLDERIA XENOVORANS LB400 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN BXE_B1374; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 GENE: YP_553940.1, BXE_B1374, BXENO_B1622; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CYSTATIN-LIKE FOLD, DUF3225 FAMILY PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2OWP 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2OWP 1 REMARK REVDAT 4 13-JUL-11 2OWP 1 VERSN REVDAT 3 23-MAR-11 2OWP 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2OWP 1 VERSN REVDAT 1 27-FEB-07 2OWP 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN BXE_B1374 JRNL TITL 2 (YP_553940.1) FROM BURKHOLDERIA XENOVORANS LB400 AT 2.00 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 29613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2029 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.41000 REMARK 3 B22 (A**2) : 2.41000 REMARK 3 B33 (A**2) : -3.61000 REMARK 3 B12 (A**2) : 1.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2136 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1457 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2887 ; 1.501 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3515 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 5.720 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;34.635 ;23.265 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;14.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ; 9.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2341 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 437 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 406 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1517 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 993 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1147 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.119 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 16 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1535 ; 2.066 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 515 ; 0.410 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2096 ; 2.670 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 943 ; 5.093 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 6.649 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 127 2 REMARK 3 1 B 4 B 127 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 730 ; 0.050 ; 0.050 REMARK 3 MEDIUM POSITIONAL 1 A (A): 902 ; 0.440 ; 0.500 REMARK 3 TIGHT THERMAL 1 A (A**2): 730 ; 0.260 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 902 ; 0.950 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2330 40.3460 59.3970 REMARK 3 T TENSOR REMARK 3 T11: -0.2812 T22: -0.3126 REMARK 3 T33: -0.2143 T12: 0.0179 REMARK 3 T13: -0.0005 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.3085 L22: 0.7610 REMARK 3 L33: 2.3139 L12: -0.3492 REMARK 3 L13: 0.1763 L23: -0.2328 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: -0.0320 S13: -0.0773 REMARK 3 S21: 0.0269 S22: 0.0364 S23: 0.0448 REMARK 3 S31: 0.1889 S32: -0.0652 S33: 0.0534 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8070 50.7280 43.8930 REMARK 3 T TENSOR REMARK 3 T11: -0.2996 T22: -0.2849 REMARK 3 T33: -0.2086 T12: -0.0087 REMARK 3 T13: -0.0304 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.4949 L22: 0.8690 REMARK 3 L33: 2.3501 L12: -0.1236 REMARK 3 L13: 0.2551 L23: -0.