data_2OY3 # _entry.id 2OY3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2OY3 RCSB RCSB041727 WWPDB D_1000041727 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2OYA _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2OY3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-02-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ojala, J.R.M.' 1 'Pikkarainen, T.' 2 'Tuuttila, A.' 3 'Sandalova, T.' 4 'Tryggvason, K.' 5 # _citation.id primary _citation.title ;Crystal structure of the cysteine-rich domain of scavenger receptor MARCO reveals the presence of a basic and an acidic cluster that both contribute to ligand recognition. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 16654 _citation.page_last 16666 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17405873 _citation.pdbx_database_id_DOI 10.1074/jbc.M701750200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ojala, J.R.' 1 ? primary 'Pikkarainen, T.' 2 ? primary 'Tuuttila, A.' 3 ? primary 'Sandalova, T.' 4 ? primary 'Tryggvason, K.' 5 ? # _cell.length_a 32.345 _cell.length_b 28.060 _cell.length_c 42.665 _cell.angle_alpha 90.000 _cell.angle_beta 99.190 _cell.angle_gamma 90.000 _cell.entry_id 2OY3 _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 2OY3 _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Macrophage receptor MARCO' 11337.281 1 ? ? 'C-terminal domain, scavenger receptor cysteine-rich domain (SRCR)' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 67 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Macrophage receptor with collagenous structure' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APLAQRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWD CSKNSWGNHNCVHNEDAGVECS ; _entity_poly.pdbx_seq_one_letter_code_can ;APLAQRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWD CSKNSWGNHNCVHNEDAGVECS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 LEU n 1 4 ALA n 1 5 GLN n 1 6 ARG n 1 7 VAL n 1 8 ARG n 1 9 ILE n 1 10 MET n 1 11 GLY n 1 12 GLY n 1 13 THR n 1 14 ASN n 1 15 ARG n 1 16 GLY n 1 17 ARG n 1 18 ALA n 1 19 GLU n 1 20 VAL n 1 21 TYR n 1 22 TYR n 1 23 ASN n 1 24 ASN n 1 25 GLU n 1 26 TRP n 1 27 GLY n 1 28 THR n 1 29 ILE n 1 30 CYS n 1 31 ASP n 1 32 ASP n 1 33 ASP n 1 34 TRP n 1 35 ASP n 1 36 ASN n 1 37 ASN n 1 38 ASP n 1 39 ALA n 1 40 THR n 1 41 VAL n 1 42 PHE n 1 43 CYS n 1 44 ARG n 1 45 MET n 1 46 LEU n 1 47 GLY n 1 48 TYR n 1 49 SER n 1 50 ARG n 1 51 GLY n 1 52 ARG n 1 53 ALA n 1 54 LEU n 1 55 SER n 1 56 SER n 1 57 TYR n 1 58 GLY n 1 59 GLY n 1 60 GLY n 1 61 SER n 1 62 GLY n 1 63 ASN n 1 64 ILE n 1 65 TRP n 1 66 LEU n 1 67 ASP n 1 68 ASN n 1 69 VAL n 1 70 ASN n 1 71 CYS n 1 72 ARG n 1 73 GLY n 1 74 THR n 1 75 GLU n 1 76 ASN n 1 77 SER n 1 78 LEU n 1 79 TRP n 1 80 ASP n 1 81 CYS n 1 82 SER n 1 83 LYS n 1 84 ASN n 1 85 SER n 1 86 TRP n 1 87 GLY n 1 88 ASN n 1 89 HIS n 1 90 ASN n 1 91 CYS n 1 92 VAL n 1 93 HIS n 1 94 ASN n 1 95 GLU n 1 96 ASP n 1 97 ALA n 1 98 GLY n 1 99 VAL n 1 100 GLU n 1 101 CYS n 1 102 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Marco _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain C57BL/6 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus Homo _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293-EBNA _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCEP-PU _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MARCO_MOUSE _struct_ref.pdbx_db_accession Q60754 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWDCSKN SWGNHNCVHNEDAGVECS ; _struct_ref.pdbx_align_begin 421 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2OY3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 102 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q60754 _struct_ref_seq.db_align_beg 421 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 518 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 421 _struct_ref_seq.pdbx_auth_seq_align_end 518 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OY3 ALA A 1 ? UNP Q60754 ? ? 