data_2OZJ # _entry.id 2OZJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2OZJ pdb_00002ozj 10.2210/pdb2ozj/pdb RCSB RCSB041779 ? ? WWPDB D_1000041779 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 366882 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2OZJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-02-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Cupin 2, conserved barrel (EAT53321.1) from Desulfitobacterium hafniense DCB-2 at 1.60 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2OZJ _cell.length_a 40.930 _cell.length_b 69.790 _cell.length_c 150.520 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2OZJ _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cupin 2, conserved barrel' 12985.230 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 135 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)ARLKNLPQERPLPLASLIEARENQVLS(MSE)ALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVIT FDDQKIDLVPEDVL(MSE)VPAHKIHAIAGKGRFK(MSE)LQITLIDEER ; _entity_poly.pdbx_seq_one_letter_code_can ;GMARLKNLPQERPLPLASLIEARENQVLSMALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQKIDL VPEDVLMVPAHKIHAIAGKGRFKMLQITLIDEER ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 366882 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ALA n 1 4 ARG n 1 5 LEU n 1 6 LYS n 1 7 ASN n 1 8 LEU n 1 9 PRO n 1 10 GLN n 1 11 GLU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PRO n 1 16 LEU n 1 17 ALA n 1 18 SER n 1 19 LEU n 1 20 ILE n 1 21 GLU n 1 22 ALA n 1 23 ARG n 1 24 GLU n 1 25 ASN n 1 26 GLN n 1 27 VAL n 1 28 LEU n 1 29 SER n 1 30 MSE n 1 31 ALA n 1 32 LEU n 1 33 ALA n 1 34 GLN n 1 35 SER n 1 36 ASP n 1 37 ARG n 1 38 VAL n 1 39 GLN n 1 40 ILE n 1 41 SER n 1 42 LEU n 1 43 PHE n 1 44 SER n 1 45 PHE n 1 46 ALA n 1 47 ASP n 1 48 GLY n 1 49 GLU n 1 50 SER n 1 51 VAL n 1 52 SER n 1 53 GLU n 1 54 GLU n 1 55 GLU n 1 56 TYR n 1 57 PHE n 1 58 GLY n 1 59 ASP n 1 60 THR n 1 61 LEU n 1 62 TYR n 1 63 LEU n 1 64 ILE n 1 65 LEU n 1 66 GLN n 1 67 GLY n 1 68 GLU n 1 69 ALA n 1 70 VAL n 1 71 ILE n 1 72 THR n 1 73 PHE n 1 74 ASP n 1 75 ASP n 1 76 GLN n 1 77 LYS n 1 78 ILE n 1 79 ASP n 1 80 LEU n 1 81 VAL n 1 82 PRO n 1 83 GLU n 1 84 ASP n 1 85 VAL n 1 86 LEU n 1 87 MSE n 1 88 VAL n 1 89 PRO n 1 90 ALA n 1 91 HIS n 1 92 LYS n 1 93 ILE n 1 94 HIS n 1 95 ALA n 1 96 ILE n 1 97 ALA n 1 98 GLY n 1 99 LYS n 1 100 GLY n 1 101 ARG n 1 102 PHE n 1 103 LYS n 1 104 MSE n 1 105 LEU n 1 106 GLN n 1 107 ILE n 1 108 THR n 1 109 LEU n 1 110 ILE n 1 111 ASP n 1 112 GLU n 1 113 GLU n 1 114 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Desulfitobacterium _entity_src_gen.pdbx_gene_src_gene 'EAT53321.1, Dhaf_2995' _entity_src_gen.gene_src_species 'Desulfitobacterium hafniense' _entity_src_gen.gene_src_strain DCB-2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfitobacterium hafniense' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272564 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q18ZY6_DESHD _struct_ref.pdbx_db_accession Q18ZY6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MARLKNLPQERPLPLASLIEARENQVLSMALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQKIDLV PEDVLMVPAHKIHAIAGKGRFKMLQITLIDEER ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2OZJ A 2 ? 114 ? Q18ZY6 1 ? 113 ? 1 113 2 1 2OZJ B 2 ? 114 ? Q18ZY6 1 ? 113 ? 1 113 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2OZJ GLY A 1 ? UNP Q18ZY6 ? ? 'expression tag' 0 1 1 2OZJ MSE A 2 ? UNP Q18ZY6 MET 1 'modified residue' 1 2 1 2OZJ MSE A 30 ? UNP Q18ZY6 MET 29 'modified residue' 29 3 1 2OZJ MSE A 87 ? UNP Q18ZY6 MET 86 'modified residue' 86 4 1 2OZJ MSE A 104 ? UNP Q18ZY6 MET 103 'modified residue' 103 5 2 2OZJ GLY B 1 ? UNP Q18ZY6 ? ? 