HEADER UNKNOWN FUNCTION 26-FEB-07 2OZJ TITLE CRYSTAL STRUCTURE OF A CUPIN SUPERFAMILY PROTEIN (DSY2733) FROM TITLE 2 DESULFITOBACTERIUM HAFNIENSE DCB-2 AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUPIN 2, CONSERVED BARREL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB-2; SOURCE 5 GENE: EAT53321.1, DHAF_2995; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS CUPIN SUPERFAMILY PROTEIN, CUPIN 2, CONSERVED BARREL, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2OZJ 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 2OZJ 1 REMARK REVDAT 5 18-OCT-17 2OZJ 1 REMARK REVDAT 4 13-JUL-11 2OZJ 1 VERSN REVDAT 3 28-JUL-10 2OZJ 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2OZJ 1 VERSN REVDAT 1 20-MAR-07 2OZJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF CUPIN 2, CONSERVED BARREL (EAT53321.1) JRNL TITL 2 FROM DESULFITOBACTERIUM HAFNIENSE DCB-2 AT 1.60 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1475 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1840 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1226 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2509 ; 1.748 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3032 ; 0.966 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 8.183 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;32.489 ;25.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;14.455 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;21.374 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2074 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 343 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 277 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1277 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 852 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1088 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 105 ; 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.002 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.283 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.292 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1246 ; 2.300 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 470 ; 0.739 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1916 ; 3.137 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 680 ; 5.047 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 591 ; 7.412 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 110 4 REMARK 3 2 B 2 B 110 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1237 ; 0.78 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1237 ; 1.41 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1310 32.7126 9.3193 REMARK 3 T TENSOR REMARK 3 T11: -0.0438 T22: -0.0790 REMARK 3 T33: -0.0789 T12: 0.0337 REMARK 3 T13: 0.0017 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 1.4926 L22: 0.5290 REMARK 3 L33: 8.6997 L12: 0.4108 REMARK 3 L13: 0.4241 L23: 1.5421 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: -0.1575 S13: -0.1142 REMARK 3 S21: 0.1131 S22: 0.0545 S23: 0.0149 REMARK 3 S31: 0.4950 S32: 0.4015 S33: -0.1053 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1823 40.1945 28.3239 REMARK 3 T TENSOR REMARK 3 T11: -0.1031 T22: -0.1018 REMARK 3 T33: -0.0560 T12: -0.0261 REMARK 3 T13: 0.0002 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.9777 L22: 1.0624 REMARK 3 L33: 3.7894 L12: 0.0696 REMARK 3 L13: -0.4385 L23: 0.1630 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: 0.1749 S13: -0.1589 REMARK 3 S21: -0.1983 S22: 0.0102 S23: 0.0497 REMARK 3 S31: 0.1515 S32: -0.1782 S33: 0.0441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. THE GEOMETRY OF THE SEVERAL REGIONS ARE POOR DUE TO REMARK 3 DISORDER. THESE REGIONS ARE RESIDUES 3-5, 19-30, 47-51 AND REMARK 3 108-110 IN A AND B SUBUNITS. REMARK 4 REMARK 4 2OZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97941, 0.97917 