HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-FEB-07 2OZ8 TITLE CRYSTAL STRUCTURE OF PUTATIVE MANDELATE RACEMASE FROM MESORHIZOBIUM TITLE 2 LOTI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLL7089 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: MLL7089; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,J.FREEMAN,K.T.BAIN,B.WU,V.SRIDHAR,D.SMITH,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 21-FEB-24 2OZ8 1 REMARK REVDAT 7 03-FEB-21 2OZ8 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 14-NOV-18 2OZ8 1 AUTHOR REVDAT 5 18-OCT-17 2OZ8 1 REMARK REVDAT 4 24-OCT-12 2OZ8 1 AUTHOR REVDAT 3 13-JUL-11 2OZ8 1 VERSN REVDAT 2 24-FEB-09 2OZ8 1 VERSN REVDAT 1 13-MAR-07 2OZ8 0 JRNL AUTH J.B.BONANNO,J.FREEMAN,K.T.BAIN,B.WU,V.SRIDHAR,D.SMITH, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE MANDELATE RACEMASE FROM JRNL TITL 2 MESORHIZOBIUM LOTI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2632 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.326 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.172 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6125 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8335 ; 1.710 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 752 ; 6.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;35.759 ;22.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 995 ;16.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;22.416 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 908 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4730 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2684 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4088 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 401 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3835 ; 1.075 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5975 ; 1.730 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2603 ; 2.764 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2355 ; 4.185 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2OZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 29.867 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.18200 REMARK 200 R SYM (I) : 0.18200 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87200 REMARK 200 R SYM FOR SHELL (I) : 0.87200 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PH 5.5, 1% PEG 3350, 1M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 80.08800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 80.08800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 80.08800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 80.08800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 80.08800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.08800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 80.08800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.08800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 AUTHORS STATE THAT THE ASSEMBLY OF THE BIOLOGICAL UNIT REMARK 300 THAT IS SHOWN IN REMARK 350 IS PUTATIVE AT THE TIME OF REMARK 300 DEPOSITION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 80.08800 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 80.08800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -80.08800 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 80.08800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 160.17600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 477 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 