data_2OXR # _entry.id 2OXR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OXR pdb_00002oxr 10.2210/pdb2oxr/pdb RCSB RCSB041715 ? ? WWPDB D_1000041715 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1YRB 'PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi' unspecified PDB 1YRA 'PAB0955 crystal structure : a GTPase in GDP bound form from Pyrococcus abyssi' unspecified PDB 1YR9 'PAB0955 crystal structure : a GTPase in GDP and PO4 bound form from Pyrococcus abyssi' unspecified PDB 1YR8 'PAB0955 crystal structure : a GTPase in GTP bound form from Pyrococcus abyssi' unspecified PDB 1YR7 'PAB0955 crystal structure : a GTPase in GTP-gamma-S bound form from Pyrococcus abyssi' unspecified PDB 1YR6 'PAB0955 crystal structure : a GTPase in Apo form from Pyrococcus abyssi' unspecified # _pdbx_database_status.entry_id 2OXR _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-02-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gras, S.' 1 'Carpentier, P.' 2 'Armengaud, J.' 3 'Housset, D.' 4 # _citation.id primary _citation.title 'Structural insights into a new homodimeric self-activated GTPase family.' _citation.journal_abbrev 'Embo Rep.' _citation.journal_volume 8 _citation.page_first 569 _citation.page_last 575 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1469-221X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17468740 _citation.pdbx_database_id_DOI 10.1038/sj.embor.7400958 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gras, S.' 1 ? primary 'Chaumont, V.' 2 ? primary 'Fernandez, B.' 3 ? primary 'Carpentier, P.' 4 ? primary 'Charrier-Savournin, F.' 5 ? primary 'Schmitt, S.' 6 ? primary 'Pineau, C.' 7 ? primary 'Flament, D.' 8 ? primary 'Hecker, A.' 9 ? primary 'Forterre, P.' 10 ? primary 'Armengaud, J.' 11 ? primary 'Housset, D.' 12 ? # _cell.entry_id 2OXR _cell.length_a 60.189 _cell.length_b 60.189 _cell.length_c 116.512 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OXR _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP(GTP)binding protein' 30334.795 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 4 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGP NGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR FFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT REGFEDLETLAYEHYCTCGDLT ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGP NGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVR FFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT REGFEDLETLAYEHYCTCGDLT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 MET n 1 13 ALA n 1 14 SER n 1 15 MET n 1 16 ILE n 1 17 VAL n 1 18 VAL n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 THR n 1 23 ALA n 1 24 GLY n 1 25 SER n 1 26 GLY n 1 27 LYS n 1 28 THR n 1 29 THR n 1 30 LEU n 1 31 THR n 1 32 GLY n 1 33 GLU n 1 34 PHE n 1 35 GLY n 1 36 ARG n 1 37 TYR n 1 38 LEU n 1 39 GLU n 1 40 ASP n 1 41 ASN n 1 42 TYR n 1 43 LYS n 1 44 VAL n 1 45 ALA n 1 46 TYR n 1 47 VAL n 1 48 ASN n 1 49 LEU n 1 50 ASP n 1 51 THR n 1 52 GLY n 1 53 VAL n 1 54 LYS n 1 55 GLU n 1 56 LEU n 1 57 PRO n 1 58 TYR n 1 59 GLU n 1 60 PRO n 1 61 SER n 1 62 ILE n 1 63 ASP n 1 64 VAL n 1 65 ARG n 1 66 GLU n 1 67 PHE n 1 68 VAL n 1 69 THR n 1 70 VAL n 1 71 GLU n 1 72 GLU n 1 73 ILE n 1 74 MET n 1 75 ARG n 1 76 GLU n 1 77 GLY n 1 78 TYR n 1 79 GLY n 1 80 PRO n 1 81 ASN n 1 82 GLY n 1 83 ALA n 1 84 ILE n 1 85 VAL n 1 86 GLU n 1 87 SER n 1 88 TYR n 1 89 ASP n 1 90 ARG n 1 91 LEU n 1 92 MET n 1 93 GLU n 1 94 LYS n 1 95 PHE n 1 96 ASN n 1 97 GLU n 1 98 TYR n 1 99 LEU n 1 100 ASN n 1 101 LYS n 1 102 ILE n 1 103 LEU n 1 104 ARG n 1 105 LEU n 1 106 GLU n 1 107 LYS n 1 108 GLU n 1 109 ASN n 1 110 ASP n 1 111 TYR n 1 112 VAL n 1 113 LEU n 1 114 ILE n 1 115 ASP n 1 116 THR n 1 117 PRO n 1 118 GLY n 1 119 GLN n 1 120 MET n 1 121 GLU n 1 122 THR n 1 123 PHE n 1 124 LEU n 1 125 PHE n 1 126 HIS n 1 127 GLU n 1 128 PHE n 1 129 GLY n 1 130 VAL n 1 131 ARG n 1 132 LEU n 1 133 MET n 1 134 GLU n 1 135 ASN n 1 136 LEU n 1 137 PRO n 1 138 TYR n 1 139 PRO n 1 140 LEU n 1 141 VAL n 1 142 VAL n 1 143 TYR n 