'cloning artifact' 417 1 1 2OY3 PRO A 2 ? UNP Q60754 ? ? 'cloning artifact' 418 2 1 2OY3 LEU A 3 ? UNP Q60754 ? ? 'cloning artifact' 419 3 1 2OY3 ALA A 4 ? UNP Q60754 ? ? 'cloning artifact' 420 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2OY3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.69 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 27.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '12% PEG 8000, 0.1M Bis-Tris, 0.2M Ammonium acetate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 130 mm' _diffrn_detector.pdbx_collection_date 2002-12-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2OY3 _reflns.d_resolution_high 1.780 _reflns.d_resolution_low 25.000 _reflns.number_obs 7161 _reflns.pdbx_Rmerge_I_obs 0.048 _reflns.pdbx_netI_over_sigmaI 32.42 _reflns.pdbx_chi_squared 1.496 _reflns.percent_possible_obs 96.200 _reflns.observed_criterion_sigma_F 0.013 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 7444 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.78 _reflns_shell.d_res_low 1.81 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.375 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.570 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 282 _reflns_shell.percent_possible_all 78.80 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2OY3 _refine.ls_d_res_high 1.780 _refine.ls_d_res_low 23.700 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 7155 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.167 _refine.ls_R_factor_R_work 0.161 _refine.ls_R_factor_R_free 0.21 _refine.ls_percent_reflns_R_free 12.600 _refine.ls_number_reflns_R_free 903 _refine.B_iso_mean 19.731 _refine.aniso_B[1][1] -0.870 _refine.aniso_B[2][2] 0.790 _refine.aniso_B[3][3] 0.290 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.630 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.pdbx_overall_ESU_R 0.165 _refine.pdbx_overall_ESU_R_Free 0.145 _refine.overall_SU_ML 0.089 _refine.overall_SU_B 2.810 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 7155 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 1BY2' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 789 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 858 _refine_hist.d_res_high 1.780 _refine_hist.d_res_low 23.700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 811 0.013 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1105 1.345 1.877 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 103 6.941 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 49 31.782 24.286 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 120 11.671 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 12.119 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 105 0.105 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 673 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 392 0.186 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 543 0.298 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 66 0.135 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 46 0.197 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 