499 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 480 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 481 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 GLY A 90 REMARK 465 GLY A 91 REMARK 465 ASN A 92 REMARK 465 GLN A 93 REMARK 465 ARG A 94 REMARK 465 ALA A 95 REMARK 465 ALA A 378 REMARK 465 LYS A 379 REMARK 465 GLU A 380 REMARK 465 GLY A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 GLY B 90 REMARK 465 GLY B 91 REMARK 465 ASN B 92 REMARK 465 GLN B 93 REMARK 465 ARG B 94 REMARK 465 ALA B 95 REMARK 465 ALA B 378 REMARK 465 LYS B 379 REMARK 465 GLU B 380 REMARK 465 GLY B 381 REMARK 465 HIS B 382 REMARK 465 HIS B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 58 OE2 GLU B 62 2.12 REMARK 500 NH2 ARG A 341 O HOH A 448 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU A 197 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 237 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 17 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 17 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 57 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 56 -175.36 -68.80 REMARK 500 VAL A 166 -168.47 -129.22 REMARK 500 ASP A 223 57.97 39.32 REMARK 500 LEU A 226 117.61 -30.51 REMARK 500 HIS A 271 -135.97 -118.60 REMARK 500 PRO B 88 -73.71 -52.41 REMARK 500 ASP B 223 57.15 33.90 REMARK 500 HIS B 271 -130.62 -115.10 REMARK 500 GLN B 273 90.13 -66.75 REMARK 500 ASP B 340 36.30 -90.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 392 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9287A RELATED DB: TARGETDB DBREF 2OZ8 A 2 379 UNP Q987E0 Q987E0_RHILO 2 379 DBREF 2OZ8 B 2 379 UNP Q987E0 Q987E0_RHILO 2 379 SEQADV 2OZ8 MET A -1 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 SER A 0 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 LEU A 1 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 GLU A 380 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 GLY A 381 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS A 382 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS A 383 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS A 384 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS A 385 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS A 386 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS A 387 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 MET B -1 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 SER B 0 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 LEU B 1 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 GLU B 380 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 GLY B 381 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS B 382 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS B 383 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS B 384 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS B 385 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS B 386 UNP Q987E0 CLONING ARTIFACT SEQADV 2OZ8 HIS B 387 UNP Q987E0 CLONING ARTIFACT SEQRES 1 A 389 MET SER LEU SER LEU SER HIS PHE ARG ILE THR ARG PHE SEQRES 2 A 389 GLN PHE ALA ARG ASP ARG VAL ILE GLY ASP SER GLN VAL SEQRES 3 A 389 ARG ALA ASP ASP VAL ASN VAL ALA ALA LEU GLU LEU VAL SEQRES 4 A 389 SER GLU SER GLY GLU VAL GLY LEU GLY PHE ILE GLN THR SEQRES 5 A 389 LEU PHE ASN PRO LEU PRO ASP GLN GLN GLU ILE GLU SER SEQRES 6 A 389 VAL PHE GLU HIS GLU VAL TRP PRO SER LEU LYS GLY ASN SEQRES 7 A 389 ARG ALA ILE ALA LEU VAL HIS