1 144 ILE n 1 145 SER n 1 146 ASP n 1 147 PRO n 1 148 GLU n 1 149 ILE n 1 150 LEU n 1 151 LYS n 1 152 LYS n 1 153 PRO n 1 154 ASN n 1 155 ASP n 1 156 TYR n 1 157 CYS n 1 158 PHE n 1 159 VAL n 1 160 ARG n 1 161 PHE n 1 162 PHE n 1 163 ALA n 1 164 LEU n 1 165 LEU n 1 166 ILE n 1 167 ASP n 1 168 LEU n 1 169 ARG n 1 170 LEU n 1 171 GLY n 1 172 ALA n 1 173 THR n 1 174 THR n 1 175 ILE n 1 176 PRO n 1 177 ALA n 1 178 LEU n 1 179 ASN n 1 180 LYS n 1 181 VAL n 1 182 ASP n 1 183 LEU n 1 184 LEU n 1 185 SER n 1 186 GLU n 1 187 GLU n 1 188 GLU n 1 189 LYS n 1 190 GLU n 1 191 ARG n 1 192 HIS n 1 193 ARG n 1 194 LYS n 1 195 TYR n 1 196 PHE n 1 197 GLU n 1 198 ASP n 1 199 ILE n 1 200 ASP n 1 201 TYR n 1 202 LEU n 1 203 THR n 1 204 ALA n 1 205 ARG n 1 206 LEU n 1 207 LYS n 1 208 LEU n 1 209 ASP n 1 210 PRO n 1 211 SER n 1 212 MET n 1 213 GLN n 1 214 GLY n 1 215 LEU n 1 216 MET n 1 217 ALA n 1 218 TYR n 1 219 LYS n 1 220 MET n 1 221 CYS n 1 222 SER n 1 223 MET n 1 224 MET n 1 225 THR n 1 226 GLU n 1 227 VAL n 1 228 LEU n 1 229 PRO n 1 230 PRO n 1 231 VAL n 1 232 ARG n 1 233 VAL n 1 234 LEU n 1 235 TYR n 1 236 LEU n 1 237 SER n 1 238 ALA n 1 239 LYS n 1 240 THR n 1 241 ARG n 1 242 GLU n 1 243 GLY n 1 244 PHE n 1 245 GLU n 1 246 ASP n 1 247 LEU n 1 248 GLU n 1 249 THR n 1 250 LEU n 1 251 ALA n 1 252 TYR n 1 253 GLU n 1 254 HIS n 1 255 TYR n 1 256 CYS n 1 257 THR n 1 258 CYS n 1 259 GLY n 1 260 ASP n 1 261 LEU n 1 262 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene pab0955 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus abyssi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 29292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)pLys' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCRT7/NT-topo _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9UYR9_PYRAB _struct_ref.pdbx_db_accession Q9UYR9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEK FNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATT IPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH YCTCGDLT ; _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2OXR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 15 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UYR9 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 277 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 248 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OXR MET A 1 ? UNP Q9UYR9 ? ? 'cloning artifact' 487 1 1 2OXR ARG A 2 ? UNP Q9UYR9 ? ? 'cloning artifact' 488 2 1 2OXR GLY A 3 ? UNP Q9UYR9 ? ? 'cloning artifact' 489 3 1 2OXR SER A 4 ? UNP Q9UYR9 ? ? 'cloning artifact' 490 4 1 2OXR HIS A 5 ? UNP Q9UYR9 ? ? 'expression tag' 491 5 1 2OXR HIS A 6 ? UNP Q9UYR9 ? ? 'expression tag' 492 6 1 2OXR HIS A 7 ? UNP Q9UYR9 ? ? 'expression tag' 493 7 1 2OXR HIS A 8 ? UNP Q9UYR9 ? ? 'expression tag' 494 8 1 2OXR HIS A 9 ? UNP Q9UYR9 ? ? 'expression tag' 495 9 1 2OXR HIS A 10 ? UNP Q9UYR9 ? ? 'expression tag' 496 10 1 2OXR GLY A 11 ? UNP Q9UYR9 ? ? 'cloning artifact' 497 11 1 2OXR MET A 12 ? UNP Q9UYR9 ? ? 'cloning artifact' 498 12 1 2OXR ALA A 13 ? UNP Q9UYR9 ? ? 'cloning artifact' 499 13 1 2OXR SER A 14 ? UNP Q9UYR9 ? ? 'cloning artifact' 500 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2OXR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 38.731400 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.60 _exptl_crystal_grow.pdbx_details ;0.1M tri-Na citrate pH 5.6, 15% PEG 4000, 0.2M ammonium acetate, 20mM DTT, 0.65mM GTP, 8mg/ml protein, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 5.60 ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.pdbx_collection_date 2004-02-26 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2OXR _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100.000 _reflns.d_resolution_high 2.400 _reflns.number_obs 9973 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06700 _reflns.pdbx_netI_over_sigmaI 19.5500 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.300 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.45 _reflns_shell.percent_possible_all 98.8 _reflns_shell.Rmerge_I_obs 0.40400 _reflns_shell.pdbx_Rsym_value 0.40400 _reflns_shell.meanI_over_sigI_obs 5.760 _reflns_shell.pdbx_redundancy 9.