'expression tag' 0 6 2 2OZJ MSE B 2 ? UNP Q18ZY6 MET 1 'modified residue' 1 7 2 2OZJ MSE B 30 ? UNP Q18ZY6 MET 29 'modified residue' 29 8 2 2OZJ MSE B 87 ? UNP Q18ZY6 MET 86 'modified residue' 86 9 2 2OZJ MSE B 104 ? UNP Q18ZY6 MET 103 'modified residue' 103 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2OZJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;NANODROP, 0.25M Sodium chloride, 33.0% 2-methyl-2,4-pentanediol, 0.1M Tris-HCl pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2007-01-06 _diffrn_detector.details 'Flat mirror (vertical focusing)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97941 1.0 3 0.97917 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.91837, 0.97941, 0.97917' # _reflns.entry_id 2OZJ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.880 _reflns.d_resolution_high 1.600 _reflns.number_obs 28987 _reflns.number_all ? _reflns.percent_possible_obs 99.300 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.160 _reflns.B_iso_Wilson_estimate 22.80 _reflns.pdbx_redundancy 7.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.60 1.66 97.3 0.675 ? 2.1 ? 97.3 ? ? 20962 ? ? 1 1 1.66 1.72 99.8 0.526 ? 2.7 ? 99.8 ? ? 18925 ? ? 2 1 1.72 1.80 99.7 0.372 ? 3.8 ? 99.7 ? ? 21490 ? ? 3 1 1.80 1.90 99.7 0.252 ? 5.5 ? 99.7 ? ? 22010 ? ? 4 1 1.90 2.02 99.8 0.163 ? 8.3 ? 99.8 ? ? 21232 ? ? 5 1 2.02 2.17 99.9 0.102 ? 12.4 ? 99.9 ? ? 20140 ? ? 6 1 2.17 2.39 100.0 0.07 ? 16.6 ? 100.0 ? ? 21424 ? ? 7 1 2.39 2.73 99.8 0.054 ? 21.4 ? 99.8 ? ? 20862 ? ? 8 1 2.73 3.44 99.6 0.037 ? 29.6 ? 99.6 ? ? 21054 ? ? 9 1 3.44 28.9 98.1 0.023 ? 39.2 ? 98.1 ? ? 20620 ? ? 10 1 # _refine.entry_id 2OZJ _refine.ls_number_reflns_obs 28943 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.88 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.53 _refine.ls_R_factor_obs 0.18374 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1822 _refine.ls_R_factor_R_free 0.21269 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1475 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.B_iso_mean 15.049 _refine.aniso_B[1][1] 0.29 _refine.aniso_B[2][2] 1.37 _refine.aniso_B[3][3] -1.66 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. THE GEOMETRY OF THE SEVERAL REGIONS ARE POOR DUE TO DISORDER. THESE REGIONS ARE RESIDUES 3-5, 19-30, 47-51 AND 108-110 IN A AND B SUBUNITS. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.093 _refine.pdbx_overall_ESU_R_Free 0.092 _refine.overall_SU_ML 0.073 _refine.overall_SU_B 4.453 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1674 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 1815 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 28.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1840 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1226 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.748 1.995 ? 2509 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.966 3.000 ? 3032 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.183 5.000 ? 245 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.489 25.135 ? 74 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.455 15.000 ? 329 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.374 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 298 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 2074 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 343 'X-RAY DIFFRACTION' ? r_nbd_refined 0.217 0.200 ? 277 'X-RAY DIFFRACTION' ? r_nbd_other 0.203 0.200 ? 1277 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.169 0.200 ? 852 'X-RAY DIFFRACTION' ? r_nbtor_other 0.089 0.200 ? 1088 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.176 0.200 ? 105 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.002 0.200 ? 1 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.283 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.292 0.200 ? 60 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.132 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.300 3.000 ? 