HEADER TRANSPORT PROTEIN 01-MAR-07 2P0S TITLE STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A PUTATIVE ABC TITLE 2 TRANSPORTER DOMAIN FROM PORPHYROMONAS GINGIVALIS W83 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, PERMEASE PROTEIN, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ONE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83; SOURCE 5 ATCC: BAA-308; SOURCE 6 GENE: PG_0945; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS APC90123.1, PUTATIVE ABC TRANSPORTER, PORPHYROMONAS GINGIVALIS W83, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,E.DUGGAN,J.ABDULLAH,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2P0S 1 VERSN REVDAT 2 24-FEB-09 2P0S 1 VERSN REVDAT 1 03-APR-07 2P0S 0 JRNL AUTH K.TAN,E.DUGGAN,J.ABDULLAH,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A PUTATIVE ABC TRANSPORTER DOMAIN JRNL TITL 2 FROM PORPHYROMONAS GINGIVALIS W83 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 29999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1591 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2013 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.394 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2084 ; 0.034 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2807 ; 2.566 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 6.371 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;36.500 ;25.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 387 ;16.941 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.416 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.183 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1569 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 884 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1424 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.002 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 108 ; 0.307 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1333 ; 3.443 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2048 ; 4.463 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 875 ; 5.959 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 759 ; 7.812 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2208 ; 4.460 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 188 ;16.072 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2051 ;11.771 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB041823. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31663 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MGCL2, 0.1M NACL, 30% PEG400, PH REMARK 280 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.44000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.01750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.98250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.01750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.44000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.98250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT IS EXPERIMENTALLY UNKNOWN AND THE REMARK 300 ASSEMBLY OF THE BIOLOGICAL UNIT SHOWN IN REMARK 350 IS REMARK 300 PREDICTED BY THE ANALYSIS OF PROTEIN INTERFACES BASED ON REMARK 