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2OXR _refine.ls_number_reflns_obs 9913 _refine.ls_number_reflns_all 10300 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.23 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.324 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.90 _refine.ls_number_reflns_R_free 981 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9275 _refine.correlation_coeff_Fo_to_Fc_free 0.8750 _refine.B_iso_mean 50.15 _refine.aniso_B[1][1] 2.39000 _refine.aniso_B[2][2] 2.39000 _refine.aniso_B[3][3] -3.58000 _refine.aniso_B[1][2] 1.19000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 1YRB _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.617 _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 2086 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 2081 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.190 2.012 ? 2821 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.467 5.000 ? 245 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.452 24.082 ? 98 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.699 15.000 ? 373 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.114 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.074 0.200 ? 312 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1555 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.270 0.300 ? 883 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.332 0.500 ? 1356 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.292 0.500 ? 144 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.333 0.300 ? 57 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.377 0.500 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.960 2.000 ? 1227 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.685 3.000 ? 1996 'X-RAY DIFFRACTION' ? r_scbond_it 1.220 3.000 ? 854 'X-RAY DIFFRACTION' ? r_scangle_it 1.744 4.000 ? 825 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.48 _refine_ls_shell.number_reflns_R_work 858 _refine_ls_shell.R_factor_R_work 0.200 _refine_ls_shell.percent_reflns_obs 98.85 _refine_ls_shell.R_factor_R_free 0.390 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 85 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OXR _struct.title 'PAB0955 crystal structure : a GTPase in GDP and Mg bound form from Pyrococcus abyssi (after GTP hydrolysis)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OXR _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'hydrolase, GTP binding protein, GTPase, P-loop, Rossmann fold, GDP' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 26 ? GLU A 39 ? GLY A 12 GLU A 25 1 ? 14 HELX_P HELX_P2 2 ARG A 65 ? PHE A 67 ? ARG A 51 PHE A 53 5 ? 3 HELX_P HELX_P3 3 THR A 69 ? ARG A 75 ? THR A 55 ARG A 61 1 ? 7 HELX_P HELX_P4 4 GLY A 79 ? MET A 92 ? GLY A 65 MET A 78 1 ? 14 HELX_P HELX_P5 5 LYS A 94 ? GLU A 106 ? LYS A 80 GLU A 92 1 ? 13 HELX_P HELX_P6 6 GLN A 119 ? HIS A 126 ? GLN A 105 HIS A 112 1 ? 8 HELX_P HELX_P7 7 HIS A 126 ? ASN A 135 ? HIS A 112 ASN A 121 1 ? 10 HELX_P HELX_P8 8 ASP A 146 ? LEU A 150 ? ASP A 132 LEU A 136 5 ? 5 HELX_P HELX_P9 9 LYS A 152 ? GLY A 171 ? LYS A 138 GLY A 157 1 ? 20 HELX_P HELX_P10 10 LYS A 180 ? LEU A 184 ? LYS A 166 LEU A 170 5 ? 5 HELX_P HELX_P11 11 GLU A 186 ? ASP A 198 ? GLU A 172 ASP A 184 1 ? 13 HELX_P HELX_P12 12 ASP A 198 ? LYS A 207 ? ASP A 184 LYS A 193 1 ? 10 HELX_P HELX_P13 13 SER A 211 ? MET A 216 ? SER A 197 MET A 202 1 ? 6 HELX_P HELX_P14 14 GLY A 243 ? THR A 257 ? GLY A 229 THR A 243 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 157 SG ? ? ? 1_555 A CYS 221 SG ? ? A CYS 143 A CYS 207 1_555 ? ? ? ? ? ? ? 2.997 ? ? metalc1 metalc ? ? A THR 28 OG1 ? ? ? 1_555 B MG . MG ? ? A THR 14 A MG 501 1_555 ? ? ? ? ? ? ? 2.325 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 C GDP . O1B ? ? A MG 501 A GDP 502 1_555 ? ? ? ? ? ? ? 