1246 'X-RAY DIFFRACTION' ? r_mcbond_other 0.739 3.000 ? 470 'X-RAY DIFFRACTION' ? r_mcangle_it 3.137 5.000 ? 1916 'X-RAY DIFFRACTION' ? r_scbond_it 5.047 8.000 ? 680 'X-RAY DIFFRACTION' ? r_scangle_it 7.412 11.000 ? 591 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 1237 0.78 0.50 'medium positional' 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 A 1237 1.41 2.00 'medium thermal' 1 'X-RAY DIFFRACTION' 2 ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.640 _refine_ls_shell.number_reflns_R_work 1987 _refine_ls_shell.R_factor_R_work 0.244 _refine_ls_shell.percent_reflns_obs 97.33 _refine_ls_shell.R_factor_R_free 0.297 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 92 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 1 A 110 1 4 A MSE 2 ? A ASP 111 ? 1 ? 2 B 2 B 110 2 4 B ALA 3 ? B ASP 111 ? 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2OZJ _struct.title 'CRYSTAL STRUCTURE OF A CUPIN SUPERFAMILY PROTEIN (DSY2733) FROM DESULFITOBACTERIUM HAFNIENSE DCB-2 AT 1.60 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;CUPIN SUPERFAMILY PROTEIN, CUPIN 2, CONSERVED BARREL, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 2OZJ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS A TRIMER IN SOLUTION. HOWEVER, THE PISA SERVER PREDICTS THE DIMER TO BE STABLE. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 15 ? ILE A 20 ? PRO A 14 ILE A 19 5 ? 6 HELX_P HELX_P2 2 PRO B 15 ? ILE B 20 ? PRO B 14 ILE B 19 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A ALA 3 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? A SER 29 C ? ? ? 1_555 A MSE 30 N ? ? A SER 28 A MSE 29 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale3 covale both ? A MSE 30 C ? ? ? 1_555 A ALA 31 N ? ? A MSE 29 A ALA 30 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A LEU 86 C ? ? ? 1_555 A MSE 87 N ? ? A LEU 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A MSE 87 C ? ? ? 1_555 A VAL 88 N ? ? A MSE 86 A VAL 87 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? A LYS 103 C ? ? ? 1_555 A MSE 104 N B ? A LYS 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale7 covale both ? A LYS 103 C ? ? ? 1_555 A MSE 104 N A ? A LYS 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? A MSE 104 C B ? ? 1_555 A LEU 105 N ? ? A MSE 103 A LEU 104 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? A MSE 104 C A ? ? 1_555 A LEU 105 N ? ? A MSE 103 A LEU 104 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale10 covale both ? B SER 29 C ? ? ? 1_555 B MSE 30 N B ? B SER 28 B MSE 29 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale11 covale both ? B SER 29 C ? ? ? 1_555 B MSE 30 N A ? B SER 28 B MSE 29 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? B MSE 30 C B ? ? 1_555 B ALA 31 N ? ? B MSE 29 B ALA 30 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale13 covale both ? B MSE 30 C A ? ? 1_555 B ALA 31 N ? ? B MSE 29 B ALA 30 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? B LEU 86 C ? ? ? 1_555 B MSE 87 N ? ? B LEU 85 B MSE 86 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale15 covale both ? B MSE 87 C ? ? ? 1_555 B VAL 88 N ? ? B MSE 86 B VAL 87 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale16 covale both ? B LYS 103 C ? ? ? 1_555 B MSE 104 N ? ? B LYS 102 B MSE 103 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale17 covale both ? B MSE 104 C ? ? ? 1_555 B LEU 105 N ? ? B MSE 103 B LEU 104 1_555 ? ? ? ? ? ? ? 1.314 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ILE _struct_mon_prot_cis.label_seq_id 110 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ILE _struct_mon_prot_cis.auth_seq_id 109 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 ASP _struct_mon_prot_cis.pdbx_label_seq_id_2 111 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASP _struct_mon_prot_cis.pdbx_auth_seq_id_2 110 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 10.94 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 9 ? C ? 