ARG VAL ASN ARG PRO ARG SEQRES 8 A 389 GLY GLY ASN GLN ARG ALA TYR SER LEU PRO PHE HIS GLU SEQRES 9 A 389 ALA VAL GLN VAL ALA LEU TRP ASP LEU ALA ALA LYS GLU SEQRES 10 A 389 ALA GLY LEU PRO LEU HIS VAL LEU LEU GLY SER ARG ARG SEQRES 11 A 389 ASN ARG VAL LYS ALA TYR ALA SER GLY LEU ASP PHE HIS SEQRES 12 A 389 LEU ASP ASP ASP ALA PHE VAL SER LEU PHE SER HIS ALA SEQRES 13 A 389 ALA SER ILE GLY TYR SER ALA PHE LYS ILE LYS VAL GLY SEQRES 14 A 389 HIS ARG ASP PHE ASP ARG ASP LEU ARG ARG LEU GLU LEU SEQRES 15 A 389 LEU LYS THR CYS VAL PRO ALA GLY SER LYS VAL MET ILE SEQRES 16 A 389 ASP PRO ASN GLU ALA TRP THR SER LYS GLU ALA LEU THR SEQRES 17 A 389 LYS LEU VAL ALA ILE ARG GLU ALA GLY HIS ASP LEU LEU SEQRES 18 A 389 TRP VAL GLU ASP PRO ILE LEU ARG HIS ASP HIS ASP GLY SEQRES 19 A 389 LEU ARG THR LEU ARG HIS ALA VAL THR TRP THR GLN ILE SEQRES 20 A 389 ASN SER GLY GLU TYR LEU ASP LEU GLN GLY LYS ARG LEU SEQRES 21 A 389 LEU LEU GLU ALA HIS ALA ALA ASP ILE LEU ASN VAL HIS SEQRES 22 A 389 GLY GLN VAL THR ASP VAL MET ARG ILE GLY TRP LEU ALA SEQRES 23 A 389 ALA GLU LEU GLY ILE PRO ILE SER ILE GLY ASN THR PHE SEQRES 24 A 389 LEU GLU ALA GLY VAL HIS MET ALA VAL ALA LEU PRO GLU SEQRES 25 A 389 VAL GLU TRP LEU GLU TYR SER PHE GLN ASN PHE ASP HIS SEQRES 26 A 389 LEU VAL GLU GLN PRO ILE GLU ILE ARG ASP GLY TYR ALA SEQRES 27 A 389 TYR ALA PRO ASP ARG PRO GLY HIS GLY LEU VAL LEU SER SEQRES 28 A 389 GLU LYS ALA ARG GLY GLU TRP SER ARG PRO ARG ARG LEU SEQRES 29 A 389 ALA ARG SER GLU LEU GLY ALA ALA PRO GLU ASN PRO ARG SEQRES 30 A 389 LEU PRO ALA LYS GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 389 MET SER LEU SER LEU SER HIS PHE ARG ILE THR ARG PHE SEQRES 2 B 389 GLN PHE ALA ARG ASP ARG VAL ILE GLY ASP SER GLN VAL SEQRES 3 B 389 ARG ALA ASP ASP VAL ASN VAL ALA ALA LEU GLU LEU VAL SEQRES 4 B 389 SER GLU SER GLY GLU VAL GLY LEU GLY PHE ILE GLN THR SEQRES 5 B 389 LEU PHE ASN PRO LEU PRO ASP GLN GLN GLU ILE GLU SER SEQRES 6 B 389 VAL PHE GLU HIS GLU VAL TRP PRO SER LEU LYS GLY ASN SEQRES 7 B 389 ARG ALA ILE ALA LEU VAL HIS ARG VAL ASN ARG PRO ARG SEQRES 8 B 389 GLY GLY ASN GLN ARG ALA TYR SER LEU PRO PHE HIS GLU SEQRES 9 B 389 ALA VAL GLN VAL ALA LEU TRP ASP LEU ALA ALA LYS GLU SEQRES 10 B 389 ALA GLY LEU PRO LEU HIS VAL LEU LEU GLY SER ARG ARG SEQRES 11 B 389 ASN ARG VAL LYS ALA TYR ALA SER GLY LEU ASP PHE HIS SEQRES 12 B 389 LEU ASP ASP ASP ALA PHE VAL SER LEU PHE SER HIS ALA SEQRES 13 B 389 ALA SER ILE GLY TYR SER ALA PHE LYS ILE LYS VAL GLY SEQRES 14 B 389 HIS ARG ASP PHE ASP ARG ASP LEU ARG ARG LEU GLU LEU SEQRES 15 B 389 LEU LYS THR CYS VAL PRO ALA GLY SER LYS VAL MET ILE SEQRES 16 B 389 ASP PRO ASN GLU ALA TRP THR SER LYS GLU ALA LEU THR SEQRES 17 B 389 LYS LEU VAL ALA ILE ARG GLU ALA GLY HIS ASP LEU LEU SEQRES 18 B 389 TRP VAL GLU ASP PRO ILE LEU ARG HIS ASP HIS ASP GLY SEQRES 19 B 389 LEU ARG THR LEU ARG HIS ALA VAL THR TRP THR GLN ILE SEQRES 20 B 389 ASN SER GLY GLU TYR LEU ASP LEU GLN GLY LYS ARG LEU SEQRES 21 B 389 LEU LEU GLU ALA HIS ALA ALA ASP ILE LEU ASN VAL HIS SEQRES 22 B 389 GLY GLN VAL THR ASP VAL MET ARG ILE GLY TRP LEU ALA SEQRES 23 B 389 ALA GLU LEU GLY ILE PRO ILE SER ILE GLY ASN THR PHE SEQRES 24 B 389 LEU GLU ALA GLY VAL HIS MET ALA VAL ALA LEU PRO GLU SEQRES 25 B 389 VAL GLU TRP LEU GLU TYR SER PHE GLN ASN PHE ASP HIS SEQRES 26 B 389 LEU VAL GLU GLN PRO ILE GLU ILE ARG ASP GLY TYR ALA SEQRES 27 B 389 TYR ALA PRO ASP ARG PRO GLY HIS GLY LEU VAL LEU SER SEQRES 28 B 389 GLU LYS ALA ARG GLY GLU TRP