3.115 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C GDP . O3B ? ? A MG 501 A GDP 502 1_555 ? ? ? ? ? ? ? 2.779 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 501 A HOH 505 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 501 A HOH 554 1_555 ? ? ? ? ? ? ? 2.855 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 62 ? ASP A 63 ? ILE A 48 ASP A 49 A 2 VAL A 44 ? ASN A 48 ? VAL A 30 ASN A 34 A 3 TYR A 111 ? ASP A 115 ? TYR A 97 ASP A 101 A 4 MET A 15 ? VAL A 20 ? MET A 1 VAL A 6 A 5 LEU A 140 ? SER A 145 ? LEU A 126 SER A 131 A 6 THR A 174 ? LEU A 178 ? THR A 160 LEU A 164 A 7 LEU A 234 ? TYR A 235 ? LEU A 220 TYR A 221 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 62 ? O ILE A 48 N ASN A 48 ? N ASN A 34 A 2 3 N ALA A 45 ? N ALA A 31 O TYR A 111 ? O TYR A 97 A 3 4 O ILE A 114 ? O ILE A 100 N VAL A 17 ? N VAL A 3 A 4 5 N VAL A 20 ? N VAL A 6 O VAL A 142 ? O VAL A 128 A 5 6 N VAL A 141 ? N VAL A 127 O ILE A 175 ? O ILE A 161 A 6 7 N LEU A 178 ? N LEU A 164 O LEU A 234 ? O LEU A 220 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 501 ? 5 'BINDING SITE FOR RESIDUE MG A 501' AC2 Software A GDP 502 ? 15 'BINDING SITE FOR RESIDUE GDP A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 28 ? THR A 14 . ? 1_555 ? 2 AC1 5 VAL A 53 ? VAL A 39 . ? 1_555 ? 3 AC1 5 GDP C . ? GDP A 502 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 505 . ? 1_555 ? 5 AC1 5 HOH D . ? HOH A 554 . ? 1_555 ? 6 AC2 15 SER A 25 ? SER A 11 . ? 1_555 ? 7 AC2 15 GLY A 26 ? GLY A 12 . ? 1_555 ? 8 AC2 15 LYS A 27 ? LYS A 13 . ? 1_555 ? 9 AC2 15 THR A 28 ? THR A 14 . ? 1_555 ? 10 AC2 15 THR A 29 ? THR A 15 . ? 1_555 ? 11 AC2 15 ASN A 179 ? ASN A 165 . ? 1_555 ? 12 AC2 15 LYS A 180 ? LYS A 166 . ? 1_555 ? 13 AC2 15 ASP A 182 ? ASP A 168 . ? 1_555 ? 14 AC2 15 LEU A 183 ? LEU A 169 . ? 1_555 ? 15 AC2 15 SER A 237 ? SER A 223 . ? 1_555 ? 16 AC2 15 ALA A 238 ? ALA A 224 . ? 1_555 ? 17 AC2 15 LYS A 239 ? LYS A 225 . ? 1_555 ? 18 AC2 15 MG B . ? MG A 501 . ? 1_555 ? 19 AC2 15 HOH D . ? HOH A 505 . ? 1_555 ? 20 AC2 15 HOH D . ? HOH A 533 . ? 1_555 ? # _atom_sites.entry_id 2OXR _atom_sites.fract_transf_matrix[1][1] 0.016614 _atom_sites.fract_transf_matrix[1][2] 0.009592 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019185 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008583 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 487 ? ? ? A . n A 1 2 ARG 2 488 ? ? ? A . n A 1 3 GLY 3 489 ? ? ? A . n A 1 4 SER 4 490 ? ? ? A . n A 1 5 HIS 5 491 ? ? ? A . n A 1 6 HIS 6 492 ? ? ? A . n A 1 7 HIS 7 493 ? ? ? A . n A 1 8 HIS 8 494 ? ? ? A . n A 1 9 HIS 9 495 ? ? ? A . n A 1 10 HIS 10 496 ? ? ? A . n A 1 11 GLY 11 497 ? ? ? A . n A 1 12 MET 12 498 498 MET MET A . n A 1 13 ALA 13 499 499 ALA ALA A . n A 1 14 SER 14 500 500 SER SER A . n A 1 15 MET 15 1 1 MET MET A . n A 1 16 ILE 16 2 2 ILE ILE A . n A 1 17 VAL 17 3 3 VAL VAL A . n A 1 18 VAL 18 4 4 VAL VAL A . n A 1 19 PHE 19 5 5 PHE PHE A . n A 1 20 VAL 20 6 6 VAL VAL A . n A 1 21 GLY 21 7 7 GLY GLY A . n A 1 22 THR 22 8 8 THR THR A . n A 1 23 ALA 23 9 9 ALA ALA A . n A 1 24 GLY 24 10 10 GLY GLY A . n A 1 25 SER 25 11 11 SER SER A . n A 1 26 GLY 26 12 12 GLY GLY A . n A 1 27 LYS 27 13 13 LYS LYS A . n A 1 28 THR 28 14 14 THR THR A . n A 1 29 THR 29 15 15 THR THR A . n A 1 30 LEU 30 16 16 LEU LEU A . n A 1 31 THR 31 17 17 THR THR A . n A 1 32 GLY 32 18 18 GLY GLY A . n A 1 33 GLU 33 19 19 GLU GLU A . n A 1 34 PHE 34 20 20 PHE PHE A . n A 1 35 GLY 35 21 21 GLY GLY A . n A 1 36 ARG 36 22 22 ARG ARG A . n A 1 37 TYR 37 23 23 TYR TYR A . n A 1 38 LEU 38 24 24 LEU LEU A . n A 1 39 GLU 39 25 25 GLU GLU A . n A 1 40 ASP 40 26 26 ASP ASP A . n A 1 41 ASN 41 27 27 ASN ASN A . n A 1 42 TYR 42 28 28 TYR TYR A . n A 1 43 LYS 43 29 29 LYS LYS A . n A 1 44 VAL 44 30 30 VAL VAL A . n A 1 45 ALA 45 31 31 ALA ALA A . n A 1 46 TYR 46 32 32 TYR TYR A . n A 1 47 VAL 47 33 33 VAL VAL A . n A 1 48 ASN 48 34 34 ASN ASN A . n A 1 49 LEU 49 35 35 LEU LEU A . n A 1 50 ASP 50 36 36 ASP ASP A . n A 1 51 THR 51 37 37 THR THR A . n A 1 52 GLY 52 38 38 GLY GLY A . n A 1 53 VAL 53 39 