13 0.182 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 507 0.813 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 786 1.307 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 365 2.250 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 319 3.225 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.780 _refine_ls_shell.d_res_low 1.826 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 383 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.355 _refine_ls_shell.R_factor_R_free 0.464 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 446 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2OY3 _struct.title 'Crystal structure analysis of the monomeric SRCR domain of mouse MARCO' _struct.pdbx_descriptor 'Macrophage receptor MARCO' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2OY3 _struct_keywords.pdbx_keywords 'LIGAND BINDING PROTEIN' _struct_keywords.text ;Extracellular matrix, Scavenger receptor cysteine-rich (SRCR), macrophage receptor, ligand binding domain, basic cluster, acidic cluster, LIGAND BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 35 ? MET A 45 ? ASP A 451 MET A 461 1 ? 11 HELX_P HELX_P2 2 SER A 77 ? CYS A 81 ? SER A 493 CYS A 497 5 ? 5 HELX_P HELX_P3 3 VAL A 92 ? ASP A 96 ? VAL A 508 ASP A 512 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 446 A CYS 507 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf2 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 101 SG ? ? A CYS 459 A CYS 517 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf3 disulf ? ? A CYS 71 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 487 A CYS 497 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc1 metalc ? ? D HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 7 A MG 201 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 15 A MG 202 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc3 metalc ? ? D HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 16 A MG 201 1_555 ? ? ? ? ? ? ? 2.206 ? ? metalc4 metalc ? ? D HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 21 A MG 201 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc5 metalc ? ? D HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 24 A MG 201 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc6 metalc ? ? D HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 31 A MG 201 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc7 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 53 A MG 202 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 A ASP 32 OD1 ? ? A MG 201 A ASP 448 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 A ASP 33 O ? ? A MG 202 A ASP 449 1_555 ? ? ? ? ? ? ? 2.244 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 A ASP 38 OD2 ? ? A MG 202 A ASP 454 1_555 ? ? ? ? ? ? ? 2.505 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 A VAL 69 O ? ? A MG 202 A VAL 485 1_555 ? ? ? ? ? ? ? 2.280 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? GLY A 11 ? VAL A 423 GLY A 427 A 2 ARG A 15 ? TYR A 22 ? ARG A 431 TYR A 438 A 3 GLY A 98 ? SER A 102 ? GLY A 514 SER A 518 A 4 ARG A 50 ? LEU A 54 ? ARG A 466 LEU A 470 B 1 VAL A 7 ? GLY A 11 ? VAL A 423 GLY A 427 B 2 ARG A 15 ? TYR A 22 ? ARG A 431 TYR A 438 B 3 GLU A 25 ? ILE A 29 ? GLU A 441 ILE A 445 B 4 ILE A 64 ? LEU A 66 ? ILE A 480 LEU A 482 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MET A 10 ? N MET A 426 O ARG A 17 ? O ARG A 433 A 2 3 N GLY A 16 ? N GLY A 432 O VAL A 99 ? O VAL A 515 A 3 4 O GLY A 98 ? O GLY A 514 N LEU A 54 ? N LEU A 470 B 1 2 N MET A 10 ? N MET A 426 O ARG A 17 ? O ARG A 433 B 2 3 N VAL A 20 ? N VAL A 436 O GLY A 27 ? O GLY A 443 B 3 4 N THR A 28 ? N THR A 444 O TRP A 65 ? O TRP A 481 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 6 'BINDING SITE FOR RESIDUE MG A 201' AC2 Software A MG 202 ? 