SER ARG PRO ARG ARG LEU SEQRES 29 B 389 ALA ARG SER GLU LEU GLY ALA ALA PRO GLU ASN PRO ARG SEQRES 30 B 389 LEU PRO ALA LYS GLU GLY HIS HIS HIS HIS HIS HIS HET SO4 A 388 5 HET SO4 A 389 5 HET SO4 A 390 5 HET SO4 B 388 5 HET SO4 B 389 5 HET SO4 B 390 5 HET SO4 B 391 5 HET SO4 B 392 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 8(O4 S 2-) FORMUL 11 HOH *304(H2 O) HELIX 1 1 ASP A 57 VAL A 69 1 13 HELIX 2 2 VAL A 69 LYS A 74 1 6 HELIX 3 3 ARG A 77 VAL A 82 1 6 HELIX 4 4 PHE A 100 GLY A 117 1 18 HELIX 5 5 PRO A 119 LEU A 124 1 6 HELIX 6 6 ASP A 143 ILE A 157 1 15 HELIX 7 7 ASP A 170 THR A 183 1 14 HELIX 8 8 THR A 200 ALA A 214 1 15 HELIX 9 9 ASP A 229 VAL A 240 1 12 HELIX 10 10 ASP A 252 ALA A 262 1 11 HELIX 11 11 GLN A 273 GLY A 288 1 16 HELIX 12 12 THR A 296 ALA A 300 5 5 HELIX 13 13 GLY A 301 LEU A 308 1 8 HELIX 14 14 PHE A 321 VAL A 325 5 5 HELIX 15 15 SER A 349 TRP A 356 1 8 HELIX 16 16 ALA A 363 LEU A 367 5 5 HELIX 17 17 ASP B 57 VAL B 69 1 13 HELIX 18 18 VAL B 69 LYS B 74 1 6 HELIX 19 19 ARG B 77 VAL B 82 1 6 HELIX 20 20 PHE B 100 ALA B 116 1 17 HELIX 21 21 PRO B 119 LEU B 124 1 6 HELIX 22 22 ASP B 143 ILE B 157 1 15 HELIX 23 23 ASP B 170 CYS B 184 1 15 HELIX 24 24 THR B 200 ALA B 214 1 15 HELIX 25 25 ASP B 229 VAL B 240 1 12 HELIX 26 26 ASP B 252 ALA B 262 1 11 HELIX 27 27 GLN B 273 GLY B 288 1 16 HELIX 28 28 THR B 296 ALA B 300 5 5 HELIX 29 29 GLY B 301 LEU B 308 1 8 HELIX 30 30 PHE B 321 VAL B 325 5 5 HELIX 31 31 SER B 349 TRP B 356 1 8 HELIX 32 32 ALA B 363 LEU B 367 5 5 SHEET 1 A 3 LEU A 3 GLY A 20 0 SHEET 2 A 3 ARG A 25 SER A 38 -1 O ASP A 27 N ARG A 15 SHEET 3 A 3 VAL A 43 THR A 50 -1 O GLY A 46 N LEU A 34 SHEET 1 B11 ILE A 331 ARG A 332 0 SHEET 2 B11 TYR A 335 TYR A 337 -1 O TYR A 335 N ARG A 332 SHEET 3 B11 ARG A 130 SER A 136 -1 N VAL A 131 O ALA A 336 SHEET 4 B11 VAL A 311 TYR A 316 1 O TYR A 316 N SER A 136 SHEET 5 B11 ILE A 291 ILE A 293 1 N ILE A 293 O GLU A 315 SHEET 6 B11 ILE A 267 VAL A 270 1 N LEU A 268 O SER A 292 SHEET 7 B11 GLN A 244 SER A 247 1 N SER A 247 O ILE A 267 SHEET 8 B11 TRP A 220 GLU A 222 1 N VAL A 221 O ASN A 246 SHEET 9 B11 LYS A 190 ASP A 194 1 N ILE A 193 O GLU A 222 SHEET 10 B11 ALA A 161 LYS A 165 1 N PHE A 162 O MET A 192 SHEET 11 B11 ARG A 130 SER A 136 1 N ALA A 135 O ALA A 161 SHEET 1 C 3 LEU B 3 GLY B 20 0 SHEET 2 C 3 ARG B 25 SER B 38 -1 O ASP B 27 N ARG B 15 SHEET 3 C 3 VAL B 43 THR B 50 -1 O GLY B 44 N LEU B 36 SHEET 1 D11 GLU B 330 ARG B 332 0 SHEET 2 D11 TYR B 335 TYR B 337 -1 O TYR B 337 N GLU B 330 SHEET 3 D11 ARG B 130 SER B 136 -1 N VAL B 131 O ALA B 336 SHEET 4 D11 VAL B 311 TYR B 316 1 O TYR B 316 N SER B 136 SHEET 5 D11 ILE B 291 ILE B 293 1 N ILE B 293 O GLU B 315 SHEET 6 D11 ILE B 267 VAL B 270 1 N VAL B 270 O SER B 292 SHEET 7 D11 GLN B 244 SER B 247 1 N SER B 247 O ILE B 267 SHEET 8 D11 LEU B 218 GLU B 222 1 N VAL B 221 O ASN B 246 SHEET 9 D11 LYS B 190 ASP B 194 1 N VAL B 191 O LEU B 219 SHEET 10 D11 ALA B 161 LYS B 165 1 N PHE B 162 O MET B 192 SHEET 11 D11 ARG B 130 SER B 136 1 N ALA B 135 O LYS B 163 SITE 1 AC1 3 HIS B 230 ARG B 234 ALA B 262 SITE 1 AC2 3 HIS A 230 ARG A 234 ALA A 262 SITE 1 AC3 3 PHE A 140 HIS A 168 ARG A 169 SITE 1 AC4 3 PHE B 140 HIS B 168 ARG B 169 SITE 1 AC5 3 ASN B 86 HOH B 490 HOH B 536 SITE 1 AC6 3 ASN A 86 HIS A 101 HOH A 521 SITE 1 AC7 4 HIS A 67 ALA B 363 ARG B 364 HOH B 465 SITE 1 AC8 2 PRO B 359 ARG B 360 CRYST1 160.176 160.176 82.560 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012112 0.00000