39 VAL VAL A . n A 1 54 LYS 54 40 40 LYS LYS A . n A 1 55 GLU 55 41 41 GLU GLU A . n A 1 56 LEU 56 42 42 LEU LEU A . n A 1 57 PRO 57 43 43 PRO PRO A . n A 1 58 TYR 58 44 44 TYR TYR A . n A 1 59 GLU 59 45 45 GLU GLU A . n A 1 60 PRO 60 46 46 PRO PRO A . n A 1 61 SER 61 47 47 SER SER A . n A 1 62 ILE 62 48 48 ILE ILE A . n A 1 63 ASP 63 49 49 ASP ASP A . n A 1 64 VAL 64 50 50 VAL VAL A . n A 1 65 ARG 65 51 51 ARG ARG A . n A 1 66 GLU 66 52 52 GLU GLU A . n A 1 67 PHE 67 53 53 PHE PHE A . n A 1 68 VAL 68 54 54 VAL VAL A . n A 1 69 THR 69 55 55 THR THR A . n A 1 70 VAL 70 56 56 VAL VAL A . n A 1 71 GLU 71 57 57 GLU GLU A . n A 1 72 GLU 72 58 58 GLU GLU A . n A 1 73 ILE 73 59 59 ILE ILE A . n A 1 74 MET 74 60 60 MET MET A . n A 1 75 ARG 75 61 61 ARG ARG A . n A 1 76 GLU 76 62 62 GLU GLU A . n A 1 77 GLY 77 63 63 GLY GLY A . n A 1 78 TYR 78 64 64 TYR TYR A . n A 1 79 GLY 79 65 65 GLY GLY A . n A 1 80 PRO 80 66 66 PRO PRO A . n A 1 81 ASN 81 67 67 ASN ASN A . n A 1 82 GLY 82 68 68 GLY GLY A . n A 1 83 ALA 83 69 69 ALA ALA A . n A 1 84 ILE 84 70 70 ILE ILE A . n A 1 85 VAL 85 71 71 VAL VAL A . n A 1 86 GLU 86 72 72 GLU GLU A . n A 1 87 SER 87 73 73 SER SER A . n A 1 88 TYR 88 74 74 TYR TYR A . n A 1 89 ASP 89 75 75 ASP ASP A . n A 1 90 ARG 90 76 76 ARG ARG A . n A 1 91 LEU 91 77 77 LEU LEU A . n A 1 92 MET 92 78 78 MET MET A . n A 1 93 GLU 93 79 79 GLU GLU A . n A 1 94 LYS 94 80 80 LYS LYS A . n A 1 95 PHE 95 81 81 PHE PHE A . n A 1 96 ASN 96 82 82 ASN ASN A . n A 1 97 GLU 97 83 83 GLU GLU A . n A 1 98 TYR 98 84 84 TYR TYR A . n A 1 99 LEU 99 85 85 LEU LEU A . n A 1 100 ASN 100 86 86 ASN ASN A . n A 1 101 LYS 101 87 87 LYS LYS A . n A 1 102 ILE 102 88 88 ILE ILE A . n A 1 103 LEU 103 89 89 LEU LEU A . n A 1 104 ARG 104 90 90 ARG ARG A . n A 1 105 LEU 105 91 91 LEU LEU A . n A 1 106 GLU 106 92 92 GLU GLU A . n A 1 107 LYS 107 93 93 LYS LYS A . n A 1 108 GLU 108 94 94 GLU GLU A . n A 1 109 ASN 109 95 95 ASN ASN A . n A 1 110 ASP 110 96 96 ASP ASP A . n A 1 111 TYR 111 97 97 TYR TYR A . n A 1 112 VAL 112 98 98 VAL VAL A . n A 1 113 LEU 113 99 99 LEU LEU A . n A 1 114 ILE 114 100 100 ILE ILE A . n A 1 115 ASP 115 101 101 ASP ASP A . n A 1 116 THR 116 102 102 THR THR A . n A 1 117 PRO 117 103 103 PRO PRO A . n A 1 118 GLY 118 104 104 GLY GLY A . n A 1 119 GLN 119 105 105 GLN GLN A . n A 1 120 MET 120 106 106 MET MET A . n A 1 121 GLU 121 107 107 GLU GLU A . n A 1 122 THR 122 108 108 THR THR A . n A 1 123 PHE 123 109 109 PHE PHE A . n A 1 124 LEU 124 110 110 LEU LEU A . n A 1 125 PHE 125 111 111 PHE PHE A . n A 1 126 HIS 126 112 112 HIS HIS A . n A 1 127 GLU 127 113 113 GLU GLU A . n A 1 128 PHE 128 114 114 PHE PHE A . n A 1 129 GLY 129 115 115 GLY GLY A . n A 1 130 VAL 130 116 116 VAL VAL A . n A 1 131 ARG 131 117 117 ARG ARG A . n A 1 132 LEU 132 118 118 LEU LEU A . n A 1 133 MET 133 119 119 MET MET A . n A 1 134 GLU 134 120 120 GLU GLU A . n A 1 135 ASN 135 121 121 ASN ASN A . n A 1 136 LEU 136 122 122 LEU LEU A . n A 1 137 PRO 137 123 123 PRO PRO A . n A 1 138 TYR 138 124 124 TYR TYR A . n A 1 139 PRO 139 125 125 PRO PRO A . n A 1 140 LEU 140 126 126 LEU LEU A . n A 1 141 VAL 141 127 127 VAL VAL A . n A 1 142 VAL 142 128 128 VAL VAL A . n A 1 143 TYR 143 129 129 TYR TYR A . n A 1 144 ILE 144 130 130 ILE ILE A . n A 1 145 SER 145 131 131 SER SER A . n A 1 146 ASP 146 132 132 ASP ASP A . n A 1 147 PRO 147 133 133 PRO PRO A . n A 1 148 GLU 148 134 134 GLU GLU A . n A 1 149 ILE 149 135 135 ILE ILE A . n A 1 150 LEU 150 136 136 LEU LEU A . n A 1 151 LYS 151 137 137 LYS LYS A . n A 1 152 LYS 152 138 138 LYS LYS A . n A 1 153 PRO 153 139 139 PRO PRO A . n A 1 154 ASN 154 140 140 ASN ASN A . n A 1 155 ASP 155 141 141 ASP ASP A . n A 1 156 TYR 156 142 142 TYR TYR A . n A 1 157 CYS 157 143 143 CYS CYS A . n A 1 158 PHE 158 144 144 PHE PHE A . n A 1 159 VAL 159 145 145 VAL VAL A . n A 1 160 ARG 160 146 146 ARG ARG A . n A 1 161 PHE 161 147 147 PHE PHE A . n A 1 162 PHE 162 148 148 PHE PHE A . n A 1 163 ALA 163 149 149 ALA ALA A . n A 1 164 LEU 164 150 150 LEU LEU A . n A 1 