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28987 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.25M SODIUM CHLORIDE, 33.0% REMARK 280 2-METHYL-2,4-PENTANEDIOL, 0.1M TRIS-HCL PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.26000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.26000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.46500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.89500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.46500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.89500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.26000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.46500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 34.89500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.26000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.46500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 34.89500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 69.79000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.26000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 186 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 111 REMARK 465 GLU A 112 REMARK 465 ARG A 113 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLU B 111 REMARK 465 GLU B 112 REMARK 465 ARG B 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 38 OE1 NE2 REMARK 470 GLU A 48 CD OE1 OE2 REMARK 470 SER A 51 OG REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 ASP A 74 CG OD1 OD2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ILE A 92 CD1 REMARK 470 ARG B 22 CZ NH1 NH2 REMARK 470 GLU B 23 CD OE1 OE2 REMARK 470 ARG B 36 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 50 CG1 CG2 REMARK 470 LYS B 76 CE NZ REMARK 470 LYS B 91 NZ REMARK 470 ASP B 110 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 83 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 46 -135.57 52.61 REMARK 500 SER A 49 -77.78 -100.81 REMARK 500 VAL A 50 63.65 32.13 REMARK 500 PHE A 72 118.38 -161.34 REMARK 500 ASP A 73 -72.35 73.99 REMARK 500 GLU A 82 -17.56 83.54 REMARK 500 GLU B 20 -151.66 -112.17 REMARK 500 GLU B 20 104.83 -160.39 REMARK 500 ALA B 21 132.62 -174.21 REMARK 500 ASP B 46 -76.82 -31.51 REMARK 500 ASP B 73 -122.81 48.96 REMARK 500 GLU B 82 -16.28 87.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 47 GLU B 48 -148.60 REMARK 500 ILE B 109 ASP B 110 41.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 114 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 366882 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2OZJ A 1 113 UNP Q18ZY6 Q18ZY6_DESHD 1 113 DBREF 2OZJ B 1 113 UNP Q18ZY6 Q18ZY6_DESHD 1 113 SEQADV 2OZJ GLY A 0 UNP Q18ZY6 EXPRESSION TAG SEQADV 2OZJ MSE A 1 UNP Q18ZY6 MET 1 MODIFIED RESIDUE SEQADV 2OZJ MSE A 29 UNP Q18ZY6 MET 29 MODIFIED RESIDUE SEQADV 2OZJ MSE A 86 UNP Q18ZY6 MET 86 MODIFIED RESIDUE SEQADV 2OZJ MSE A 103 UNP Q18ZY6 MET 103 MODIFIED RESIDUE SEQADV 2OZJ GLY B 0 UNP Q18ZY6 EXPRESSION TAG SEQADV 2OZJ MSE B 1 UNP Q18ZY6 MET 1 MODIFIED RESIDUE SEQADV 2OZJ MSE B 29 UNP Q18ZY6 MET 29 MODIFIED RESIDUE SEQADV 2OZJ MSE B 86 UNP Q18ZY6 MET 86 MODIFIED RESIDUE SEQADV 2OZJ MSE B 103 UNP Q18ZY6 MET 103 MODIFIED RESIDUE SEQRES 1 A 114 GLY MSE ALA ARG LEU LYS ASN LEU PRO GLN GLU ARG PRO SEQRES 2 A 114 LEU PRO LEU ALA SER LEU ILE GLU ALA ARG GLU ASN GLN SEQRES 3 A 114 VAL LEU SER MSE ALA LEU ALA GLN SER ASP ARG VAL GLN SEQRES 4 A 114 ILE SER LEU PHE SER PHE ALA ASP GLY GLU SER VAL SER SEQRES 5 A 114 GLU GLU GLU TYR PHE GLY ASP THR LEU TYR LEU ILE LEU SEQRES 6 A 114 GLN GLY GLU ALA VAL ILE THR PHE ASP ASP GLN LYS ILE SEQRES 7 A 114 ASP LEU VAL PRO GLU ASP VAL LEU MSE VAL PRO ALA HIS SEQRES 8 A 114 LYS ILE HIS ALA ILE ALA GLY LYS GLY ARG PHE LYS MSE SEQRES 9 A 114 LEU GLN ILE THR LEU ILE ASP GLU GLU ARG SEQRES 1 B 114 GLY MSE ALA ARG LEU LYS ASN LEU PRO GLN GLU ARG PRO SEQRES 2 