HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-FEB-07 2OZI OBSLTE 02-FEB-10 2OZI 3LAG TITLE STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A PUTATIVE TITLE 2 PROTEIN RPA4178 FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RPA4178; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS CGA009; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: CGA009; SOURCE 5 ATCC: BAA-98; SOURCE 6 GENE: RPA4178; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS APC6210, PUTATIVE PROTEIN RPA4178, RHODOPSEUDOMONAS KEYWDS 2 PALUSTRIS CGA009, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO,A.EDWARDS, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 02-FEB-10 2OZI 1 OBSLTE REVDAT 2 24-FEB-09 2OZI 1 VERSN REVDAT 1 27-MAR-07 2OZI 0 JRNL AUTH K.TAN,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO, JRNL AUTH 2 A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A PUTATIVE PROTEIN RPA4178 JRNL TITL 2 FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 56234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3858 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1610 ; 0.028 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2199 ; 2.222 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 6.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;37.108 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 289 ;14.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1223 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 725 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1090 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 294 ; 0.233 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.341 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.329 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 90 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.030 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 2.754 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1653 ; 3.190 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 624 ; 4.605 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 532 ; 5.756 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1676 ; 2.990 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 381 ;10.428 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1572 ; 6.797 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2OZI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB041778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59329 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 29.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 125.