7 ? D ? 9 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel D 6 7 ? anti-parallel D 7 8 ? anti-parallel D 8 9 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 4 ? LEU A 5 ? ARG A 3 LEU A 4 A 2 ALA A 33 ? GLN A 34 ? ALA A 32 GLN A 33 B 1 SER B 50 ? GLU B 54 ? SER B 49 GLU B 53 B 2 HIS B 94 ? LEU B 109 ? HIS B 93 LEU B 108 B 3 THR B 60 ? PHE B 73 ? THR B 59 PHE B 72 B 4 VAL B 85 ? VAL B 88 ? VAL B 84 VAL B 87 B 5 VAL A 27 ? ALA A 31 ? VAL A 26 ALA A 30 B 6 VAL A 38 ? ALA A 46 ? VAL A 37 ALA A 45 B 7 ALA A 95 ? LEU A 109 ? ALA A 94 LEU A 108 B 8 THR A 60 ? PHE A 73 ? THR A 59 PHE A 72 B 9 GLN A 76 ? LEU A 80 ? GLN A 75 LEU A 79 C 1 SER B 50 ? GLU B 54 ? SER B 49 GLU B 53 C 2 HIS B 94 ? LEU B 109 ? HIS B 93 LEU B 108 C 3 THR B 60 ? PHE B 73 ? THR B 59 PHE B 72 C 4 GLN B 76 ? LEU B 80 ? GLN B 75 LEU B 79 C 5 VAL A 27 ? ALA A 31 ? VAL A 26 ALA A 30 C 6 VAL A 38 ? ALA A 46 ? VAL A 37 ALA A 45 C 7 VAL B 27 ? ALA B 31 ? VAL B 26 ALA B 30 D 1 SER B 50 ? GLU B 54 ? SER B 49 GLU B 53 D 2 HIS B 94 ? LEU B 109 ? HIS B 93 LEU B 108 D 3 VAL B 38 ? PHE B 45 ? VAL B 37 PHE B 44 D 4 VAL B 27 ? ALA B 31 ? VAL B 26 ALA B 30 D 5 VAL A 27 ? ALA A 31 ? VAL A 26 ALA A 30 D 6 VAL A 38 ? ALA A 46 ? VAL A 37 ALA A 45 D 7 ALA A 95 ? LEU A 109 ? ALA A 94 LEU A 108 D 8 THR A 60 ? PHE A 73 ? THR A 59 PHE A 72 D 9 VAL A 85 ? VAL A 88 ? VAL A 84 VAL A 87 E 1 ARG B 4 ? LEU B 5 ? ARG B 3 LEU B 4 E 2 ALA B 33 ? GLN B 34 ? ALA B 32 GLN B 33 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 4 ? N ARG A 3 O GLN A 34 ? O GLN A 33 B 1 2 N GLU B 54 ? N GLU B 53 O HIS B 94 ? O HIS B 93 B 2 3 O ILE B 107 ? O ILE B 106 N LEU B 61 ? N LEU B 60 B 3 4 N THR B 60 ? N THR B 59 O VAL B 88 ? O VAL B 87 B 5 6 N MSE A 30 ? N MSE A 29 O LEU A 42 ? O LEU A 41 B 6 7 N PHE A 43 ? N PHE A 42 O MSE A 104 ? O MSE A 103 B 7 8 O ALA A 95 ? O ALA A 94 N THR A 72 ? N THR A 71 B 8 9 N ILE A 71 ? N ILE A 70 O ILE A 78 ? O ILE A 77 C 1 2 N GLU B 54 ? N GLU B 53 O HIS B 94 ? O HIS B 93 C 2 3 O ILE B 107 ? O ILE B 106 N LEU B 61 ? N LEU B 60 C 3 4 N ILE B 71 ? N ILE B 70 O ILE B 78 ? O ILE B 77 C 5 6 N MSE A 30 ? N MSE A 29 O LEU A 42 ? O LEU A 41 D 1 2 N GLU B 54 ? N GLU B 53 O HIS B 94 ? O HIS B 93 D 2 3 O PHE B 102 ? O PHE B 101 N PHE B 45 ? N PHE B 44 D 3 4 O LEU B 42 ? O LEU B 41 N MSE B 30 ? N MSE B 29 D 4 5 O SER B 29 ? O SER B 28 N VAL A 27 ? N VAL A 26 D 5 6 N MSE A 30 ? N MSE A 29 O LEU A 42 ? O LEU A 41 D 6 7 N PHE A 43 ? N PHE A 42 O MSE A 104 ? O MSE A 103 D 7 8 O ALA A 95 ? O ALA A 94 N THR A 72 ? N THR A 71 D 8 9 N TYR A 62 ? N TYR A 61 O LEU A 86 ? O LEU A 85 E 1 2 N ARG B 4 ? N ARG B 3 O GLN B 34 ? O GLN B 33 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 114 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE GOL B 114' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG B 12 ? ARG B 11 . ? 1_555 ? 2 AC1 4 GLN B 76 ? GLN B 75 . ? 1_655 ? 3 AC1 4 HOH E . ? HOH B 146 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH B 154 . ? 1_555 ? # _atom_sites.entry_id 2OZJ _atom_sites.fract_transf_matrix[1][1] 0.024432 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014329 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006644 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ALA 3 2 2 ALA ALA A . n A 1 4 ARG 4 3 3 ARG ARG A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 ASN 7 6 6 ASN ASN A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 PRO 9 8 8 PRO PRO A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 ARG 12 11 11 ARG ARG A . n A 1 13 PRO 13 12 12 PRO PRO A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 PRO 15 14 14 PRO PRO A . n A 1 16 LEU 16 15 15 LEU LEU