B 114 LEU PRO LEU ALA SER LEU ILE GLU ALA ARG GLU ASN GLN SEQRES 3 B 114 VAL LEU SER MSE ALA LEU ALA GLN SER ASP ARG VAL GLN SEQRES 4 B 114 ILE SER LEU PHE SER PHE ALA ASP GLY GLU SER VAL SER SEQRES 5 B 114 GLU GLU GLU TYR PHE GLY ASP THR LEU TYR LEU ILE LEU SEQRES 6 B 114 GLN GLY GLU ALA VAL ILE THR PHE ASP ASP GLN LYS ILE SEQRES 7 B 114 ASP LEU VAL PRO GLU ASP VAL LEU MSE VAL PRO ALA HIS SEQRES 8 B 114 LYS ILE HIS ALA ILE ALA GLY LYS GLY ARG PHE LYS MSE SEQRES 9 B 114 LEU GLN ILE THR LEU ILE ASP GLU GLU ARG MODRES 2OZJ MSE A 1 MET SELENOMETHIONINE MODRES 2OZJ MSE A 29 MET SELENOMETHIONINE MODRES 2OZJ MSE A 86 MET SELENOMETHIONINE MODRES 2OZJ MSE A 103 MET SELENOMETHIONINE MODRES 2OZJ MSE B 29 MET SELENOMETHIONINE MODRES 2OZJ MSE B 86 MET SELENOMETHIONINE MODRES 2OZJ MSE B 103 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 29 8 HET MSE A 86 8 HET MSE A 103 16 HET MSE B 29 16 HET MSE B 86 8 HET MSE B 103 8 HET GOL B 114 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *135(H2 O) HELIX 1 1 PRO A 14 ILE A 19 5 6 HELIX 2 2 PRO B 14 ILE B 19 5 6 SHEET 1 A 2 ARG A 3 LEU A 4 0 SHEET 2 A 2 ALA A 32 GLN A 33 -1 O GLN A 33 N ARG A 3 SHEET 1 B 9 SER B 49 GLU B 53 0 SHEET 2 B 9 HIS B 93 LEU B 108 -1 O HIS B 93 N GLU B 53 SHEET 3 B 9 THR B 59 PHE B 72 -1 N LEU B 60 O ILE B 106 SHEET 4 B 9 VAL B 84 VAL B 87 -1 O VAL B 87 N THR B 59 SHEET 5 B 9 VAL A 26 ALA A 30 0 SHEET 6 B 9 VAL A 37 ALA A 45 -1 O LEU A 41 N MSE A 29 SHEET 7 B 9 ALA A 94 LEU A 108 -1 O MSE A 103 N PHE A 42 SHEET 8 B 9 THR A 59 PHE A 72 -1 N THR A 71 O ALA A 94 SHEET 9 B 9 GLN A 75 LEU A 79 -1 O ILE A 77 N ILE A 70 SHEET 1 C 7 SER B 49 GLU B 53 0 SHEET 2 C 7 HIS B 93 LEU B 108 -1 O HIS B 93 N GLU B 53 SHEET 3 C 7 THR B 59 PHE B 72 -1 N LEU B 60 O ILE B 106 SHEET 4 C 7 GLN B 75 LEU B 79 -1 O ILE B 77 N ILE B 70 SHEET 5 C 7 VAL A 26 ALA A 30 0 SHEET 6 C 7 VAL A 37 ALA A 45 -1 O LEU A 41 N MSE A 29 SHEET 7 C 7 VAL B 26 ALA B 30 0 SHEET 1 D 9 SER B 49 GLU B 53 0 SHEET 2 D 9 HIS B 93 LEU B 108 -1 O HIS B 93 N GLU B 53 SHEET 3 D 9 VAL B 37 PHE B 44 -1 N PHE B 44 O PHE B 101 SHEET 4 D 9 VAL B 26 ALA B 30 -1 N MSE B 29 O LEU B 41 SHEET 5 D 9 VAL A 26 ALA A 30 -1 N VAL A 26 O SER B 28 SHEET 6 D 9 VAL A 37 ALA A 45 -1 O LEU A 41 N MSE A 29 SHEET 7 D 9 ALA A 94 LEU A 108 -1 O MSE A 103 N PHE A 42 SHEET 8 D 9 THR A 59 PHE A 72 -1 N THR A 71 O ALA A 94 SHEET 9 D 9 VAL A 84 VAL A 87 -1 O LEU A 85 N TYR A 61 SHEET 1 E 2 ARG B 3 LEU B 4 0 SHEET 2 E 2 ALA B 32 GLN B 33 -1 O GLN B 33 N ARG B 3 LINK C MSE A 1 N ALA A 2 1555 1555 1.32 LINK C SER A 28 N MSE A 29 1555 1555 1.34 LINK C MSE A 29 N ALA A 30 1555 1555 1.34 LINK C LEU A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N VAL A 87 1555 1555 1.33 LINK C LYS A 102 N BMSE A 103 1555 1555 1.33 LINK C LYS A 102 N AMSE A 103 1555 1555 1.33 LINK C BMSE A 103 N LEU A 104 1555 1555 1.33 LINK C AMSE A 103 N LEU A 104 1555 1555 1.33 LINK C SER B 28 N BMSE B 29 1555 1555 1.32 LINK C SER B 28 N AMSE B 29 1555 1555 1.33 LINK C BMSE B 29 N ALA B 30 1555 1555 1.33 LINK C AMSE B 29 N ALA B 30 1555 1555 1.33 LINK C LEU B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N VAL B 87 1555 1555 1.33 LINK C LYS B 102 N MSE B 103 1555 1555 1.33 LINK C MSE B 103 N LEU B 104 1555 1555 1.31 CISPEP 1 ILE B 109 ASP B 110 0 10.94 SITE 1 AC1 4 ARG B 11 GLN B 75 HOH B 146 HOH B 154 CRYST1 40.930 69.790 150.520 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006644 0.00000 HETATM 1 N MSE A 1 -13.967 44.943 3.465 1.00 39.89 N HETATM 2 CA MSE A 1 -13.111 44.796 2.244 1.00 40.54 C HETATM 3 C MSE A 1 -11.797 44.073 2.523 1.00 32.75 C HETATM 4 O MSE A 1 -11.159 44.315 3.519 1.00 34.06 O HETATM 5 CB MSE A 1 -12.763 46.169 1.641 1.00 41.72 C HETATM 6 CG MSE A 1 -11.486 46.155 0.733 1.00 43.18 C HETATM 7 SE MSE A 1 -10.861 47.883 0.028 0.75 50.34 SE HETATM 8 CE MSE A 1 -9.605 48.350 1.399 1.00 14.24 C