6 'BINDING SITE FOR RESIDUE MG A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 7 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 16 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 21 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 24 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 31 . ? 1_555 ? 6 AC1 6 ASP A 32 ? ASP A 448 . ? 1_555 ? 7 AC2 6 HOH D . ? HOH A 15 . ? 1_555 ? 8 AC2 6 HOH D . ? HOH A 53 . ? 1_555 ? 9 AC2 6 ASP A 33 ? ASP A 449 . ? 1_555 ? 10 AC2 6 ASP A 35 ? ASP A 451 . ? 1_555 ? 11 AC2 6 ASP A 38 ? ASP A 454 . ? 1_555 ? 12 AC2 6 VAL A 69 ? VAL A 485 . ? 1_555 ? # _atom_sites.entry_id 2OY3 _atom_sites.fract_transf_matrix[1][1] 0.030917 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005003 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035638 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023743 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 417 ? ? ? A . n A 1 2 PRO 2 418 ? ? ? A . n A 1 3 LEU 3 419 ? ? ? A . n A 1 4 ALA 4 420 ? ? ? A . n A 1 5 GLN 5 421 421 GLN GLN A . n A 1 6 ARG 6 422 422 ARG ARG A . n A 1 7 VAL 7 423 423 VAL VAL A . n A 1 8 ARG 8 424 424 ARG ARG A . n A 1 9 ILE 9 425 425 ILE ILE A . n A 1 10 MET 10 426 426 MET MET A . n A 1 11 GLY 11 427 427 GLY GLY A . n A 1 12 GLY 12 428 428 GLY GLY A . n A 1 13 THR 13 429 429 THR THR A . n A 1 14 ASN 14 430 430 ASN ASN A . n A 1 15 ARG 15 431 431 ARG ARG A . n A 1 16 GLY 16 432 432 GLY GLY A . n A 1 17 ARG 17 433 433 ARG ARG A . n A 1 18 ALA 18 434 434 ALA ALA A . n A 1 19 GLU 19 435 435 GLU GLU A . n A 1 20 VAL 20 436 436 VAL VAL A . n A 1 21 TYR 21 437 437 TYR TYR A . n A 1 22 TYR 22 438 438 TYR TYR A . n A 1 23 ASN 23 439 439 ASN ASN A . n A 1 24 ASN 24 440 440 ASN ASN A . n A 1 25 GLU 25 441 441 GLU GLU A . n A 1 26 TRP 26 442 442 TRP TRP A . n A 1 27 GLY 27 443 443 GLY GLY A . n A 1 28 THR 28 444 444 THR THR A . n A 1 29 ILE 29 445 445 ILE ILE A . n A 1 30 CYS 30 446 446 CYS CYS A . n A 1 31 ASP 31 447 447 ASP ASP A . n A 1 32 ASP 32 448 448 ASP ASP A . n A 1 33 ASP 33 449 449 ASP ASP A . n A 1 34 TRP 34 450 450 TRP TRP A . n A 1 35 ASP 35 451 451 ASP ASP A . n A 1 36 ASN 36 452 452 ASN ASN A . n A 1 37 ASN 37 453 453 ASN ASN A . n A 1 38 ASP 38 454 454 ASP ASP A . n A 1 39 ALA 39 455 455 ALA ALA A . n A 1 40 THR 40 456 456 THR THR A . n A 1 41 VAL 41 457 457 VAL VAL A . n A 1 42 PHE 42 458 458 PHE PHE A . n A 1 43 CYS 43 459 459 CYS CYS A . n A 1 44 ARG 44 460 460 ARG ARG A . n A 1 45 MET 45 461 461 MET MET A . n A 1 46 LEU 46 462 462 LEU LEU A . n A 1 47 GLY 47 463 463 GLY GLY A . n A 1 48 TYR 48 464 464 TYR TYR A . n A 1 49 SER 49 465 465 SER SER A . n A 1 50 ARG 50 466 466 ARG ARG A . n A 1 51 GLY 51 467 467 GLY GLY A . n A 1 52 ARG 52 468 468 ARG ARG A . n A 1 53 ALA 53 469 469 ALA ALA A . n A 1 54 LEU 54 470 470 LEU LEU A . n A 1 55 SER 55 471 471 SER SER A . n A 1 56 SER 56 472 472 SER SER A . n A 1 57 TYR 57 473 473 TYR TYR A . n A 1 58 GLY 58 474 474 GLY GLY A . n A 1 59 GLY 59 475 475 GLY GLY A . n A 1 60 GLY 60 476 476 GLY GLY A . n A 1 61 SER 61 477 477 SER SER A . n A 1 62 GLY 62 478 478 GLY GLY A . n A 1 63 ASN 63 479 479 ASN ASN A . n A 1 64 ILE 64 480 480 ILE ILE A . n A 1 65 TRP 65 481 481 TRP TRP A . n A 1 66 LEU 66 482 482 