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 0.1M HEPES, 15% PEG400, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.43550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.69000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.62150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.69000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.43550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.62150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS EXPERIMENTALLY REMARK 300 UNKNOWN AT THE TIME OF DEPOSITION, HOWEVER, FROM THE REMARK 300 CRYSTAL STRUCTURE, CHAINS A AND B LIKELY FORM A DIMER. REMARK 300 SEE REMARK 350 FOR INFORMATION ON GENERATING THE REMARK 300 BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 SER B 97 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 14 O HOH A 792 1.74 REMARK 500 O HOH A 773 O HOH A 780 1.80 REMARK 500 CD ARG B 66 O HOH B 770 1.93 REMARK 500 CG ASP A 45 O HOH A 791 1.97 REMARK 500 NZ LYS A 71 O HOH A 790 1.99 REMARK 500 OD1 ASP A 14 O HOH A 783 2.00 REMARK 500 O HOH B 686 O HOH B 755 2.02 REMARK 500 C FMT A 601 O HOH A 774 2.05 REMARK 500 OE1 GLN A 61 O HOH A 766 2.07 REMARK 500 OD2 ASP A 45 O HOH A 791 2.11 REMARK 500 NH2 ARG A 57 O HOH A 786 2.17 REMARK 500 O HOH A 683 O HOH A 713 2.18 REMARK 500 C FMT B 602 O HOH B 772 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 768 O HOH B 779 2564 1.98 REMARK 500 O GLY B 96 O HOH B 769 2564 2.04 REMARK 500 O HOH A 654 O HOH B 732 2564 2.05 REMARK 500 O HOH A 795 O HOH B 713 1655 2.09 REMARK 500 O HOH B 656 O HOH B 745 4465 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE B 36 CG MSE B 36 SE -0.300 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 22 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 77 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 76.82 -154.23 REMARK 500 ASN A 13 -159.47 -114.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 32 NE2 REMARK 620 2 HIS A 34 NE2 101.5 REMARK 620 3 FMT A 601 O2 169.0 87.4 REMARK 620 4 HOH A 609 O 89.1 90.1 84.5 REMARK 620 5 FMT A 601 O1 91.3 161.5 78.6 76.7 REMARK 620 6 HIS A 76 NE2 89.0 100.1 95.8 169.8 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 37 OD2 REMARK 620 2 GLU A 15 OE2 91.2 REMARK 620 3 HOH B 767 O 90.4 178.0 REMARK 620 4 ASP A 14 OD2 124.1 78.7 101.3 REMARK 620 5 HOH A 792 O 130.8 120.5 59.0 44.5 REMARK 620 6 HOH A 653 O 77.6 83.8 95.4 152.0 137.0 REMARK 620 7 ASP A 45 OD2 156.2 94.0 84.0 79.8 64.6 79.9 REMARK 620 8 HOH A 776 O 62.2 105.9 75.8 68.2 72.8 138.4 137.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 750 O REMARK 620 2 HIS B 32 NE2 85.4 REMARK 620 3 FMT B 602 O2 79.4 92.2 REMARK 620 4 FMT B 602 O1 87.5 169.6 79.0 REMARK 620 5 HIS B 76 NE2 166.4 93.0 87.2 92.2 REMARK 620 6 HIS B 34 NE2 88.6 100.2 162.0 87.2 105.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6210 RELATED DB: TARGETDB DBREF 2OZI A 1 95 UNP Q6N272 Q6N272_RHOPA 1 95 DBREF 2OZI B 1 95 UNP Q6N272 Q6N272_RHOPA 1 95 SEQADV 2OZI GLY A 0 UNP Q6N272 CLONING ARTIFACT SEQADV 2OZI MSE A 1 UNP Q6N272 MET 1 MODIFIED RESIDUE SEQADV 2OZI MSE A 36 UNP Q6N272 MET 36 MODIFIED RESIDUE SEQADV 2OZI MSE A 43 UNP Q6N272 MET 43 MODIFIED RESIDUE SEQADV 2OZI MSE A 48 UNP Q6N272 MET 48 MODIFIED RESIDUE SEQADV 2OZI GLY A 96 UNP Q6N272 CLONING ARTIFACT SEQADV 2OZI SER A 97 UNP