A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 ILE 20 19 19 ILE ILE A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 ARG 23 22 22 ARG ARG A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 ASN 25 24 24 ASN ASN A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 LEU 28 27 27 LEU LEU A . n A 1 29 SER 29 28 28 SER SER A . n A 1 30 MSE 30 29 29 MSE MSE A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 GLN 34 33 33 GLN GLN A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 ASP 36 35 35 ASP ASP A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 ILE 40 39 39 ILE ILE A . n A 1 41 SER 41 40 40 SER SER A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 SER 44 43 43 SER SER A . n A 1 45 PHE 45 44 44 PHE PHE A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 GLU 53 52 52 GLU GLU A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 TYR 56 55 55 TYR TYR A . n A 1 57 PHE 57 56 56 PHE PHE A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 TYR 62 61 61 TYR TYR A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 GLY 67 66 66 GLY GLY A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 ILE 71 70 70 ILE ILE A . n A 1 72 THR 72 71 71 THR THR A . n A 1 73 PHE 73 72 72 PHE PHE A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 ASP 75 74 74 ASP ASP A . n A 1 76 GLN 76 75 75 GLN GLN A . n A 1 77 LYS 77 76 76 LYS LYS A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 ASP 79 78 78 ASP ASP A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 PRO 82 81 81 PRO PRO A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 MSE 87 86 86 MSE MSE A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 PRO 89 88 88 PRO PRO A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 HIS 91 90 90 HIS HIS A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 ALA 95 94 94 ALA ALA A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 GLY 98 97 97 GLY GLY A . n A 1 99 LYS 99 98 98 LYS LYS A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 ARG 101 100 100 ARG ARG A . n A 1 102 PHE 102 101 101 PHE PHE A . n A 1 103 LYS 103 102 102 LYS LYS A . n A 1 104 MSE 104 103 103 MSE MSE A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 GLN 106 105 105 GLN GLN A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 ASP 111 110 110 ASP ASP A . n A 1 112 GLU 112 111 ? ? ? A . n A 1 113 GLU 113 112 ? ? ? A . n A 1 114 ARG 114 113 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 ALA 3 2 2 ALA ALA B . n B 1 4 ARG 4 3 3 ARG ARG B . n B 1 5 LEU 5 4 4 LEU LEU B . n B 1 6 LYS 6 5 5 LYS LYS B . n B 1 7 ASN 7 6 6 ASN ASN B . n B 1 8 LEU 8 7 7 LEU LEU B . n B 1 9 PRO 9 8 8 PRO PRO B . n B 1 10 GLN 10 9 9 GLN GLN B . n B 1 11 GLU 11 10 10 GLU GLU B . n B 1 12 ARG 12 11 11 ARG ARG B . n B 1 13 PRO 13 12 12 PRO PRO B . n B 1 14 LEU 14 13 13 LEU LEU B . n B 1 15 PRO 15 14 14 PRO PRO B . n B 1 16 LEU 16 15 15 LEU LEU B . n B 1 17 ALA 17 16 16 ALA ALA B . n B 1 18 SER 18 17 17 SER SER B . n B 1 19 LEU 19 18 18 LEU LEU B . n B 1 20 ILE 20 19 19 ILE ILE B . n B 1 21 GLU 21 20 20 GLU GLU B . n B 1 22 ALA 22 21 21 ALA ALA B . n B 1 23 ARG 23 22 22 ARG ARG B . n B 1 24 GLU 24 23 23 GLU GLU B . n B 1 25 ASN 25 24 24 ASN ASN B . n B 1 26 GLN 26 25 25 GLN GLN B . n B 1 27 VAL 27 26 26 VAL VAL B . n B 1 28 LEU 28 27 27 LEU LEU B . n B 1 29 SER 29 28 28 SER SER B . n B 1 30 MSE 30 29 29 MSE MSE B . n B 1 31 ALA 31 30 30 ALA ALA B . n B 1 32 LEU 32 31 31 LEU LEU B . n B 1 33 ALA 33 32 32 ALA ALA B . n B 1 34 GLN 34 33 33 GLN GLN B . n B 1 35 SER 35 34 34 SER SER B . n B 1 36 ASP 36 35 35 ASP ASP B . n B 1 37 ARG 37 36 36 ARG ARG B . n B 1 38 VAL 38 37 37 VAL VAL B . n B 1 39 GLN 39 38 38 GLN GLN B . n B 1 40 ILE 40 39 39 ILE ILE B . n B 1 41 SER 41 40 40 SER SER B . n B 1 42 LEU 42 41 41 LEU LEU B . n B 1 43 PHE 43 42 42 PHE PHE B . n B 1 44 SER 44 43 43 SER SER B . n B 1 45 PHE 45 44 44 PHE PHE B . n B 1 46 ALA 46 45 45 ALA ALA B . n B 1 47 ASP 47 46 46 ASP ASP B . n B 1 48 GLY 48 47 47 GLY GLY B . n B 1 49 GLU 49 48 48 GLU GLU B . n B 1 50 SER 50 49 49 SER SER B . n B 1 51 VAL 51 50 50 VAL VAL B . n B 1 52 SER 52 51 51 SER SER B . n B 1 53 GLU 53 52 52 GLU GLU B . n B 1 54 GLU 54 53 53 GLU GLU B . n B 1 55 GLU 55 54 54 GLU GLU B . n B 1 56 TYR 56 55 55 TYR TYR B . n B 1 57 PHE 57 56 56 PHE PHE B . n B 1 58 GLY 58 57 57 GLY GLY B . n B 1 59 ASP 59 58 58 ASP ASP B . n B 1 60 THR 60 59 59 THR THR B . n B 1 61 LEU 61 60 60 LEU LEU B . n B 1 62 TYR 62 61 61 TYR TYR B . n B 1 63 LEU 63 62 62 LEU LEU B . n B 1 64 ILE 64 63 63 ILE ILE B . n B 1 65 LEU 65 64 64 LEU LEU B . n B 1 66 GLN 66 65 65 GLN GLN B . n B 1 67 GLY 67 66 66 GLY GLY B . n B 1 68 GLU 68 67 67 GLU GLU B . n B 1 69 ALA 69 68 68 ALA ALA B . n B 1 70 VAL 70 69 69 VAL VAL B . n B 1 71 ILE 71 70 70 ILE ILE B . n B 1 72 THR 72 71 71 THR THR B . n B 1 73 PHE 73 72 72 PHE PHE B . n B 1 74 ASP 74 73 73 ASP ASP B . n B 1 75 ASP 75 74 74 ASP ASP B . n B 1 76 GLN 76 75 75 GLN GLN B . n B 1 77 LYS 77 76 76 LYS LYS B . n B 1 78 ILE 78 77 77 ILE ILE B . n B 1 79 ASP 79 78 78 ASP ASP B . n B 1 80 LEU 80 79 79 LEU LEU B . n B 1 81 VAL 81 80 80 VAL VAL B . n B 1 82 PRO 82 81 81 PRO PRO B . n B 1 83 GLU 83 82 82 GLU GLU B . n B 1 84 ASP 84 83 83 ASP ASP B . n B 1 85 VAL 85 84 84 VAL VAL B . n B 1 86 LEU 86 85 85 LEU LEU B . n B 1 87 MSE 87 86 86 MSE MSE B . n B 1 88 VAL 88 87 87 VAL VAL B . n B 1 89 PRO 89 88 88 PRO PRO B . n B 1 90 ALA 90 89 89 ALA ALA B . n B 1 91 HIS 91 90 90 HIS HIS B . n B 1 92 LYS 92 91 91 LYS LYS B . n B 1 93 ILE 93 92 92 ILE ILE B . n B 1 94 HIS 94 93 93 HIS HIS B . n B 1 95 ALA 95 94 94 ALA ALA B . n B 1 96 ILE 96 95 95 ILE ILE B . n B 1 97 ALA 97 96 96 ALA ALA B . n B 1 98 GLY 98 97 97 GLY GLY B . n B 1 99 LYS 99 98 98 LYS LYS B . n B 1 100 GLY 100 99 99 GLY GLY B . n B 1 101 ARG 101 100 100 ARG ARG B . n B 1 102 PHE 102 101 101 PHE PHE B . n B 1 103 LYS 103 102 102 LYS LYS B . n B 1 104 MSE 104 103 103 MSE MSE B . n B 1 105 LEU 105 104 104 LEU LEU B . n B 1 106 GLN 106 105 105 GLN GLN B . n B 1 107 ILE 107 106 106 ILE ILE B . n B 1 108 THR 108 107 107 THR THR B . n B 1 109 LEU 109 108 108 LEU LEU B . n B 1 110 ILE 110 109 109 ILE ILE B . n B 1 111 ASP 111 110 110 ASP ASP B . n B 1 112 GLU 112 111 ? ? ? B . n B 1 113 GLU 113 112 ? ? ? B . n B 1 114 ARG 114 113 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 114 1 GOL GOL B . D 3 HOH 1 114 4 HOH HOH A . D 3 HOH 2 115 8 HOH HOH A . D 3 HOH 3 116 10 HOH HOH A . D 3 HOH 4 117 18 HOH HOH A . D 3 HOH 5 118 22 HOH HOH A . D 3 HOH 6 119 25 HOH HOH A . D 3 HOH 7 120 30 HOH HOH A . D 3 HOH 8 121 31 HOH HOH A . D 3 HOH 9 122 35 HOH HOH A . D 3 HOH 10 123 38 HOH HOH A . D 3 HOH 11 124 39 HOH HOH A . D 3 HOH 12 125 40 HOH HOH A . D 3 HOH 13 126 41 HOH HOH A . D 3 HOH 14 127 42 HOH HOH A . D 3 HOH 15 128 44 HOH HOH A . D 3 HOH 16 129 45 HOH HOH A . D 3 HOH 17 130 47 HOH HOH A . D 3 HOH 18 131 48 HOH HOH A . D 3 HOH 19 132 50 HOH HOH A . D 3 HOH 20 133 57 HOH HOH A . D 3 HOH 21 134 59 HOH HOH A . D 3 HOH 22 135 69 HOH HOH A . D 3 HOH 23 136 71 HOH HOH A . D 3 HOH 24 137 72 HOH HOH A . D 3 HOH 25 138 74 HOH HOH A . D 3 HOH 26 139 77 HOH HOH A . D 3 HOH 27 140 79 HOH HOH A . D 3 HOH 28 141 81 HOH HOH A . D 3 HOH 29 142 85 HOH HOH A . D 3 HOH 30 143 86 HOH HOH A . D 3 HOH 31 144 87 HOH HOH A . D 3 HOH 32 145 97 HOH HOH A . D 3 HOH 33 146 98 HOH HOH A . D 3 HOH 34 147 99 HOH HOH A . D 3 HOH 35 148 103 HOH HOH A . D 3 HOH 36 149 104 HOH HOH A . D 3 HOH 37 150 105 HOH HOH A . D 3 HOH 38 151 107 HOH HOH A . D 3 HOH 39 152 114 HOH HOH A . D 3 HOH 40 153 115 HOH HOH A . D 3 HOH 41 154 116 HOH HOH A . D 3 HOH 42 155 117 HOH HOH A . D 3 HOH 43 156 125 HOH HOH A . D 3 HOH 44 157 126 HOH HOH A . D 3 HOH 