165 LEU 165 151 151 LEU LEU A . n A 1 166 ILE 166 152 152 ILE ILE A . n A 1 167 ASP 167 153 153 ASP ASP A . n A 1 168 LEU 168 154 154 LEU LEU A . n A 1 169 ARG 169 155 155 ARG ARG A . n A 1 170 LEU 170 156 156 LEU LEU A . n A 1 171 GLY 171 157 157 GLY GLY A . n A 1 172 ALA 172 158 158 ALA ALA A . n A 1 173 THR 173 159 159 THR THR A . n A 1 174 THR 174 160 160 THR THR A . n A 1 175 ILE 175 161 161 ILE ILE A . n A 1 176 PRO 176 162 162 PRO PRO A . n A 1 177 ALA 177 163 163 ALA ALA A . n A 1 178 LEU 178 164 164 LEU LEU A . n A 1 179 ASN 179 165 165 ASN ASN A . n A 1 180 LYS 180 166 166 LYS LYS A . n A 1 181 VAL 181 167 167 VAL VAL A . n A 1 182 ASP 182 168 168 ASP ASP A . n A 1 183 LEU 183 169 169 LEU LEU A . n A 1 184 LEU 184 170 170 LEU LEU A . n A 1 185 SER 185 171 171 SER SER A . n A 1 186 GLU 186 172 172 GLU GLU A . n A 1 187 GLU 187 173 173 GLU GLU A . n A 1 188 GLU 188 174 174 GLU GLU A . n A 1 189 LYS 189 175 175 LYS LYS A . n A 1 190 GLU 190 176 176 GLU GLU A . n A 1 191 ARG 191 177 177 ARG ARG A . n A 1 192 HIS 192 178 178 HIS HIS A . n A 1 193 ARG 193 179 179 ARG ARG A . n A 1 194 LYS 194 180 180 LYS LYS A . n A 1 195 TYR 195 181 181 TYR TYR A . n A 1 196 PHE 196 182 182 PHE PHE A . n A 1 197 GLU 197 183 183 GLU GLU A . n A 1 198 ASP 198 184 184 ASP ASP A . n A 1 199 ILE 199 185 185 ILE ILE A . n A 1 200 ASP 200 186 186 ASP ASP A . n A 1 201 TYR 201 187 187 TYR TYR A . n A 1 202 LEU 202 188 188 LEU LEU A . n A 1 203 THR 203 189 189 THR THR A . n A 1 204 ALA 204 190 190 ALA ALA A . n A 1 205 ARG 205 191 191 ARG ARG A . n A 1 206 LEU 206 192 192 LEU LEU A . n A 1 207 LYS 207 193 193 LYS LYS A . n A 1 208 LEU 208 194 194 LEU LEU A . n A 1 209 ASP 209 195 195 ASP ASP A . n A 1 210 PRO 210 196 196 PRO PRO A . n A 1 211 SER 211 197 197 SER SER A . n A 1 212 MET 212 198 198 MET MET A . n A 1 213 GLN 213 199 199 GLN GLN A . n A 1 214 GLY 214 200 200 GLY GLY A . n A 1 215 LEU 215 201 201 LEU LEU A . n A 1 216 MET 216 202 202 MET MET A . n A 1 217 ALA 217 203 203 ALA ALA A . n A 1 218 TYR 218 204 204 TYR TYR A . n A 1 219 LYS 219 205 205 LYS LYS A . n A 1 220 MET 220 206 206 MET MET A . n A 1 221 CYS 221 207 207 CYS CYS A . n A 1 222 SER 222 208 208 SER SER A . n A 1 223 MET 223 209 209 MET MET A . n A 1 224 MET 224 210 210 MET MET A . n A 1 225 THR 225 211 211 THR THR A . n A 1 226 GLU 226 212 212 GLU GLU A . n A 1 227 VAL 227 213 213 VAL VAL A . n A 1 228 LEU 228 214 214 LEU LEU A . n A 1 229 PRO 229 215 215 PRO PRO A . n A 1 230 PRO 230 216 216 PRO PRO A . n A 1 231 VAL 231 217 217 VAL VAL A . n A 1 232 ARG 232 218 218 ARG ARG A . n A 1 233 VAL 233 219 219 VAL VAL A . n A 1 234 LEU 234 220 220 LEU LEU A . n A 1 235 TYR 235 221 221 TYR TYR A . n A 1 236 LEU 236 222 222 LEU LEU A . n A 1 237 SER 237 223 223 SER SER A . n A 1 238 ALA 238 224 224 ALA ALA A . n A 1 239 LYS 239 225 225 LYS LYS A . n A 1 240 THR 240 226 226 THR THR A . n A 1 241 ARG 241 227 227 ARG ARG A . n A 1 242 GLU 242 228 228 GLU GLU A . n A 1 243 GLY 243 229 229 GLY GLY A . n A 1 244 PHE 244 230 230 PHE PHE A . n A 1 245 GLU 245 231 231 GLU GLU A . n A 1 246 ASP 246 232 232 ASP ASP A . n A 1 247 LEU 247 233 233 LEU LEU A . n A 1 248 GLU 248 234 234 GLU GLU A . n A 1 249 THR 249 235 235 THR THR A . n A 1 250 LEU 250 236 236 LEU LEU A . n A 1 251 ALA 251 237 237 ALA ALA A . n A 1 252 TYR 252 238 238 TYR TYR A . n A 1 253 GLU 253 239 239 GLU GLU A . n A 1 254 HIS 254 240 240 HIS HIS A . n A 1 255 TYR 255 241 241 TYR TYR A . n A 1 256 CYS 256 242 242 CYS CYS A . n A 1 257 THR 257 243 243 THR THR A . n A 1 258 CYS 258 244 ? ? ? A . n A 1 259 GLY 259 245 ? ? ? A . n A 1 260 ASP 260 246 ? ? ? A . n A 1 261 LEU 261 247 ? ? ? A . n A 1 262 THR 262 248 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 501 1 MG MG A . C 3 GDP 1 502 2 GDP GDP A . D 4 HOH 1 503 101 HOH HOH A . D 4 HOH 2 504 102 HOH HOH A . D 4 HOH 3 505 103 HOH HOH A . D 4 HOH 4 506 104 HOH HOH A . D 4 HOH 5 507 105 HOH HOH A . D 4 HOH 6 508 106 HOH HOH A . D 4 HOH 7 509 107 HOH HOH A . D 4 HOH 8 510 108 HOH HOH A . D 4 HOH 9 511 