HEADER HYDROLASE (SERINE PROTEINASE) 26-OCT-90 2P07 OBSLTE 29-JAN-96 2P07 1GBJ TITLE STRUCTURAL PLASTICITY AS A DETERMINANT OF ENZYME TITLE 2 SPECIFICITY: CREATING BROADLY SPECIFIC PROTEASES COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS HYDROLASE (SERINE PROTEINASE) EXPDTA X-RAY DIFFRACTION AUTHOR R.BONE,D.A.AGARD REVDAT 1 15-JAN-93 2P07 0 SPRSDE 15-JAN-93 2P07 1P07 JRNL AUTH R.BONE,J.L.SILEN,D.A.AGARD JRNL TITL STRUCTURAL PLASTICITY AS A DETERMINANT OF ENZYME JRNL TITL 2 SPECIFICITY: CREATING BROADLY SPECIFIC PROTEASES JRNL REF NATURE V. 27 7682 1988 JRNL REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.A.KETTNER,R.BONE,D.A.AGARD,W.W.BACHOVCHIN REMARK 1 TITL KINETIC PROPERTIES OF THE BINDING OF ALPHA-LYTIC REMARK 1 TITL 2 PROTEASE TO PEPTIDE BORONIC ACIDS REMARK 1 REF BIOCHEMISTRY V. 27 7682 1988 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.BONE,A.B.SHENVI,C.A.KETTNER,D.A.AGARD REMARK 1 TITL SERINE PROTEASE MECHANISM. STRUCTURE OF AN REMARK 1 TITL 2 INHIBITORY COMPLEX OF ALPHA-LYTIC PROTEASE AND A REMARK 1 TITL 3 TIGHTLY BOUND PEPTIDE BORONIC ACID REMARK 1 REF BIOCHEMISTRY V. 26 7609 1987 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.FUJINAGA,L.T.J.DELBAERE,G.D.BRAYER,M.N.G.JAMES REMARK 1 TITL REFINED STRUCTURE OF ALPHA-LYTIC PROTEASE AT 1.7 REMARK 1 TITL 2 ANGSTROMS RESOLUTION. ANALYSIS OF HYDROGEN BONDING REMARK 1 TITL 3 AND SOLVENT STRUCTURE REMARK 1 REF J.MOL.BIOL. V. 184 479 1985 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH G.D.BRAYER,L.T.J.DELBAERE,M.N.G.JAMES REMARK 1 TITL MOLECULAR STRUCTURE OF THE ALPHA-LYTIC PROTEASE REMARK 1 TITL 2 FROM MYXOBACTER 495 AT 2.8 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 131 743 1979 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1399 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P07 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,2/3+Z REMARK 290 3555 -X+Y,-X,1/3+Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,1/3-Z REMARK 290 6555 -X,-X+Y,2/3-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.34000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.67000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.67000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O HOH 91 O HOH 160 2.14 SEQRES 1 198 ALA ASN ILE VAL GLY GLY ILE GLU TYR SER ILE ASN ASN SEQRES 2 198 ALA SER LEU CYS SER VAL GLY PHE SER VAL THR ARG GLY SEQRES 3 198 ALA THR LYS GLY PHE VAL THR ALA GLY HIS CYS GLY THR SEQRES 4 198 VAL ASN ALA THR ALA ARG ILE GLY GLY ALA VAL VAL GLY SEQRES 5 198 THR PHE ALA ALA ARG VAL PHE PRO GLY ASN ASP ARG ALA SEQRES 6 198 TRP VAL SER LEU THR SER ALA GLN THR LEU LEU PRO ARG SEQRES 7 198 VAL ALA ASN GLY SER SER PHE VAL THR VAL ARG GLY SER SEQRES 8 198 THR GLU ALA ALA VAL GLY ALA ALA VAL CYS ARG SER GLY SEQRES 9 198 ARG THR THR GLY TYR GLN CYS GLY THR ILE THR ALA LYS SEQRES 10 198 ASN VAL THR ALA ASN TYR ALA GLU GLY ALA VAL ARG GLY SEQRES 11 198 LEU THR GLN GLY ASN ALA CYS ALA GLY ARG GLY ASP SER SEQRES 12 198 GLY GLY SER TRP ILE THR SER ALA GLY GLN ALA GLN GLY SEQRES 13 198 VAL MET SER GLY GLY ASN VAL GLN SER ASN GLY ASN ASN SEQRES 14 198 CYS GLY ILE PRO ALA SER GLN ARG SER SER LEU PHE GLU SEQRES 15 198 ARG LEU GLN PRO ILE LEU SER GLN TYR GLY LEU SER LEU SEQRES 16 198 VAL THR GLY FTNOTE 1 RESIDUE 99A IS A CIS PROLINE. HET SO4 1 5 HET SO4 2 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *166(H2 O1) HELIX 1 1 ALA 55 GLY 59 5 5 HELIX 2 2 PRO 221B ARG 224 5 5 HELIX 3 3 LEU 231 GLY 238 1 9 SHEET 1 A 3 ASN 15B GLY 18 0 SHEET 2 A 3 THR 113 ASN 120 1 O THR 113 N ILE 16 SHEET 3 A 3 SER 120D THR 123 -1 O SER 120D N ASN 120 SHEET 1 B 8 SER 40 SER 43 0 SHEET 2 B 8 GLU 30 ILE 33 -1 N ILE 33 O SER 40 SHEET 3 B 8 THR 65A ILE 80 -1 O ARG 67 N SER 32 SHEET 4 B 8 ALA 83 VAL 93 -1 O GLY 86 N ALA 66 SHEET 5 B 8 ARG 103 LEU 108 -1 O ARG 103 N VAL 93 SHEET 6 B 8 THR 49 THR 54 -1 N LYS 50 O LEU 108 SHEET 7 B 8 PHE 46 ARG 48B-1 N ARG 48B O THR 49 SHEET 8 B 8 SER 240 LEU 241 -1 O SER 240 N THR 48A SHEET 1 C 7 ALA 135 GLY 140 0 SHEET 2 C 7 GLY 156 TYR 171 -1 O GLY 160 N VAL 136 SHEET 3 C 7 GLY 175 GLY 183 -1 O LEU 180 N VAL 167 SHEET 4 C 7 SER 226 ARG 230 -1 O SER 226 N GLY 183 SHEET 5 C 7 ALA 209 GLY 216 -1 N GLY 215 O LEU 227 SHEET 6 C 7 SER 198 ILE 200 -1 N TRP 199 O GLN 210 SHEET 7 C 7 ALA 135 GLY 140 -1 N CYS 137 O ILE 200 SSBOND 1 CYS 42 CYS 58 SSBOND 2 CYS 137 CYS 159 SSBOND 3 CYS 191 CYS 220 CISPEP 1 PHE 94 PRO 99A 0 -3.47 CRYST1 66.280 66.280 80.010 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015088 0.008711 0.000000 0.00000 SCALE2 0.000000 0.017422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012498 0.00000