45 158 127 HOH HOH A . D 3 HOH 46 159 129 HOH HOH A . D 3 HOH 47 160 131 HOH HOH A . E 3 HOH 1 115 2 HOH HOH B . E 3 HOH 2 116 3 HOH HOH B . E 3 HOH 3 117 5 HOH HOH B . E 3 HOH 4 118 6 HOH HOH B . E 3 HOH 5 119 7 HOH HOH B . E 3 HOH 6 120 9 HOH HOH B . E 3 HOH 7 121 11 HOH HOH B . E 3 HOH 8 122 12 HOH HOH B . E 3 HOH 9 123 13 HOH HOH B . E 3 HOH 10 124 14 HOH HOH B . E 3 HOH 11 125 15 HOH HOH B . E 3 HOH 12 126 16 HOH HOH B . E 3 HOH 13 127 17 HOH HOH B . E 3 HOH 14 128 19 HOH HOH B . E 3 HOH 15 129 20 HOH HOH B . E 3 HOH 16 130 21 HOH HOH B . E 3 HOH 17 131 23 HOH HOH B . E 3 HOH 18 132 24 HOH HOH B . E 3 HOH 19 133 26 HOH HOH B . E 3 HOH 20 134 27 HOH HOH B . E 3 HOH 21 135 28 HOH HOH B . E 3 HOH 22 136 29 HOH HOH B . E 3 HOH 23 137 32 HOH HOH B . E 3 HOH 24 138 33 HOH HOH B . E 3 HOH 25 139 34 HOH HOH B . E 3 HOH 26 140 36 HOH HOH B . E 3 HOH 27 141 37 HOH HOH B . E 3 HOH 28 142 43 HOH HOH B . E 3 HOH 29 143 46 HOH HOH B . E 3 HOH 30 144 49 HOH HOH B . E 3 HOH 31 145 51 HOH HOH B . E 3 HOH 32 146 52 HOH HOH B . E 3 HOH 33 147 53 HOH HOH B . E 3 HOH 34 148 54 HOH HOH B . E 3 HOH 35 149 55 HOH HOH B . E 3 HOH 36 150 56 HOH HOH B . E 3 HOH 37 151 58 HOH HOH B . E 3 HOH 38 152 60 HOH HOH B . E 3 HOH 39 153 61 HOH HOH B . E 3 HOH 40 154 62 HOH HOH B . E 3 HOH 41 155 63 HOH HOH B . E 3 HOH 42 156 64 HOH HOH B . E 3 HOH 43 157 65 HOH HOH B . E 3 HOH 44 158 66 HOH HOH B . E 3 HOH 45 159 67 HOH HOH B . E 3 HOH 46 160 68 HOH HOH B . E 3 HOH 47 161 70 HOH HOH B . E 3 HOH 48 162 73 HOH HOH B . E 3 HOH 49 163 75 HOH HOH B . E 3 HOH 50 164 76 HOH HOH B . E 3 HOH 51 165 78 HOH HOH B . E 3 HOH 52 166 80 HOH HOH B . E 3 HOH 53 167 82 HOH HOH B . E 3 HOH 54 168 83 HOH HOH B . E 3 HOH 55 169 84 HOH HOH B . E 3 HOH 56 170 88 HOH HOH B . E 3 HOH 57 171 89 HOH HOH B . E 3 HOH 58 172 90 HOH HOH B . E 3 HOH 59 173 91 HOH HOH B . E 3 HOH 60 174 92 HOH HOH B . E 3 HOH 61 175 93 HOH HOH B . E 3 HOH 62 176 94 HOH HOH B . E 3 HOH 63 177 95 HOH HOH B . E 3 HOH 64 178 96 HOH HOH B . E 3 HOH 65 179 100 HOH HOH B . E 3 HOH 66 180 101 HOH HOH B . E 3 HOH 67 181 102 HOH HOH B . E 3 HOH 68 182 106 HOH HOH B . E 3 HOH 69 183 108 HOH HOH B . E 3 HOH 70 184 109 HOH HOH B . E 3 HOH 71 185 110 HOH HOH B . E 3 HOH 72 186 111 HOH HOH B . E 3 HOH 73 187 112 HOH HOH B . E 3 HOH 74 188 113 HOH HOH B . E 3 HOH 75 189 118 HOH HOH B . E 3 HOH 76 190 119 HOH HOH B . E 3 HOH 77 191 120 HOH HOH B . E 3 HOH 78 192 121 HOH HOH B . E 3 HOH 79 193 122 HOH HOH B . E 3 HOH 80 194 123 HOH HOH B . E 3 HOH 81 195 124 HOH HOH B . E 3 HOH 82 196 128 HOH HOH B . E 3 HOH 83 197 130 HOH HOH B . E 3 HOH 84 198 132 HOH HOH B . E 3 HOH 85 199 133 HOH HOH B . E 3 HOH 86 200 134 HOH HOH B . E 3 HOH 87 201 135 HOH HOH B . E 3 HOH 88 202 136 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 30 A MSE 29 ? MET SELENOMETHIONINE 3 A MSE 87 A MSE 86 ? MET SELENOMETHIONINE 4 A MSE 104 A MSE 103 ? MET SELENOMETHIONINE 5 B MSE 30 B MSE 29 ? MET SELENOMETHIONINE 6 B MSE 87 B MSE 86 ? MET SELENOMETHIONINE 7 B MSE 104 B MSE 103 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA,PQS dimeric 2 2 author_and_software_defined_assembly PISA,PQS dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,D 2 1,3 B,C,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2940 ? 1 MORE -28 ? 1 'SSA (A^2)' 10280 ? 2 'ABSA (A^2)' 3510 ? 2 MORE -27 ? 