LEU LEU A . n A 1 67 ASP 67 483 483 ASP ASP A . n A 1 68 ASN 68 484 484 ASN ASN A . n A 1 69 VAL 69 485 485 VAL VAL A . n A 1 70 ASN 70 486 486 ASN ASN A . n A 1 71 CYS 71 487 487 CYS CYS A . n A 1 72 ARG 72 488 488 ARG ARG A . n A 1 73 GLY 73 489 489 GLY GLY A . n A 1 74 THR 74 490 490 THR THR A . n A 1 75 GLU 75 491 491 GLU GLU A . n A 1 76 ASN 76 492 492 ASN ASN A . n A 1 77 SER 77 493 493 SER SER A . n A 1 78 LEU 78 494 494 LEU LEU A . n A 1 79 TRP 79 495 495 TRP TRP A . n A 1 80 ASP 80 496 496 ASP ASP A . n A 1 81 CYS 81 497 497 CYS CYS A . n A 1 82 SER 82 498 498 SER SER A . n A 1 83 LYS 83 499 499 LYS LYS A . n A 1 84 ASN 84 500 500 ASN ASN A . n A 1 85 SER 85 501 501 SER SER A . n A 1 86 TRP 86 502 502 TRP TRP A . n A 1 87 GLY 87 503 503 GLY GLY A . n A 1 88 ASN 88 504 504 ASN ASN A . n A 1 89 HIS 89 505 505 HIS HIS A . n A 1 90 ASN 90 506 506 ASN ASN A . n A 1 91 CYS 91 507 507 CYS CYS A . n A 1 92 VAL 92 508 508 VAL VAL A . n A 1 93 HIS 93 509 509 HIS HIS A . n A 1 94 ASN 94 510 510 ASN ASN A . n A 1 95 GLU 95 511 511 GLU GLU A . n A 1 96 ASP 96 512 512 ASP ASP A . n A 1 97 ALA 97 513 513 ALA ALA A . n A 1 98 GLY 98 514 514 GLY GLY A . n A 1 99 VAL 99 515 515 VAL VAL A . n A 1 100 GLU 100 516 516 GLU GLU A . n A 1 101 CYS 101 517 517 CYS CYS A . n A 1 102 SER 102 518 518 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 201 MG MG A . C 2 MG 1 202 202 MG MG A . D 3 HOH 1 1 1 HOH HOH A . D 3 HOH 2 2 2 HOH HOH A . D 3 HOH 3 3 3 HOH HOH A . D 3 HOH 4 4 4 HOH HOH A . D 3 HOH 5 5 5 HOH HOH A . D 3 HOH 6 6 6 HOH HOH A . D 3 HOH 7 7 7 HOH HOH A . D 3 HOH 8 8 8 HOH HOH A . D 3 HOH 9 9 9 HOH HOH A . D 3 HOH 10 10 10 HOH HOH A . D 3 HOH 11 11 11 HOH HOH A . D 3 HOH 12 12 12 HOH HOH A . D 3 HOH 13 13 13 HOH HOH A . D 3 HOH 14 14 14 HOH HOH A . D 3 HOH 15 15 15 HOH HOH A . D 3 HOH 16 16 16 HOH HOH A . D 3 HOH 17 17 17 HOH HOH A . D 3 HOH 18 18 18 HOH HOH A . D 3 HOH 19 19 19 HOH HOH A . D 3 HOH 20 20 20 HOH HOH A . D 3 HOH 21 21 21 HOH HOH A . D 3 HOH 22 22 22 HOH HOH A . D 3 HOH 23 23 23 HOH HOH A . D 3 HOH 24 24 24 HOH HOH A . D 3 HOH 25 25 25 HOH HOH A . D 3 HOH 26 26 26 HOH HOH A . D 3 HOH 27 27 27 HOH HOH A . D 3 HOH 28 28 28 HOH HOH A . D 3 HOH 29 29 29 HOH HOH A . D 3 HOH 30 30 30 HOH HOH A . D 3 HOH 31 31 31 HOH HOH A . D 3 HOH 32 32 32 HOH HOH A . D 3 HOH 33 33 33 HOH HOH A . D 3 HOH 34 34 34 HOH HOH A . D 3 HOH 35 35 35 HOH HOH A . D 3 HOH 36 36 36 HOH HOH A . D 3 HOH 37 37 37 HOH HOH A . D 3 HOH 38 38 38 HOH HOH A . D 3 HOH 39 39 39 HOH HOH A . D 3 HOH 40 40 40 HOH HOH A . D 3 HOH 41 41 41 HOH HOH A . D 3 HOH 42 42 42 HOH HOH A . D 3 HOH 43 43 43 HOH HOH A . D 3 HOH 44 44 44 HOH HOH A . D 3 HOH 45 45 45 HOH HOH A . D 3 HOH 46 46 46 HOH HOH A . D 3 HOH 47 47 47 HOH HOH A . D 3 HOH 48 48 48 HOH HOH A . D 3 HOH 49 49 49 HOH HOH A . D 3 HOH 50 50 50 HOH HOH A . D 3 HOH 51 51 51 HOH HOH A . D 3 HOH 52 52 52 HOH HOH A . D 3 HOH 53 53 53 HOH HOH A . D 3 HOH 54 54 54 HOH HOH A . D 3 HOH 55 55 55 HOH HOH A . D 3 HOH 56 56 56 HOH HOH A . D 3 HOH 57 57 57 HOH HOH A . D 3 HOH 58 58 58 HOH HOH A . D 3 HOH 59 59 59 HOH HOH A . D 3 HOH 60 60 60 HOH HOH A . D 3 HOH 61 61 61 HOH HOH A . D 3 HOH 62 62 62 HOH HOH A . D 3 HOH 63 63 63 HOH HOH A . D 3 HOH 64 64 64 HOH HOH A . D 3 HOH 65 65 65 HOH HOH A . D 3 HOH 66 66 66 HOH HOH A . D 3 HOH 67 67 67 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 7 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 16 ? 1_555 93.0 ? 2 O ? D HOH . ? A HOH 7 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 21 ? 1_555 93.2 ? 