109 HOH HOH A . D 4 HOH 10 512 110 HOH HOH A . D 4 HOH 11 513 111 HOH HOH A . D 4 HOH 12 514 112 HOH HOH A . D 4 HOH 13 515 113 HOH HOH A . D 4 HOH 14 516 114 HOH HOH A . D 4 HOH 15 517 115 HOH HOH A . D 4 HOH 16 518 116 HOH HOH A . D 4 HOH 17 519 117 HOH HOH A . D 4 HOH 18 520 118 HOH HOH A . D 4 HOH 19 521 119 HOH HOH A . D 4 HOH 20 522 120 HOH HOH A . D 4 HOH 21 523 121 HOH HOH A . D 4 HOH 22 524 122 HOH HOH A . D 4 HOH 23 525 123 HOH HOH A . D 4 HOH 24 526 124 HOH HOH A . D 4 HOH 25 527 125 HOH HOH A . D 4 HOH 26 528 126 HOH HOH A . D 4 HOH 27 529 127 HOH HOH A . D 4 HOH 28 530 128 HOH HOH A . D 4 HOH 29 531 129 HOH HOH A . D 4 HOH 30 532 130 HOH HOH A . D 4 HOH 31 533 131 HOH HOH A . D 4 HOH 32 534 132 HOH HOH A . D 4 HOH 33 535 133 HOH HOH A . D 4 HOH 34 536 134 HOH HOH A . D 4 HOH 35 537 135 HOH HOH A . D 4 HOH 36 538 136 HOH HOH A . D 4 HOH 37 539 137 HOH HOH A . D 4 HOH 38 540 138 HOH HOH A . D 4 HOH 39 541 139 HOH HOH A . D 4 HOH 40 542 140 HOH HOH A . D 4 HOH 41 543 141 HOH HOH A . D 4 HOH 42 544 142 HOH HOH A . D 4 HOH 43 545 143 HOH HOH A . D 4 HOH 44 546 144 HOH HOH A . D 4 HOH 45 547 145 HOH HOH A . D 4 HOH 46 548 146 HOH HOH A . D 4 HOH 47 549 147 HOH HOH A . D 4 HOH 48 550 148 HOH HOH A . D 4 HOH 49 551 149 HOH HOH A . D 4 HOH 50 552 150 HOH HOH A . D 4 HOH 51 553 151 HOH HOH A . D 4 HOH 52 554 152 HOH HOH A . D 4 HOH 53 555 153 HOH HOH A . D 4 HOH 54 556 154 HOH HOH A . D 4 HOH 55 557 155 HOH HOH A . D 4 HOH 56 558 156 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6010 ? 1 MORE -62 ? 1 'SSA (A^2)' 20930 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 116.5120000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG1 ? A THR 28 ? A THR 14 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O1B ? C GDP . ? A GDP 502 ? 1_555 110.8 ? 2 OG1 ? A THR 28 ? A THR 14 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O3B ? C GDP . ? A GDP 502 ? 1_555 63.4 ? 3 O1B ? C GDP . ? A GDP 502 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O3B ? C GDP . ? A GDP 502 ? 1_555 49.3 ? 4 OG1 ? A THR 28 ? A THR 14 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 505 ? 1_555 115.1 ? 5 O1B ? C GDP . ? A GDP 502 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 505 ? 1_555 43.3 ? 6 O3B ? C GDP . ? A GDP 502 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 505 ? 1_555 78.2 ? 7 OG1 ? A THR 28 ? A THR 14 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 554 ? 1_555 77.5 ? 8 O1B ? C GDP . ? A GDP 502 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 554 ? 1_555 96.3 ? 9 O3B ? C GDP . ? A GDP 502 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 554 ? 1_555 98.2 ? 10 O ? D HOH . ? A HOH 505 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 554 ? 1_555 57.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-11-12 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Structure summary' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.value' 14 5 'Structure model' '_struct_conn.pdbx_dist_value' 15 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 5 'Structure model' '_struct_ref_seq_dif.details' 21 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 XDS . ? ? ? ? 'data reduction' ? ? ? 3 XDS . ? ? ? ? 'data scaling' ? ? ? 4 AMoRE . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1B A GDP 502 ? ? O A HOH 533 ? ? 1.87 2 1 O A GLU 45 ? ? O A HOH 550 ? ? 2.00 3 1 OG A SER 131 ? ? O A HOH 503 ? ? 2.11 4 1 SG A CYS 242 ? ? O A HOH 517 ? ? 2.13 5 1 O1B A GDP 502 ? ? O A HOH 505 ? ? 2.14 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 531 ? ? 1_555 O A HOH 531 ? ? 6_765 1.86 2 1 OE1 A GLN 105 ? ? 1_555 O A HOH 529 ? ? 4_556 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 500 ? ? 46.60 73.36 2 1 GLU A 25 ? ? -63.31 4.45 3 1 ARG A 61 ? ? -69.49 19.11 4 1 VAL A 167 ? ? -57.19 -9.88 5 1 GLU A 172 ? ? 104.84 -27.12 6 1 ALA A 203 ? ? 162.83 -1.88 7 1 CYS A 207 ? ? -64.44 26.60 8 1 SER A 208 ? ? -49.75 93.45 9 1 MET A 210 ? ? -49.14 18.39 10 1 GLU A 212 ? ? 