Q6N272 CLONING ARTIFACT SEQADV 2OZI GLY B 0 UNP Q6N272 CLONING ARTIFACT SEQADV 2OZI MSE B 1 UNP Q6N272 MET 1 MODIFIED RESIDUE SEQADV 2OZI MSE B 36 UNP Q6N272 MET 36 MODIFIED RESIDUE SEQADV 2OZI MSE B 43 UNP Q6N272 MET 43 MODIFIED RESIDUE SEQADV 2OZI MSE B 48 UNP Q6N272 MET 48 MODIFIED RESIDUE SEQADV 2OZI GLY B 96 UNP Q6N272 CLONING ARTIFACT SEQADV 2OZI SER B 97 UNP Q6N272 CLONING ARTIFACT SEQRES 1 A 98 GLY MSE THR VAL ALA ALA LYS SER GLU ILE GLN ILE ASP SEQRES 2 A 98 ASN ASP GLU VAL ARG VAL THR GLU TRP ARG LEU PRO PRO SEQRES 3 A 98 GLY SER ALA THR GLY HIS HIS THR HIS GLY MSE ASP TYR SEQRES 4 A 98 VAL VAL VAL PRO MSE ALA ASP GLY GLU MSE THR ILE VAL SEQRES 5 A 98 ALA PRO ASP GLY THR ARG SER LEU ALA GLN LEU LYS THR SEQRES 6 A 98 GLY ARG SER TYR ALA ARG LYS ALA GLY VAL GLN HIS ASP SEQRES 7 A 98 VAL ARG ASN GLU SER THR ALA GLU ILE VAL PHE LEU GLU SEQRES 8 A 98 ILE GLU LEU LYS ALA GLY SER SEQRES 1 B 98 GLY MSE THR VAL ALA ALA LYS SER GLU ILE GLN ILE ASP SEQRES 2 B 98 ASN ASP GLU VAL ARG VAL THR GLU TRP ARG LEU PRO PRO SEQRES 3 B 98 GLY SER ALA THR GLY HIS HIS THR HIS GLY MSE ASP TYR SEQRES 4 B 98 VAL VAL VAL PRO MSE ALA ASP GLY GLU MSE THR ILE VAL SEQRES 5 B 98 ALA PRO ASP GLY THR ARG SER LEU ALA GLN LEU LYS THR SEQRES 6 B 98 GLY ARG SER TYR ALA ARG LYS ALA GLY VAL GLN HIS ASP SEQRES 7 B 98 VAL ARG ASN GLU SER THR ALA GLU ILE VAL PHE LEU GLU SEQRES 8 B 98 ILE GLU LEU LYS ALA GLY SER MODRES 2OZI MSE A 1 MET SELENOMETHIONINE MODRES 2OZI MSE A 36 MET SELENOMETHIONINE MODRES 2OZI MSE A 43 MET SELENOMETHIONINE MODRES 2OZI MSE A 48 MET SELENOMETHIONINE MODRES 2OZI MSE B 1 MET SELENOMETHIONINE MODRES 2OZI MSE B 36 MET SELENOMETHIONINE MODRES 2OZI MSE B 43 MET SELENOMETHIONINE MODRES 2OZI MSE B 48 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 36 8 HET MSE A 43 8 HET MSE A 48 13 HET MSE B 1 13 HET MSE B 36 8 HET MSE B 43 8 HET MSE B 48 16 HET NI A 501 1 HET NI B 502 1 HET CA A 503 1 HET FMT A 601 3 HET FMT B 602 3 HET FMT B 603 3 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM CA CALCIUM ION HETNAM FMT FORMIC ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 NI 2(NI 2+) FORMUL 5 CA CA 2+ FORMUL 6 FMT 3(C H2 O2) FORMUL 9 HOH *372(H2 O) SHEET 1 A 4 VAL A 3 ALA A 4 0 SHEET 2 A 4 SER A 27 ALA A 28 1 O ALA A 28 N VAL A 3 SHEET 3 A 4 GLN A 75 ASN A 80 -1 O ASN A 80 N SER A 27 SHEET 4 A 4 HIS A 32 THR A 33 -1 N HIS A 32 O HIS A 76 SHEET 1 B 5 VAL A 3 ALA A 4 0 SHEET 2 B 5 SER A 27 ALA A 28 1 O ALA A 28 N VAL A 3 SHEET 3 B 5 GLN A 75 ASN A 80 -1 O ASN A 80 N SER A 27 SHEET 4 B 5 GLY A 46 VAL A 51 -1 N VAL A 51 O ASP A 77 SHEET 5 B 5 ARG A 57 LEU A 62 -1 O SER A 58 N ILE A 50 SHEET 1 C 5 LYS A 6 ASP A 12 0 SHEET 2 C 5 VAL A 16 LEU A 23 -1 O GLU A 20 N GLU A 8 SHEET 3 C 5 ILE A 86 LEU A 93 -1 O GLU A 92 N ARG A 17 SHEET 4 C 5 TYR A 38 PRO A 42 -1 N VAL A 41 O LEU A 89 SHEET 5 C 5 TYR A 68 ARG A 70 -1 O ARG A 70 N TYR A 38 SHEET 1 D 2 VAL B 3 ALA B 4 0 SHEET 2 D 2 SER B 27 ALA B 28 1 O ALA B 28 N VAL B 