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: 0.1742 S13: 0.1360 REMARK 3 S21: 0.0354 S22: -0.0172 S23: -0.0703 REMARK 3 S31: -0.2188 S32: 0.0846 S33: 0.0749 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. EDO, SO4 MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE REMARK 3 MODELED. REMARK 3 4. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2OWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1000041678. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.894 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : 0.13300 REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : 0.76000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.8M K2HPO4, 0.2M LI2SO4, REMARK 280 1.2M NAH2PO4, 0.1M CAPS PH 10.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.75200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.50400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.50400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.75200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 EBI PISA ANALYSIS SUPPORTS THE ASSIGNMENT OF REMARK 300 A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 54 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 61 O1 EDO A 135 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 127 109.65 -51.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 138 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 372960 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2OWP A 1 128 UNP Q13MU9 Q13MU9_BURXL 1 128 DBREF 2OWP B 1 128 UNP Q13MU9 Q13MU9_BURXL 1 128 SEQADV 2OWP GLY A 0 UNP Q13MU9 EXPRESSION TAG SEQADV 2OWP MSE A 1 UNP Q13MU9 MET 1 MODIFIED RESIDUE SEQADV 2OWP MSE A 31 UNP Q13MU9 MET 31 MODIFIED RESIDUE SEQADV 2OWP MSE A 103 UNP Q13MU9 MET 103 MODIFIED RESIDUE SEQADV 2OWP MSE A 127 UNP Q13MU9 MET 127 MODIFIED RESIDUE SEQADV 2OWP GLY B 0 UNP Q13MU9 EXPRESSION TAG SEQADV 2OWP MSE B 1 UNP Q13MU9 MET 1 MODIFIED RESIDUE SEQADV 2OWP MSE B 31 UNP Q13MU9 MET 31 MODIFIED RESIDUE SEQADV 2OWP MSE B 103 UNP Q13MU9 MET 103 MODIFIED RESIDUE SEQADV 2OWP MSE B 127 UNP Q13MU9 MET 127 MODIFIED RESIDUE SEQRES 1 A 129 GLY MSE GLU VAL ASN GLN PRO ASP ILE VAL ALA GLN VAL SEQRES 2 A 129 GLN ALA ALA PHE VAL GLU TYR GLU ARG ALA LEU VAL GLU SEQRES 3 A 129 ASN ASP ILE GLU ALA MSE ASN ALA LEU PHE TRP HIS THR SEQRES 4 A 129 PRO GLU THR VAL ARG TYR GLY ILE ALA GLU VAL GLN HIS SEQRES 5 A 129 GLY GLY GLU ALA ILE ARG ALA TRP ARG GLU ARG CYS GLU SEQRES 6 A 129 PRO VAL PRO LYS SER ARG LYS LEU HIS ARG THR VAL VAL SEQRES 7 A 129 THR THR PHE GLY THR ASP PHE ALA THR VAL SER THR GLU SEQRES 8 A 129 PHE THR SER ASP ALA THR PRO LEU LEU GLY ARG GLN MSE SEQRES 9 A 129 GLN THR TRP ALA ARG LEU SER PRO ALA ASP GLY TRP LYS SEQRES 10 A 129 ILE VAL ALA ALA HIS VAL SER LEU ILE ALA MSE PRO SEQRES 1 B 129 GLY MSE GLU VAL ASN GLN PRO ASP ILE VAL ALA GLN VAL SEQRES 2 B 129 GLN ALA ALA PHE VAL GLU TYR GLU ARG ALA LEU VAL GLU SEQRES 3 B 129 ASN ASP ILE GLU ALA MSE ASN ALA LEU PHE TRP HIS THR SEQRES 4 B 129 PRO GLU THR VAL ARG TYR GLY ILE ALA GLU VAL GLN HIS SEQRES 5 B 129 GLY GLY GLU ALA ILE ARG ALA TRP ARG GLU ARG CYS GLU SEQRES 6 B 129 PRO VAL PRO LYS SER ARG LYS LEU HIS ARG THR VAL VAL SEQRES 7 B 129 THR THR PHE GLY THR ASP PHE ALA THR VAL SER THR GLU SEQRES 8 B 129 PHE THR SER ASP ALA THR PRO LEU LEU GLY ARG GLN MSE SEQRES 9 B 129 GLN THR TRP ALA ARG LEU SER PRO ALA ASP GLY TRP LYS SEQRES 10 B 129 ILE VAL ALA ALA HIS VAL SER LEU ILE ALA MSE PRO MODRES 2OWP MSE A 1 MET SELENOMETHIONINE MODRES 2OWP MSE A 31 MET