64.18 -145.11 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 487 ? A MET 1 2 1 Y 1 A ARG 488 ? A ARG 2 3 1 Y 1 A GLY 489 ? A GLY 3 4 1 Y 1 A SER 490 ? A SER 4 5 1 Y 1 A HIS 491 ? A HIS 5 6 1 Y 1 A HIS 492 ? A HIS 6 7 1 Y 1 A HIS 493 ? A HIS 7 8 1 Y 1 A HIS 494 ? A HIS 8 9 1 Y 1 A HIS 495 ? A HIS 9 10 1 Y 1 A HIS 496 ? A HIS 10 11 1 Y 1 A GLY 497 ? A GLY 11 12 1 Y 1 A CYS 244 ? A CYS 258 13 1 Y 1 A GLY 245 ? A GLY 259 14 1 Y 1 A ASP 246 ? A ASP 260 15 1 Y 1 A LEU 247 ? A LEU 261 16 1 Y 1 A THR 248 ? A THR 262 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GDP PB P N N 88 GDP O1B O N N 89 GDP O2B O N N 90 GDP O3B O N N 91 GDP O3A O N N 92 GDP PA P N N 93 GDP O1A O N N 94 GDP O2A O N N 95 GDP "O5'" O N N 96 GDP "C5'" C N N 97 GDP "C4'" C N R 98 GDP "O4'" O N N 99 GDP "C3'" C N S 100 GDP "O3'" O N N 101 GDP "C2'" C N R 102 GDP "O2'" O N N 103 GDP "C1'" C N R 104 GDP N9 N Y N 105 GDP C8 C Y N 106 GDP N7 N Y N 107 GDP C5 C Y N 108 GDP C6 C N N 109 GDP O6 O N N 110 GDP N1 N N N 111 GDP C2 C N N 112 GDP N2 N N N 113 GDP N3 N N N 114 GDP C4 C Y N 115 GDP HOB2 H N N 116 GDP HOB3 H N N 117 GDP HOA2 H N N 118 GDP "H5'" H N N 119 GDP "H5''" H N N 120 GDP "H4'" H N N 121 GDP "H3'" H N N 122 GDP "HO3'" H N N 123 GDP "H2'" H N N 124 GDP "HO2'" H N N 125 GDP "H1'" H N N 126 GDP H8 H N N 127 GDP HN1 H N N 128 GDP HN21 H N N 129 GDP HN22 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 MG MG MG N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TYR N N N N 365 TYR CA C N S 366 TYR C C N N 367 TYR O O N N 368 TYR CB C N N 369 TYR CG C Y N 370 TYR CD1 C Y N 371 TYR CD2 C Y N 372 TYR CE1 C Y N 373 TYR CE2 C Y N 374 TYR CZ C Y N 375 TYR OH O N N 376 TYR OXT O N N 377 TYR H H N N 378 TYR H2 H N N 379 TYR HA H N N 380 TYR HB2 H N N 381 TYR HB3 H N N 382 TYR HD1 H N N 383 TYR HD2 H N N 384 TYR HE1 H N N 385 TYR HE2 H N N 386 TYR HH H N N 387 TYR HXT H N N 388 VAL N N N N 389 VAL CA C N S 390 VAL C C N N 391 VAL O O N N 392 VAL CB C N N 393 VAL CG1 C N N 394 VAL CG2 C N N 395 VAL OXT O N N 396 VAL H H N N 397 VAL H2 H N N 398 VAL HA H N N 399 VAL HB H N N 400 VAL HG11 H N N 401 VAL HG12 H N N 402 VAL HG13 H N N 403 VAL HG21 H N N 404 VAL HG22 H N N 405 VAL HG23 H N N 406 VAL HXT H N N 407 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GDP PB O1B doub N N 83 GDP PB O2B sing N N 84 GDP PB O3B sing N N 85 GDP PB O3A sing N N 86 GDP O2B HOB2 sing N N 87 GDP O3B HOB3 sing N N 88 GDP O3A PA sing N N 89 GDP PA O1A doub N N 90 GDP PA O2A sing N N 91 GDP PA "O5'" sing N N 92 GDP O2A HOA2 sing N N 93 GDP "O5'" "C5'" sing N N 94 GDP "C5'" "C4'" sing N N 95 GDP "C5'" "H5'" sing N N 96 GDP "C5'" "H5''" sing N N 97 GDP "C4'" "O4'" sing N N 98 GDP "C4'" "C3'" sing N N 99 GDP "C4'" "H4'" sing N N 100 GDP "O4'" "C1'" sing N N 101 GDP "C3'" "O3'" sing N N 102 GDP "C3'" "C2'" sing N N 103 GDP "C3'" "H3'" sing N N 104 GDP "O3'" "HO3'" sing N N 105 GDP "C2'" "O2'" sing N N 106 GDP "C2'" "C1'" sing N N 107 GDP "C2'" "H2'" sing N N 108 GDP "O2'" "HO2'" sing N N 109 GDP "C1'" N9 sing N N 110 GDP "C1'" "H1'" sing N N 111 GDP N9 C8 sing Y N 112 GDP N9 C4 sing Y N 113 GDP C8 N7 doub Y N 114 GDP C8 H8 sing N N 115 GDP N7 C5 sing Y N 116 GDP C5 C6 sing N N 117 GDP C5 C4 doub Y N 118 GDP C6 O6 doub N N 119 GDP C6 N1 sing N N 120 GDP N1 C2 sing N N 121 GDP N1 HN1 sing N N 122 GDP C2 N2 sing N N 123 GDP C2 N3 doub N N 124 GDP N2 HN21 sing N N 125 GDP N2 HN22 sing N N 126 GDP N3 C4 sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 VAL N CA sing N N 375 VAL N H sing N N 376 VAL N H2 sing N N 377 VAL CA C sing N N 378 VAL CA CB sing N N 379 VAL CA HA sing N N 380 VAL C O doub N N 381 VAL C OXT sing N N 382 VAL CB CG1 sing N N 383 VAL CB CG2 sing N N 384 VAL CB HB sing N N 385 VAL CG1 HG11 sing N N 386 VAL CG1 HG12 sing N N 387 VAL CG1 HG13 sing N N 388 VAL CG2 HG21 sing N N 389 VAL CG2 HG22 sing N N 390 VAL CG2 HG23 sing N N 391 VAL OXT HXT sing N N 392 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "GUANOSINE-5'-DIPHOSPHATE" GDP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1YRB _pdbx_initial_refinement_model.details ? #