HEADER LYASE 27-FEB-07 2OZT TITLE CRYSTAL STRUCTURE OF O-SUCCINYLBENZOATE SYNTHASE FROM TITLE 2 THERMOSYNECHOCOCCUS ELONGATUS BP-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TLR1174 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 32046; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: TLR1174; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, O-SUCCINYLBENZOATE SYNTHASE, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK STRUCTURAL GENOMICS RESEARCH KEYWDS 3 CONSORTIUM, NYSGRC, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, NYSGXRC, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,J.BONANNO,R.TORO,J.M.SAUDER,K.D.SCHWINN,K.T.BAIN, AUTHOR 2 J.M.ADAMS,C.REYES,I.ROONEY,T.GHEYI,S.R.WASSERMAN,S.EMTAGE, AUTHOR 3 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 4 GENOMICS (NYSGXRC) REVDAT 9 30-OCT-24 2OZT 1 REMARK REVDAT 8 03-FEB-21 2OZT 1 AUTHOR JRNL REMARK SEQADV REVDAT 8 2 1 LINK REVDAT 7 24-JUL-19 2OZT 1 REMARK LINK REVDAT 6 14-NOV-18 2OZT 1 AUTHOR REVDAT 5 18-OCT-17 2OZT 1 REMARK REVDAT 4 13-AUG-14 2OZT 1 JRNL REVDAT 3 11-JUN-14 2OZT 1 JRNL VERSN REVDAT 2 24-FEB-09 2OZT 1 VERSN REVDAT 1 13-MAR-07 2OZT 0 JRNL AUTH D.ODOKONYERO,A.SAKAI,Y.PATSKOVSKY,V.N.MALASHKEVICH, JRNL AUTH 2 A.A.FEDOROV,J.B.BONANNO,E.V.FEDOROV,R.TORO,R.AGARWAL,C.WANG, JRNL AUTH 3 N.D.OZEROVA,W.S.YEW,J.M.SAUDER,S.SWAMINATHAN,S.K.BURLEY, JRNL AUTH 4 S.C.ALMO,M.E.GLASNER JRNL TITL LOSS OF QUATERNARY STRUCTURE IS ASSOCIATED WITH RAPID JRNL TITL 2 SEQUENCE DIVERGENCE IN THE OSBS FAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 8535 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24872444 JRNL DOI 10.1073/PNAS.1318703111 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0028 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 58225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3115 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3591 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2672 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3662 ; 1.495 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 5.626 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;35.512 ;23.089 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;12.310 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.021 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2083 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1207 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1819 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 290 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1617 ; 1.015 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2597 ; 1.758 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1154 ; 2.509 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1064 ; 3.962 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2OZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041789. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 116450 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.1M PHOSPHATE-CITRATE, REMARK 280 PH 4.2, 0.2M NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.07750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.07750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.82050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.74900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.82050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.74900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.07750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.82050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.74900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.07750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.82050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.74900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 ASP A 321 REMARK 465 GLN A 322 REMARK 465 GLU A 323 REMARK 465 GLY A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 761 O HOH A 1007 1.65 REMARK 500 O GLU A 9 O HOH A 1074 1.98 REMARK 500 OE2 GLU A 9 O HOH A 994 2.16 REMARK 500 O HOH A 1005 O HOH A 1066 2.18 REMARK 500 O HOH A 953 O HOH A 1008 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 82 66.67 -119.49 REMARK 500 GLN A 201 51.82 -90.27 REMARK 500 ASP A 219 -78.46 -136.33 REMARK 500 ARG A 259 -134.17 -87.90 REMARK 500 GLN A 289 73.05 52.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 186 ASN A 187 -148.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 165 OD1 REMARK 620 2 ASP A 219 OD2 134.0 REMARK 620 3 GLU A 220 OE1 141.6 83.