300 THIS CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 41 REMARK 465 ASN A 42 REMARK 465 ALA A 43 REMARK 465 GLN A 44 REMARK 465 LEU A 45 REMARK 465 GLY A 46 REMARK 465 GLY A 47 REMARK 465 ASP A 168 REMARK 465 GLY A 169 REMARK 465 THR A 170 REMARK 465 ASN A 171 REMARK 465 GLU A 172 REMARK 465 ARG A 173 REMARK 465 SER B 41 REMARK 465 ASN B 42 REMARK 465 ALA B 43 REMARK 465 GLN B 44 REMARK 465 LEU B 45 REMARK 465 GLY B 46 REMARK 465 GLY B 47 REMARK 465 THR B 170 REMARK 465 ASN B 171 REMARK 465 GLU B 172 REMARK 465 ARG B 173 REMARK 465 THR B 174 REMARK 465 SER B 175 REMARK 465 GLY B 176 REMARK 465 GLU B 177 REMARK 465 LEU B 178 REMARK 465 ALA B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 ILE B 182 REMARK 465 SER B 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 117 OE1 GLU B 77 3745 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 61 CE2 TYR A 61 CD2 0.115 REMARK 500 GLU A 62 CG GLU A 62 CD 0.122 REMARK 500 TYR A 113 CE2 TYR A 113 CD2 0.104 REMARK 500 VAL A 160 CB VAL A 160 CG1 -0.183 REMARK 500 ARG B 57 CZ ARG B 57 NH1 0.107 REMARK 500 TYR B 163 CG TYR B 163 CD1 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 84 CG - CD - NE ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG B 84 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 102 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 109 45.45 -92.57 REMARK 500 GLU B 67 45.76 -72.54 REMARK 500 ASN B 68 -164.18 -47.53 REMARK 500 ASP B 102 116.86 -38.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN B 68 18.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 621 O REMARK 620 2 ASP A 102 OD2 91.7 REMARK 620 3 HOH A 686 O 95.4 98.6 REMARK 620 4 HOH A 688 O 170.1 96.7 88.6 REMARK 620 5 HOH A 687 O 85.2 88.9 172.4 89.7 REMARK 620 6 HOH A 673 O 92.2 173.2 86.6 78.9 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC90123.1 RELATED DB: TARGETDB DBREF 2P0S A 44 183 UNP Q7MVU4 Q7MVU4_PORGI 44 183 DBREF 2P0S B 44 183 UNP Q7MVU4 Q7MVU4_PORGI 44 183 SEQADV 2P0S SER A 41 UNP Q7MVU4 CLONING ARTIFACT SEQADV 2P0S ASN A 42 UNP Q7MVU4 CLONING ARTIFACT SEQADV 2P0S ALA A 43 UNP Q7MVU4 CLONING ARTIFACT SEQADV 2P0S MSE A 49 UNP Q7MVU4 MET 49 MODIFIED RESIDUE SEQADV 2P0S MSE A 86 UNP Q7MVU4 MET 86 MODIFIED RESIDUE SEQADV 2P0S SER B 41 UNP Q7MVU4 CLONING ARTIFACT SEQADV 2P0S ASN B 42 UNP Q7MVU4 CLONING ARTIFACT SEQADV 2P0S ALA B 43 UNP Q7MVU4 CLONING ARTIFACT SEQADV 2P0S MSE B 49 UNP Q7MVU4 MET 49 MODIFIED RESIDUE SEQADV 2P0S MSE B 86 UNP Q7MVU4 MET 86 MODIFIED RESIDUE SEQRES 1 A 143 SER ASN ALA GLN LEU GLY GLY ASP MSE LYS THR ILE ALA SEQRES 2 A 143 ILE ALA ASP ARG THR GLY GLU TYR GLU GLN LEU PHE LYS SEQRES 3 A 143 GLU ASN ASP GLU PHE ARG PHE VAL HIS ALA GLU LYS THR SEQRES 4 A 143 ALA GLU GLU TYR ARG LYS MSE GLY ALA ASP LYS SER GLY SEQRES 5 A 143 ILE ASP ALA VAL LEU GLU ILE ARG GLN ASP LEU LEU GLU SEQRES 6 A 143 ASP PRO ASN ALA VAL ALA ILE TYR GLY TYR LYS GLN LEU SEQRES 7 A 143 PRO ALA SER VAL SER ASN HIS ILE SER ARG ILE LEU SER SEQRES 8 A 143 ASP TYR LEU SER ASP LYS LYS ILE ALA SER TYR ASN ILE SEQRES 9 A 143 PRO ASP ILE LYS GLN ILE LEU ALA ASP SER LYS ILE GLU SEQRES 10 A 143 LEU SER VAL HIS THR