3 SHEET 1 E 5 LYS B 6 ASP B 12 0 SHEET 2 E 5 VAL B 16 LEU B 23 -1 O GLU B 20 N GLU B 8 SHEET 3 E 5 ILE B 86 LEU B 93 -1 O PHE B 88 N TRP B 21 SHEET 4 E 5 TYR B 38 PRO B 42 -1 N VAL B 39 O ILE B 91 SHEET 5 E 5 TYR B 68 ARG B 70 -1 O ARG B 70 N TYR B 38 SHEET 1 F 4 HIS B 32 THR B 33 0 SHEET 2 F 4 GLN B 75 ARG B 79 -1 O HIS B 76 N HIS B 32 SHEET 3 F 4 GLY B 46 VAL B 51 -1 N VAL B 51 O ASP B 77 SHEET 4 F 4 ARG B 57 LEU B 62 -1 O SER B 58 N ILE B 50 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N THR A 2 1555 1555 1.32 LINK C GLY A 35 N MSE A 36 1555 1555 1.35 LINK C MSE A 36 N ASP A 37 1555 1555 1.34 LINK C PRO A 42 N MSE A 43 1555 1555 1.32 LINK C MSE A 43 N ALA A 44 1555 1555 1.34 LINK C GLU A 47 N MSE A 48 1555 1555 1.30 LINK C MSE A 48 N THR A 49 1555 1555 1.32 LINK NI NI A 501 NE2 HIS A 32 1555 1555 2.09 LINK NI NI A 501 NE2 HIS A 34 1555 1555 2.02 LINK NI NI A 501 O2 FMT A 601 1555 1555 2.00 LINK NI NI A 501 O HOH A 609 1555 1555 2.44 LINK NI NI A 501 O1 FMT A 601 1555 1555 2.11 LINK NI NI A 501 NE2 HIS A 76 1555 1555 2.09 LINK CA CA A 503 OD2 ASP B 37 1555 1555 2.38 LINK CA CA A 503 OE2 GLU A 15 1555 1555 2.38 LINK CA CA A 503 O HOH B 767 1555 1555 2.39 LINK CA CA A 503 OD2 ASP A 14 1555 1555 2.43 LINK CA CA A 503 O HOH A 792 1555 1555 2.11 LINK C GLY B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N THR B 2 1555 1555 1.35 LINK C GLY B 35 N MSE B 36 1555 1555 1.36 LINK C MSE B 36 N ASP B 37 1555 1555 1.35 LINK C PRO B 42 N MSE B 43 1555 1555 1.31 LINK C MSE B 43 N ALA B 44 1555 1555 1.33 LINK C GLU B 47 N AMSE B 48 1555 1555 1.33 LINK C GLU B 47 N BMSE B 48 1555 1555 1.32 LINK C AMSE B 48 N THR B 49 1555 1555 1.34 LINK C BMSE B 48 N THR B 49 1555 1555 1.32 LINK NI NI B 502 O HOH B 750 1555 1555 2.30 LINK NI NI B 502 NE2 HIS B 32 1555 1555 2.05 LINK NI NI B 502 O2 FMT B 602 1555 1555 2.11 LINK NI NI B 502 O1 FMT B 602 1555 1555 2.03 LINK NI NI B 502 NE2 HIS B 76 1555 1555 1.99 LINK NI NI B 502 NE2 HIS B 34 1555 1555 2.11 LINK CA CA A 503 O HOH A 653 1555 2564 2.38 LINK CA CA A 503 OD2 ASP A 45 1555 2564 2.41 LINK CA CA A 503 O HOH A 776 1555 2564 2.54 CISPEP 1 ALA B 95 GLY B 96 0 16.83 SITE 1 AC1 5 HIS A 32 HIS A 34 HIS A 76 FMT A 601 SITE 2 AC1 5 HOH A 609 SITE 1 AC2 5 HIS B 32 HIS B 34 HIS B 76 FMT B 602 SITE 2 AC2 5 HOH B 750 SITE 1 AC3 8 ASP A 14 GLU A 15 ASP A 45 HOH A 653 SITE 2 AC3 8 HOH A 776 HOH A 792 ASP B 37 HOH B 767 SITE 1 AC4 10 HIS A 32 HIS A 34 TYR A 38 HIS A 76 SITE 2 AC4 10 VAL A 78 GLU A 90 NI A 501 HOH A 609 SITE 3 AC4 10 HOH A 648 HOH A 774 SITE 1 AC5 10 HIS B 32 HIS B 34 TYR B 38 HIS B 76 SITE 2 AC5 10 VAL B 78 GLU B 90 NI B 502 HOH B 633 SITE 3 AC5 10 HOH B 750 HOH B 772 SITE 1 AC6 10 ASN A 13 ASP A 14 GLU A 15 HOH A 776 SITE 2 AC6 10 HOH A 783 ASP B 37 ALA B 69 ARG B 70 SITE 3 AC6 10 HOH B 651 HOH B 760 CRYST1 42.871 59.243 65.380 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023326 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015295 0.00000