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9306E RELATED DB: TARGETDB DBREF 2OZT A 2 322 UNP Q8DJP8 Q8DJP8_SYNEL 2 322 SEQADV 2OZT MSE A -1 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT SER A 0 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT LEU A 1 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT MSE A 75 UNP Q8DJP8 MET 75 MODIFIED RESIDUE SEQADV 2OZT MSE A 140 UNP Q8DJP8 MET 140 MODIFIED RESIDUE SEQADV 2OZT GLU A 323 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT GLY A 324 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT HIS A 325 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT HIS A 326 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT HIS A 327 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT HIS A 328 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT HIS A 329 UNP Q8DJP8 CLONING ARTIFACT SEQADV 2OZT HIS A 330 UNP Q8DJP8 CLONING ARTIFACT SEQRES 1 A 332 MSE SER LEU ARG TRP GLN TRP ARG ILE TYR GLU GLU PRO SEQRES 2 A 332 LEU GLN GLU PRO LEU THR THR ALA GLN GLY VAL TRP ARG SEQRES 3 A 332 SER ARG SER GLY ILE TYR LEU ARG LEU GLU ASP GLU GLN SEQRES 4 A 332 GLY GLN VAL GLY TYR GLY GLU ILE ALA PRO LEU PRO GLY SEQRES 5 A 332 TRP GLY SER GLU THR LEU ASN ALA ASP ILE ALA LEU CYS SEQRES 6 A 332 GLN GLN LEU PRO GLY HIS LEU THR PRO GLU ILE MSE ALA SEQRES 7 A 332 THR ILE PRO GLU ALA LEU PRO ALA ALA GLN PHE GLY PHE SEQRES 8 A 332 ALA THR ALA TRP GLN SER VAL GLY ARG LEU PRO TYR ARG SEQRES 9 A 332 VAL ARG PRO TRP PRO ILE CYS ALA LEU LEU GLY SER GLY SEQRES 10 A 332 GLN ALA ALA LEU GLU GLN TRP GLN GLN SER TRP GLN ARG SEQRES 11 A 332 GLY GLN THR THR PHE LYS TRP LYS VAL GLY VAL MSE SER SEQRES 12 A 332 PRO GLU GLU GLU GLN ALA ILE LEU LYS ALA LEU LEU ALA SEQRES 13 A 332 ALA LEU PRO PRO GLY ALA LYS LEU ARG LEU ASP ALA ASN SEQRES 14 A 332 GLY SER TRP ASP ARG ALA THR ALA ASN ARG TRP PHE ALA SEQRES 15 A 332 TRP LEU ASP ARG HIS GLY ASN GLY LYS ILE GLU TYR VAL SEQRES 16 A 332 GLU GLN PRO LEU PRO PRO ASP GLN TRP GLN ALA LEU LEU SEQRES 17 A 332 SER LEU ALA GLN THR VAL THR THR ALA ILE ALA LEU ASP SEQRES 18 A 332 GLU SER VAL VAL SER ALA ALA GLU VAL GLN ARG TRP VAL SEQRES 19 A 332 ASP ARG GLY TRP PRO GLY PHE PHE VAL ILE LYS THR ALA SEQRES 20 A 332 LEU PHE GLY ASP PRO ASP SER LEU SER LEU LEU LEU ARG SEQRES 21 A 332 ARG GLY LEU GLU PRO GLN ARG LEU VAL PHE SER SER ALA SEQRES 22 A 332 LEU GLU GLY ALA ILE ALA ARG THR ALA ILE PHE HIS LEU SEQRES 23 A 332 LEU GLU THR TRP GLN PRO CYS HIS ALA LEU GLY PHE GLY SEQRES 24 A 332 VAL ASP ARG TRP ARG SER ALA PRO LEU LEU THR THR LEU SEQRES 25 A 332 THR ALA TYR GLU ARG LEU TRP GLU ARG LEU ASP GLN GLU SEQRES 26 A 332 GLY HIS HIS HIS HIS HIS HIS MODRES 2OZT MSE A 75 MET SELENOMETHIONINE MODRES 2OZT MSE A 140 MET SELENOMETHIONINE HET MSE A 75 8 HET MSE A 140 8 HET PO4 A 601 5 HET PO4 A 602 5 HET NA A 701 1 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 NA NA 1+ FORMUL 5 HOH *382(H2 O) HELIX 1 1 THR A 55 LEU A 66 1 12 HELIX 2 2 THR A 71 ALA A 76 1 6 HELIX 3 3 LEU A 82 VAL A 96 1 15 HELIX 4 4 SER A 114 GLN A 116 5 3 HELIX 5 5 ALA A 117 ARG A 128 1 12 HELIX 6 6 SER A 141 LEU A 156 1 16 HELIX 7 7 ASP A 171 GLY A 186 1 16 HELIX 8 8 GLN A 201 VAL A 212 1 12 HELIX 9 9 SER A 224 ARG A 234 1 11 HELIX 10 10 LYS A 243 GLY A 248 1 6 HELIX 11 11 ASP A 249 ARG A 259 1 11 HELIX 12 12 GLU A 262 GLN A 264 5 3 HELIX 13 13 GLY A 274 GLN A 289 1 16 HELIX 14 14 THR A 309 ARG A 319 1 11 SHEET 1 A 4 VAL A 40 ILE A 45 0 SHEET 2 A 4 GLY A 21 GLU A 34 -1 N LEU A 31 O GLY A 43 SHEET 3 A 4 LEU A 1 THR A 18 -1 N LEU A 16 O TRP A 23 SHEET 4 A 4 HIS A 69 LEU A 70 -1 O LEU A 70 N LEU A 1 SHEET 1 B 7 ALA A 110 LEU A 112 0 SHEET 2 B 7 THR A 132 LYS A 136 1 O THR A 132 N ALA A 110 SHEET 3 B 7 LYS A 161 ASP A 165 1 O ASP A 165 N TRP A 135 SHEET 4 B 7 ILE A 190 GLU A 194 1 O GLU A 194 N LEU A 164 SHEET 5 B 7 ILE A 216 LEU A 218 1 O ALA A 217 N VAL A 193 SHEET 6 B 7 PHE A 239 ILE A 242 1 O VAL A 241 N LEU A 218 SHEET 7 B 7 LEU A 266 PHE A 268 1 O VAL A 267 N ILE A 242 LINK C ILE A 74 N MSE A 75 1555 1555 1.32 LINK C MSE A 75 N ALA A 76 1555 1555 1.34 LINK C VAL A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N SER A 141 1555 1555 1.33 LINK OD1 ASP A 165 NA NA A 701 1555 1555 2.53 LINK OD2 ASP A 219 NA NA A 701 1555 1555 2.74 LINK OE1 GLU A 220 NA NA A 701 1555 1555 2.68 CISPEP 1 LEU A 99 PRO A 100 0 -0.61 SITE 1 AC1 9 THR A 132 LYS A 161 ARG A 163 GLU A 191 SITE 2 AC1 9 CYS A 291 HIS A 292 ALA A 293 HOH A 800 SITE 3 AC1 9 HOH A1061 SITE 1 AC2 5 ASP A 171 ARG A 172 GLN A 201 HOH A 719 SITE 2 AC2 5 HOH A1031 SITE 1 AC3 6 ASP A 165 ASN A 167 GLU A 194 GLN A 195 SITE 2 AC3 6 ASP A 219 GLU A 220 CRYST1 39.641 113.498 148.155 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006750 0.00000