SELENOMETHIONINE MODRES 2OWP MSE A 103 MET SELENOMETHIONINE MODRES 2OWP MSE A 127 MET SELENOMETHIONINE MODRES 2OWP MSE B 1 MET SELENOMETHIONINE MODRES 2OWP MSE B 31 MET SELENOMETHIONINE MODRES 2OWP MSE B 103 MET SELENOMETHIONINE MODRES 2OWP MSE B 127 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 31 8 HET MSE A 103 8 HET MSE A 127 8 HET MSE B 1 8 HET MSE B 31 8 HET MSE B 103 8 HET MSE B 127 8 HET SO4 A 129 5 HET SO4 A 130 5 HET EDO A 131 4 HET EDO A 132 4 HET EDO A 133 4 HET EDO A 134 4 HET EDO A 135 4 HET EDO A 136 4 HET EDO A 137 4 HET EDO A 138 4 HET EDO B 129 4 HET EDO B 130 4 HET EDO B 131 4 HET EDO B 132 4 HET EDO B 133 4 HET EDO B 134 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 EDO 14(C2 H6 O2) FORMUL 19 HOH *297(H2 O) HELIX 1 1 GLN A 5 ASN A 26 1 22 HELIX 2 2 ASP A 27 LEU A 34 1 8 HELIX 3 3 GLY A 52 CYS A 63 1 12 HELIX 4 4 GLN B 5 ASN B 26 1 22 HELIX 5 5 ASP B 27 PHE B 35 1 9 HELIX 6 6 GLY B 52 CYS B 63 1 12 SHEET 1 A 6 VAL A 49 HIS A 51 0 SHEET 2 A 6 VAL A 42 TYR A 44 -1 N ARG A 43 O GLN A 50 SHEET 3 A 6 TRP A 115 ILE A 125 1 O VAL A 122 N TYR A 44 SHEET 4 A 6 THR A 96 ARG A 108 -1 N LEU A 99 O ILE A 125 SHEET 5 A 6 PHE A 84 SER A 93 -1 N PHE A 91 O GLY A 100 SHEET 6 A 6 LYS A 71 PHE A 80 -1 N VAL A 76 O SER A 88 SHEET 1 B 6 VAL B 49 HIS B 51 0 SHEET 2 B 6 VAL B 42 TYR B 44 -1 N ARG B 43 O GLN B 50 SHEET 3 B 6 TRP B 115 ILE B 125 1 O VAL B 122 N TYR B 44 SHEET 4 B 6 THR B 96 ARG B 108 -1 N LEU B 99 O ILE B 125 SHEET 5 B 6 PHE B 84 SER B 93 -1 N PHE B 91 O GLY B 100 SHEET 6 B 6 LYS B 71 PHE B 80 -1 N VAL B 76 O SER B 88 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C ALA A 30 N MSE A 31 1555 1555 1.34 LINK C MSE A 31 N ASN A 32 1555 1555 1.34 LINK C GLN A 102 N MSE A 103 1555 1555 1.34 LINK C MSE A 103 N GLN A 104 1555 1555 1.33 LINK C ALA A 126 N MSE A 127 1555 1555 1.34 LINK C MSE A 127 N PRO A 128 1555 1555 1.35 LINK C GLY B 0 N MSE B 1 1555 1555 1.35 LINK C MSE B 1 N GLU B 2 1555 1555 1.35 LINK C ALA B 30 N MSE B 31 1555 1555 1.34 LINK C MSE B 31 N ASN B 32 1555 1555 1.32 LINK C GLN B 102 N MSE B 103 1555 1555 1.34 LINK C MSE B 103 N GLN B 104 1555 1555 1.34 LINK C ALA B 126 N MSE B 127 1555 1555 1.31 LINK C MSE B 127 N PRO B 128 1555 1555 1.35 SITE 1 AC1 2 HIS A 73 SO4 A 130 SITE 1 AC2 4 HIS A 73 ARG A 74 SO4 A 129 HOH A 228 SITE 1 AC3 5 HOH A 191 GLU B 20 ARG B 70 LYS B 71 SITE 2 AC3 5 LEU B 72 SITE 1 AC4 5 SER A 93 ASP A 94 THR A 96 PRO A 97 SITE 2 AC4 5 LEU B 98 SITE 1 AC5 3 SER B 69 THR B 92 ASP B 94 SITE 1 AC6 5 TRP A 36 GLU A 40 HOH A 173 HOH A 238 SITE 2 AC6 5 VAL B 3 SITE 1 AC7 5 HIS A 37 THR A 38 PRO A 39 GLY A 53 SITE 2 AC7 5 GLU A 54 SITE 1 AC8 4 PRO A 65 VAL A 66 HOH A 214 HOH A 278 SITE 1 AC9 1 GLU A 61 SITE 1 BC1 5 GLU A 20 ARG A 70 LYS A 71 LEU A 72 SITE 2 BC1 5 HOH B 250 SITE 1 BC2 5 THR B 96 LEU B 98 HOH B 243 HOH B 251 SITE 2 BC2 5 HOH B 254 SITE 1 BC3 8 HIS B 37 THR B 38 PRO B 39 GLY B 52 SITE 2 BC3 8 GLY B 53 GLU B 54 HOH B 278 HOH B 281 SITE 1 BC4 7 ASN A 32 PHE A 35 TRP A 36 HIS A 37 SITE 2 BC4 7 ILE A 56 ARG A 57 ARG A 60 SITE 1 BC5 5 ARG A 74 HOH A 195 VAL B 49 HIS B 51 SITE 2 BC5 5 HOH B 233 SITE 1 BC6 3 ARG B 43 ARG B 70 GLN B 102 SITE 1 BC7 5 VAL A 49 HIS A 51 HOH A 286 ARG B 74 SITE 2 BC7 5 HOH B 187 CRYST1 80.518 80.518 116.256 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012420 0.007170 0.000000 0.00000 SCALE2 0.000000 0.014340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008600 0.00000