TYR LYS TRP SER GLU ASP GLY THR SEQRES 11 A 143 ASN GLU ARG THR SER GLY GLU LEU ALA SER GLY ILE SER SEQRES 1 B 143 SER ASN ALA GLN LEU GLY GLY ASP MSE LYS THR ILE ALA SEQRES 2 B 143 ILE ALA ASP ARG THR GLY GLU TYR GLU GLN LEU PHE LYS SEQRES 3 B 143 GLU ASN ASP GLU PHE ARG PHE VAL HIS ALA GLU LYS THR SEQRES 4 B 143 ALA GLU GLU TYR ARG LYS MSE GLY ALA ASP LYS SER GLY SEQRES 5 B 143 ILE ASP ALA VAL LEU GLU ILE ARG GLN ASP LEU LEU GLU SEQRES 6 B 143 ASP PRO ASN ALA VAL ALA ILE TYR GLY TYR LYS GLN LEU SEQRES 7 B 143 PRO ALA SER VAL SER ASN HIS ILE SER ARG ILE LEU SER SEQRES 8 B 143 ASP TYR LEU SER ASP LYS LYS ILE ALA SER TYR ASN ILE SEQRES 9 B 143 PRO ASP ILE LYS GLN ILE LEU ALA ASP SER LYS ILE GLU SEQRES 10 B 143 LEU SER VAL HIS THR TYR LYS TRP SER GLU ASP GLY THR SEQRES 11 B 143 ASN GLU ARG THR SER GLY GLU LEU ALA SER GLY ILE SER MODRES 2P0S MSE A 49 MET SELENOMETHIONINE MODRES 2P0S MSE A 86 MET SELENOMETHIONINE MODRES 2P0S MSE B 49 MET SELENOMETHIONINE MODRES 2P0S MSE B 86 MET SELENOMETHIONINE HET MSE A 49 8 HET MSE A 86 8 HET MSE B 49 8 HET MSE B 86 8 HET MG A 401 1 HET ACT A 501 4 HET FMT B 601 3 HET FMT A 602 3 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM FMT FORMIC ACID FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 MG MG 2+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 FMT 2(C H2 O2) FORMUL 7 HOH *185(H2 O) HELIX 1 1 TYR A 61 LYS A 66 5 6 HELIX 2 2 THR A 79 GLY A 92 1 14 HELIX 3 3 PRO A 119 SER A 141 1 23 HELIX 4 4 ASP A 146 LYS A 155 1 10 HELIX 5 5 TYR B 61 PHE B 65 5 5 HELIX 6 6 THR B 79 GLY B 87 1 9 HELIX 7 7 GLY B 87 GLY B 92 1 6 HELIX 8 8 PRO B 119 SER B 141 1 23 HELIX 9 9 ASP B 146 LYS B 155 1 10 SHEET 1 A 5 ARG A 72 HIS A 75 0 SHEET 2 A 5 THR A 51 ASP A 56 1 N ILE A 54 O VAL A 74 SHEET 3 A 5 ALA A 95 ILE A 99 1 O LEU A 97 N ALA A 55 SHEET 4 A 5 VAL A 110 GLY A 114 -1 O ALA A 111 N GLU A 98 SHEET 5 A 5 HIS B 161 LYS B 164 1 O TYR B 163 N ILE A 112 SHEET 1 B 5 THR A 162 LYS A 164 0 SHEET 2 B 5 VAL B 110 GLY B 114 1 O ILE B 112 N TYR A 163 SHEET 3 B 5 ALA B 95 ILE B 99 -1 N GLU B 98 O ALA B 111 SHEET 4 B 5 LYS B 50 ASP B 56 1 N ALA B 55 O LEU B 97 SHEET 5 B 5 PHE B 71 HIS B 75 1 O ARG B 72 N ILE B 52 LINK C ASP A 48 N MSE A 49 1555 1555 1.35 LINK C MSE A 49 N LYS A 50 1555 1555 1.35 LINK C LYS A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N GLY A 87 1555 1555 1.32 LINK MG MG A 401 O HOH A 621 1555 1555 2.09 LINK MG MG A 401 OD2 ASP A 102 1555 1555 1.99 LINK MG MG A 401 O HOH A 686 1555 1555 2.24 LINK MG MG A 401 O HOH A 688 1555 1555 2.07 LINK MG MG A 401 O HOH A 687 1555 1555 2.13 LINK MG MG A 401 O HOH A 673 1555 1555 2.21 LINK C ASP B 48 N MSE B 49 1555 1555 1.33 LINK C MSE B 49 N LYS B 50 1555 1555 1.33 LINK C LYS B 85 N MSE B 86 1555 1555 1.35 LINK C MSE B 86 N GLY B 87 1555 1555 1.32 SITE 1 AC1 6 ASP A 102 HOH A 621 HOH A 673 HOH A 686 SITE 2 AC1 6 HOH A 687 HOH A 688 SITE 1 AC2 5 GLU A 70 ASN A 124 HIS A 125 HIS B 125 SITE 2 AC2 5 ARG B 128 SITE 1 AC3 4 TYR A 115 TRP B 165 SER B 166 HOH B 605 SITE 1 AC4 3 HOH A 631 HOH A 689 PRO B 107 CRYST1 36.880 59.965 110.035 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009088 0.00000