2 'SSA (A^2)' 10180 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 69.7900000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 75.2600000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 186 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-20 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2017-10-25 6 'Structure model' 1 5 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Author supporting evidence' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' pdbx_struct_assembly_auth_evidence 3 6 'Structure model' database_2 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 6 'Structure model' '_struct_ref_seq_dif.details' 7 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 5.1310 32.7126 9.3193 -0.0438 -0.0790 -0.0789 0.0337 0.0017 -0.0116 1.4926 0.5290 8.6997 0.4108 0.4241 1.5421 0.0508 -0.1575 -0.1142 0.1131 0.0545 0.0149 0.4950 0.4015 -0.1053 'X-RAY DIFFRACTION' 2 ? refined -2.1823 40.1945 28.3239 -0.1031 -0.1018 -0.0560 -0.0261 0.0002 -0.0162 0.9777 1.0624 3.7894 0.0696 -0.4385 0.1630 -0.0543 0.1749 -0.1589 -0.1983 0.0102 0.0497 0.1515 -0.1782 0.0441 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 2 A 110 A 111 ? 'X-RAY DIFFRACTION' ? 2 2 B 2 B 3 B 110 B 111 ? 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SHARP . ? ? ? ? phasing ? ? ? 7 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ; BIOMOLECULE: 1, 2 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; 999 ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 11 ? ? CZ A ARG 11 ? ? NH1 A ARG 11 ? ? 114.94 120.30 -5.36 0.50 N 2 1 CB A ASP 83 ? ? CG A ASP 83 ? ? OD1 A ASP 83 ? ? 124.08 118.30 5.78 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 46 ? ? 52.61 -135.57 2 1 SER A 49 ? ? -100.81 -77.78 3 1 VAL A 50 ? ? 32.13 63.65 4 1 PHE A 72 ? ? -161.34 118.38 5 1 ASP A 73 ? ? 73.99 -72.35 6 1 GLU A 82 ? ? 83.54 -17.56 7 1 GLU B 20 ? A -112.17 -151.66 8 1 GLU B 20 ? B -160.39 104.83 9 1 ALA B 21 ? A -174.21 132.62 10 1 ASP B 46 ? A -31.51 -76.82 11 1 ASP B 73 ? ? 48.96 -122.81 12 1 GLU B 82 ? ? 87.23 -16.28 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY B 47 ? A GLU B 48 ? ? -148.60 2 1 ILE B 109 ? B ASP B 110 ? B 41.59 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 35 ? CG ? A ASP 36 CG 2 1 Y 1 A ASP 35 ? OD1 ? A ASP 36 OD1 3 1 Y 1 A ASP 35 ? OD2 ? A ASP 36 OD2 4 1 Y 1 A ARG 36 ? CG ? A ARG 37 CG 5 1 Y 1 A ARG 36 ? CD ? A ARG 37 CD 6 1 Y 1 A ARG 36 ? NE ? A ARG 37 NE 7 1 Y 1 A ARG 36 ? CZ ? A ARG 37 CZ 8 1 Y 1 A ARG 36 ? NH1 ? A ARG 37 NH1 9 1 Y 1 A ARG 36 ? NH2 ? A ARG 37 NH2 10 1 Y 1 A GLN 38 ? OE1 ? A GLN 39 OE1 11 1 Y 1 A GLN 38 ? NE2 ? A GLN 39 NE2 12 1 Y 1 A GLU 48 ? CD ? A GLU 49 CD 13 1 Y 1 A GLU 48 ? OE1 ? A GLU 49 OE1 14 1 Y 1 A GLU 48 ? OE2 ? A GLU 49 OE2 15 1 Y 1 A SER 51 ? OG ? A SER 52 OG 16 1 Y 1 A ASP 73 ? CG ? A ASP 74 CG 17 1 Y 1 A ASP 73 ? OD1 ? A ASP 74 OD1 18 1 Y 1 A ASP 73 ? OD2 ? A ASP 74 OD2 19 1 Y 1 A ASP 74 ? CG ? A ASP 75 CG 20 1 Y 1 A ASP 74 ? OD1 ? A ASP 75 OD1 21 1 Y 1 A ASP 74 ? OD2 ? A ASP 75 OD2 22 1 Y 1 A LYS 76 ? CG ? A LYS 77 CG 23 1 Y 1 A LYS 76 ? CD ? A LYS 77 CD 24 1 Y 1 A LYS 76 ? CE ? A LYS 77 CE 25 1 Y 1 A LYS 76 ? NZ ? A LYS 77 NZ 26 1 Y 1 A ILE 92 ? CD1 ? A ILE 93 CD1 27 1 Y 1 B ARG 22 ? CZ ? B ARG 23 CZ 28 1 Y 1 B ARG 22 ? NH1 ? B ARG 23 NH1 29 1 Y 1 B ARG 22 ? NH2 ? B ARG 23 NH2 30 1 Y 1 B GLU 23 ? CD ? B GLU 24 CD 31 1 Y 1 B GLU 23 ? OE1 ? B GLU 24 OE1 32 1 Y 1 B GLU 23 ? OE2 ? B GLU 24 OE2 33 1 Y 1 B ARG 36 ? CG ? B ARG 37 CG 34 1 Y 1 B ARG 36 ? CD ? B ARG 37 CD 35 1 Y 1 B ARG 36 ? NE ? B ARG 37 NE 36 1 Y 1 B ARG 36 ? CZ ? B ARG 37 CZ 37 1 Y 1 B ARG 36 ? NH1 ? B ARG 37 NH1 38 1 Y 1 B ARG 36 ? NH2 ? B ARG 37 NH2 39 1 Y 1 B VAL 50 ? CG1 ? B VAL 51 CG1 40 1 Y 1 B VAL 50 ? CG2 ? B VAL 51 CG2 41 1 Y 1 B LYS 76 ? CE ? B LYS 77 CE 42 1 Y 1 B LYS 76 ? NZ ? B LYS 77 NZ 43 1 Y 1 B LYS 91 ? NZ ? B LYS 92 NZ 44 1 Y 1 B ASP 110 ? CG ? B ASP 111 CG 45 1 Y 1 B ASP 110 ? OD1 ? B ASP 111 OD1 46 1 Y 1 B ASP 110 ? OD2 ? B ASP 111 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLU 111 ? A GLU 112 3 1 Y 1 A GLU 112 ? A GLU 113 4 1 Y 1 A ARG 113 ? A ARG 114 5 1 Y 1 B GLY 0 ? B GLY 1 6 1 Y 1 B MSE 1 ? B MSE 2 7 1 Y 1 B GLU 111 ? B GLU 112 8 1 Y 1 B GLU 112 ? B GLU 113 9 1 Y 1 B ARG 113 ? B ARG 114 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 2 'gel filtration' ? #