3 O ? D HOH . ? A HOH 16 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 21 ? 1_555 98.9 ? 4 O ? D HOH . ? A HOH 7 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 24 ? 1_555 90.5 ? 5 O ? D HOH . ? A HOH 16 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 24 ? 1_555 79.4 ? 6 O ? D HOH . ? A HOH 21 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 24 ? 1_555 176.0 ? 7 O ? D HOH . ? A HOH 7 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 31 ? 1_555 91.2 ? 8 O ? D HOH . ? A HOH 16 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 31 ? 1_555 172.4 ? 9 O ? D HOH . ? A HOH 21 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 31 ? 1_555 87.2 ? 10 O ? D HOH . ? A HOH 24 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? D HOH . ? A HOH 31 ? 1_555 94.2 ? 11 O ? D HOH . ? A HOH 7 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OD1 ? A ASP 32 ? A ASP 448 ? 1_555 179.5 ? 12 O ? D HOH . ? A HOH 16 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OD1 ? A ASP 32 ? A ASP 448 ? 1_555 86.8 ? 13 O ? D HOH . ? A HOH 21 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OD1 ? A ASP 32 ? A ASP 448 ? 1_555 87.2 ? 14 O ? D HOH . ? A HOH 24 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OD1 ? A ASP 32 ? A ASP 448 ? 1_555 89.1 ? 15 O ? D HOH . ? A HOH 31 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OD1 ? A ASP 32 ? A ASP 448 ? 1_555 88.9 ? 16 O ? D HOH . ? A HOH 15 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? D HOH . ? A HOH 53 ? 1_555 95.8 ? 17 O ? D HOH . ? A HOH 15 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? A ASP 33 ? A ASP 449 ? 1_555 145.0 ? 18 O ? D HOH . ? A HOH 53 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? A ASP 33 ? A ASP 449 ? 1_555 98.1 ? 19 O ? D HOH . ? A HOH 15 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OD2 ? A ASP 38 ? A ASP 454 ? 1_555 85.9 ? 20 O ? D HOH . ? A HOH 53 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OD2 ? A ASP 38 ? A ASP 454 ? 1_555 167.9 ? 21 O ? A ASP 33 ? A ASP 449 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 OD2 ? A ASP 38 ? A ASP 454 ? 1_555 87.1 ? 22 O ? D HOH . ? A HOH 15 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? A VAL 69 ? A VAL 485 ? 1_555 108.4 ? 23 O ? D HOH . ? A HOH 53 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? A VAL 69 ? A VAL 485 ? 1_555 85.2 ? 24 O ? A ASP 33 ? A ASP 449 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? A VAL 69 ? A VAL 485 ? 1_555 104.7 ? 25 OD2 ? A ASP 38 ? A ASP 454 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? A VAL 69 ? A VAL 485 ? 1_555 82.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-17 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-03-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' entity_src_gen 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_entity_src_gen.pdbx_host_org_cell_line' 2 5 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.value' 16 5 'Structure model' '_struct_conn.pdbx_dist_value' 17 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 5 'Structure model' '_struct_ref_seq_dif.details' 29 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 AMoRE . ? program 'Jorge Navaza' ccp4@dl.ac.uk phasing http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 429 ? ? -87.64 -71.98 2 1 ASP A 448 ? ? -55.19 109.11 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 417 ? A ALA 1 2 1 Y 1 A PRO 418 ? A PRO 2 3 1 Y 1 A LEU 419 ? A LEU 3 4 1 Y 1 A ALA 420 ? A ALA 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH #