data_2P0T # _entry.id 2P0T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2P0T RCSB RCSB041824 WWPDB D_1000041824 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC85033 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2P0T _pdbx_database_status.recvd_initial_deposition_date 2007-03-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Bigelow, L.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of a conserved putative protein from Pseudomonas syringae pv. tomato str. DC3000' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Bigelow, L.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2P0T _cell.length_a 47.848 _cell.length_b 47.848 _cell.length_c 127.822 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P0T _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UPF0307 protein PSPTO_4464' 20540.098 1 ? ? ? ? 2 non-polymer syn 'FORMIC ACID' 46.025 3 ? ? ? ? 3 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 4 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)VDSYDDSLDGEKSKTQVKRELHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIG KL(MSE)RDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARN KPPATSRKIFKYIRELDELQRGLR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMVDSYDDSLDGEKSKTQVKRELHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIGKLMR DQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRK IFKYIRELDELQRGLR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC85033 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 VAL n 1 6 ASP n 1 7 SER n 1 8 TYR n 1 9 ASP n 1 10 ASP n 1 11 SER n 1 12 LEU n 1 13 ASP n 1 14 GLY n 1 15 GLU n 1 16 LYS n 1 17 SER n 1 18 LYS n 1 19 THR n 1 20 GLN n 1 21 VAL n 1 22 LYS n 1 23 ARG n 1 24 GLU n 1 25 LEU n 1 26 HIS n 1 27 ALA n 1 28 LEU n 1 29 VAL n 1 30 ASP n 1 31 LEU n 1 32 GLY n 1 33 GLU n 1 34 ARG n 1 35 LEU n 1 36 THR n 1 37 THR n 1 38 LEU n 1 39 LYS n 1 40 ALA n 1 41 ASP n 1 42 VAL n 1 43 LEU n 1 44 ALA n 1 45 LYS n 1 46 LEU n 1 47 PRO n 1 48 LEU n 1 49 THR n 1 50 ASP n 1 51 ALA n 1 52 LEU n 1 53 ARG n 1 54 LYS n 1 55 ALA n 1 56 LEU n 1 57 ALA n 1 58 GLU n 1 59 ALA n 1 60 PRO n 1 61 LYS n 1 62 HIS n 1 63 THR n 1 64 ALA n 1 65 ASN n 1 66 ILE n 1 67 ALA n 1 68 ARG n 1 69 LYS n 1 70 ARG n 1 71 HIS n 1 72 ILE n 1 73 LEU n 1 74 PHE n 1 75 ILE n 1 76 GLY n 1 77 LYS n 1 78 LEU n 1 79 MSE n 1 80 ARG n 1 81 ASP n 1 82 GLN n 1 83 ASP n 1 84 GLN n 1 85 GLU n 1 86 ALA n 1 87 ILE n 1 88 LEU n 1 89 VAL n 1 90 LEU n 1 91 LEU n 1 92 ASP n 1 93 GLN n 1 94 LEU n 1 95 ASP n 1 96 ALA n 1 97 SER n 1 98 THR n 1 99 ARG n 1 100 GLN n 1 101 TYR n 1 102 ASN n 1 103 GLU n 1 104 ARG n 1 105 PHE n 1 106 HIS n 1 107 ASN n 1 108 LEU n 1 109 GLU n 1 110 ARG n 1 111 TRP n 1 112 ARG n 1 113 ASP n 1 114 ARG n 1 115 LEU n 1 116 ILE n 1 117 ALA n 1 118 GLY n 1 119 ASP n 1 120 ASP n 1 121 ALA n 1 122 ASP n 1 123 LEU n 1 124 GLU n 1 125 LYS n 1 126 PHE n 1 127 VAL n 1 128 ILE n 1 129 GLU n 1 130 TYR n 1 131 PRO n 1 132 ASP n 1 133 ALA n 1 134 ASP n 1 135 ARG n 1 136 GLN n 1 137 GLN n 1 138 LEU n 1 139 ARG n 1 140 SER n 1 141 LEU n 1 142 ILE n 1 143 ARG n 1 144 GLN n 1 145 ALA n 1 146 GLN n 1 147 HIS n 1 148 GLU n 1 149 VAL n 1 150 ALA n 1 151 ARG n 1 152 ASN n 1 153 LYS n 1 154 PRO n 1 155 PRO n 1 156 ALA n 1 157 THR n 1 158 SER n 1 159 ARG n 1 160 LYS n 1 161 ILE n 1 162 PHE n 1 163 LYS n 1 164 TYR n 1 165 ILE n 1 166 ARG n 1 167 GLU n 1 168 LEU n 1 169 ASP n 1 170 GLU n 1 171 LEU n 1 172 GLN n 1 173 ARG n 1 174 GLY n 1 175 LEU n 1 176 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pseudomonas _entity_src_gen.pdbx_gene_src_gene PSPTO_4464 _entity_src_gen.gene_src_species 'Pseudomonas syringae group genomosp. 3' _entity_src_gen.gene_src_strain DC3000 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas syringae pv. tomato' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 223283 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y4464_PSESM _struct_ref.pdbx_db_accession Q87WS9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVDSYDDSLDGEKSKTQVKRELHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHILFIGKLMRDQD QEAILVLLDQLDASTRQYNERFHNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFK YIRELDELQRGLR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2P0T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 176 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q87WS9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 173 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 173 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2P0T SER A 1 ? UNP Q87WS9 ? ? 'CLONING ARTIFACT' -2 1 1 2P0T ASN A 2 ? UNP Q87WS9 ? ? 'CLONING ARTIFACT' -1 2 1 2P0T ALA A 3 ? UNP Q87WS9 ? ? 'CLONING ARTIFACT' 0 3 1 2P0T MSE A 4 ? UNP Q87WS9 MET 1 'MODIFIED RESIDUE' 1 4 1 2P0T MSE A 79 ? UNP Q87WS9 MET 76 'MODIFIED RESIDUE' 76 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FMT non-polymer . 'FORMIC ACID' ? 'C H2 O2' 46.025 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2P0T _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '30% PEG1000, 0.1M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-12-03 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97929 # _reflns.entry_id 2P0T _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.19 _reflns.d_resolution_low 41.45 _reflns.number_all 9156 _reflns.number_obs 9156 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 44 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.19 _reflns_shell.d_res_low 2.28 _reflns_shell.percent_possible_all 94.1 _reflns_shell.Rmerge_I_obs 0.745 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 6.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 846 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2P0T _refine.ls_number_reflns_obs 8428 _refine.ls_number_reflns_all 8428 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.45 _refine.ls_d_res_high 2.19 _refine.ls_percent_reflns_obs 98.67 _refine.ls_R_factor_obs 0.22127 _refine.ls_R_factor_all 0.22127 _refine.ls_R_factor_R_work 0.21609 _refine.ls_R_factor_R_free 0.28484 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.6 _refine.ls_number_reflns_R_free 694 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 61.163 _refine.aniso_B[1][1] 0.03 _refine.aniso_B[2][2] 0.03 _refine.aniso_B[3][3] -0.05 _refine.aniso_B[1][2] 0.02 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.302 _refine.pdbx_overall_ESU_R_Free 0.250 _refine.overall_SU_ML 0.196 _refine.overall_SU_B 16.031 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1216 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1250 _refine_hist.d_res_high 2.19 _refine_hist.d_res_low 41.45 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.031 0.022 ? 1269 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.550 1.983 ? 1701 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.442 5.000 ? 150 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.284 22.985 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22.869 15.000 ? 243 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 25.272 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.238 0.200 ? 191 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.020 ? 945 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.259 0.200 ? 535 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.311 0.200 ? 840 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.163 0.200 ? 44 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.300 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.119 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.391 1.500 ? 802 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.131 2.000 ? 1211 'X-RAY DIFFRACTION' ? r_scbond_it 3.678 3.000 ? 535 'X-RAY DIFFRACTION' ? r_scangle_it 5.438 4.500 ? 490 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.19 _refine_ls_shell.d_res_low 2.25 _refine_ls_shell.number_reflns_R_work 549 _refine_ls_shell.R_factor_R_work 0.234 _refine_ls_shell.percent_reflns_obs 92.05 _refine_ls_shell.R_factor_R_free 0.34 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 602 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2P0T _struct.title 'Structural Genomics, the crystal structure of a conserved putative protein from Pseudomonas syringae pv. tomato str. DC3000' _struct.pdbx_descriptor 'UPF0307 protein PSPTO_4464' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P0T _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;APC85033, conserved putative protein, Pseudomonas syringae pv. tomato str. DC3000, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'Experimentally unknown' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 25 ? THR A 36 ? LEU A 22 THR A 33 1 ? 12 HELX_P HELX_P2 2 LYS A 39 ? ALA A 44 ? LYS A 36 ALA A 41 1 ? 6 HELX_P HELX_P3 3 THR A 49 ? ALA A 59 ? THR A 46 ALA A 56 1 ? 11 HELX_P HELX_P4 4 PRO A 60 ? HIS A 62 ? PRO A 57 HIS A 59 5 ? 3 HELX_P HELX_P5 5 ALA A 64 ? MSE A 79 ? ALA A 61 MSE A 76 1 ? 16 HELX_P HELX_P6 6 ARG A 80 ? GLN A 82 ? ARG A 77 GLN A 79 5 ? 3 HELX_P HELX_P7 7 ASP A 83 ? GLY A 118 ? ASP A 80 GLY A 115 1 ? 36 HELX_P HELX_P8 8 ASP A 119 ? TYR A 130 ? ASP A 116 TYR A 127 1 ? 12 HELX_P HELX_P9 9 ASP A 134 ? ARG A 151 ? ASP A 131 ARG A 148 1 ? 18 HELX_P HELX_P10 10 PRO A 155 ? GLU A 170 ? PRO A 152 GLU A 167 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 78 C ? ? ? 1_555 A MSE 79 N ? ? A LEU 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.315 ? covale2 covale ? ? A MSE 79 C ? ? ? 1_555 A ARG 80 N ? ? A MSE 76 A ARG 77 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE FMT A 174' AC2 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE FMT A 175' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE FMT A 176' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE PEG A 177' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 109 ? GLU A 106 . ? 1_555 ? 2 AC1 3 ARG A 112 ? ARG A 109 . ? 1_555 ? 3 AC1 3 PHE A 162 ? PHE A 159 . ? 1_555 ? 4 AC2 1 LEU A 171 ? LEU A 168 . ? 1_555 ? 5 AC3 4 ARG A 139 ? ARG A 136 . ? 5_544 ? 6 AC3 4 ARG A 143 ? ARG A 140 . ? 5_544 ? 7 AC3 4 LEU A 168 ? LEU A 165 . ? 1_555 ? 8 AC3 4 GLU A 170 ? GLU A 167 . ? 1_555 ? 9 AC4 5 ASN A 107 ? ASN A 104 . ? 1_555 ? 10 AC4 5 ARG A 110 ? ARG A 107 . ? 1_555 ? 11 AC4 5 TRP A 111 ? TRP A 108 . ? 1_555 ? 12 AC4 5 ARG A 114 ? ARG A 111 . ? 1_555 ? 13 AC4 5 HOH F . ? HOH A 182 . ? 1_555 ? # _database_PDB_matrix.entry_id 2P0T _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2P0T _atom_sites.fract_transf_matrix[1][1] 0.020900 _atom_sites.fract_transf_matrix[1][2] 0.012066 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024133 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007823 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 VAL 5 2 ? ? ? A . n A 1 6 ASP 6 3 ? ? ? A . n A 1 7 SER 7 4 ? ? ? A . n A 1 8 TYR 8 5 ? ? ? A . n A 1 9 ASP 9 6 ? ? ? A . n A 1 10 ASP 10 7 ? ? ? A . n A 1 11 SER 11 8 ? ? ? A . n A 1 12 LEU 12 9 ? ? ? A . n A 1 13 ASP 13 10 ? ? ? A . n A 1 14 GLY 14 11 ? ? ? A . n A 1 15 GLU 15 12 ? ? ? A . n A 1 16 LYS 16 13 ? ? ? A . n A 1 17 SER 17 14 ? ? ? A . n A 1 18 LYS 18 15 ? ? ? A . n A 1 19 THR 19 16 ? ? ? A . n A 1 20 GLN 20 17 ? ? ? A . n A 1 21 VAL 21 18 ? ? ? A . n A 1 22 LYS 22 19 ? ? ? A . n A 1 23 ARG 23 20 ? ? ? A . n A 1 24 GLU 24 21 ? ? ? A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 HIS 26 23 23 HIS HIS A . n A 1 27 ALA 27 24 24 ALA ALA A . n A 1 28 LEU 28 25 25 LEU LEU A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 ASP 30 27 27 ASP ASP A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 GLY 32 29 29 GLY GLY A . n A 1 33 GLU 33 30 30 GLU GLU A . n A 1 34 ARG 34 31 31 ARG ARG A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 THR 36 33 33 THR THR A . n A 1 37 THR 37 34 34 THR THR A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 LYS 39 36 36 LYS LYS A . n A 1 40 ALA 40 37 37 ALA ALA A . n A 1 41 ASP 41 38 38 ASP ASP A . n A 1 42 VAL 42 39 39 VAL VAL A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 LYS 45 42 42 LYS LYS A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 PRO 47 44 44 PRO PRO A . n A 1 48 LEU 48 45 45 LEU LEU A . n A 1 49 THR 49 46 46 THR THR A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 LEU 52 49 49 LEU LEU A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 LYS 54 51 51 LYS LYS A . n A 1 55 ALA 55 52 52 ALA ALA A . n A 1 56 LEU 56 53 53 LEU LEU A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 GLU 58 55 55 GLU GLU A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 PRO 60 57 57 PRO PRO A . n A 1 61 LYS 61 58 58 LYS LYS A . n A 1 62 HIS 62 59 59 HIS HIS A . n A 1 63 THR 63 60 60 THR THR A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 ASN 65 62 62 ASN ASN A . n A 1 66 ILE 66 63 63 ILE ILE A . n A 1 67 ALA 67 64 64 ALA ALA A . n A 1 68 ARG 68 65 65 ARG ARG A . n A 1 69 LYS 69 66 66 LYS LYS A . n A 1 70 ARG 70 67 67 ARG ARG A . n A 1 71 HIS 71 68 68 HIS HIS A . n A 1 72 ILE 72 69 69 ILE ILE A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 PHE 74 71 71 PHE PHE A . n A 1 75 ILE 75 72 72 ILE ILE A . n A 1 76 GLY 76 73 73 GLY GLY A . n A 1 77 LYS 77 74 74 LYS LYS A . n A 1 78 LEU 78 75 75 LEU LEU A . n A 1 79 MSE 79 76 76 MSE MSE A . n A 1 80 ARG 80 77 77 ARG ARG A . n A 1 81 ASP 81 78 78 ASP ASP A . n A 1 82 GLN 82 79 79 GLN GLN A . n A 1 83 ASP 83 80 80 ASP ASP A . n A 1 84 GLN 84 81 81 GLN GLN A . n A 1 85 GLU 85 82 82 GLU GLU A . n A 1 86 ALA 86 83 83 ALA ALA A . n A 1 87 ILE 87 84 84 ILE ILE A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 VAL 89 86 86 VAL VAL A . n A 1 90 LEU 90 87 87 LEU LEU A . n A 1 91 LEU 91 88 88 LEU LEU A . n A 1 92 ASP 92 89 89 ASP ASP A . n A 1 93 GLN 93 90 90 GLN GLN A . n A 1 94 LEU 94 91 91 LEU LEU A . n A 1 95 ASP 95 92 92 ASP ASP A . n A 1 96 ALA 96 93 93 ALA ALA A . n A 1 97 SER 97 94 94 SER SER A . n A 1 98 THR 98 95 95 THR THR A . n A 1 99 ARG 99 96 96 ARG ARG A . n A 1 100 GLN 100 97 97 GLN GLN A . n A 1 101 TYR 101 98 98 TYR TYR A . n A 1 102 ASN 102 99 99 ASN ASN A . n A 1 103 GLU 103 100 100 GLU GLU A . n A 1 104 ARG 104 101 101 ARG ARG A . n A 1 105 PHE 105 102 102 PHE PHE A . n A 1 106 HIS 106 103 103 HIS HIS A . n A 1 107 ASN 107 104 104 ASN ASN A . n A 1 108 LEU 108 105 105 LEU LEU A . n A 1 109 GLU 109 106 106 GLU GLU A . n A 1 110 ARG 110 107 107 ARG ARG A . n A 1 111 TRP 111 108 108 TRP TRP A . n A 1 112 ARG 112 109 109 ARG ARG A . n A 1 113 ASP 113 110 110 ASP ASP A . n A 1 114 ARG 114 111 111 ARG ARG A . n A 1 115 LEU 115 112 112 LEU LEU A . n A 1 116 ILE 116 113 113 ILE ILE A . n A 1 117 ALA 117 114 114 ALA ALA A . n A 1 118 GLY 118 115 115 GLY GLY A . n A 1 119 ASP 119 116 116 ASP ASP A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 ALA 121 118 118 ALA ALA A . n A 1 122 ASP 122 119 119 ASP ASP A . n A 1 123 LEU 123 120 120 LEU LEU A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 PHE 126 123 123 PHE PHE A . n A 1 127 VAL 127 124 124 VAL VAL A . n A 1 128 ILE 128 125 125 ILE ILE A . n A 1 129 GLU 129 126 126 GLU GLU A . n A 1 130 TYR 130 127 127 TYR TYR A . n A 1 131 PRO 131 128 128 PRO PRO A . n A 1 132 ASP 132 129 129 ASP ASP A . n A 1 133 ALA 133 130 130 ALA ALA A . n A 1 134 ASP 134 131 131 ASP ASP A . n A 1 135 ARG 135 132 132 ARG ARG A . n A 1 136 GLN 136 133 133 GLN GLN A . n A 1 137 GLN 137 134 134 GLN GLN A . n A 1 138 LEU 138 135 135 LEU LEU A . n A 1 139 ARG 139 136 136 ARG ARG A . n A 1 140 SER 140 137 137 SER SER A . n A 1 141 LEU 141 138 138 LEU LEU A . n A 1 142 ILE 142 139 139 ILE ILE A . n A 1 143 ARG 143 140 140 ARG ARG A . n A 1 144 GLN 144 141 141 GLN GLN A . n A 1 145 ALA 145 142 142 ALA ALA A . n A 1 146 GLN 146 143 143 GLN GLN A . n A 1 147 HIS 147 144 144 HIS HIS A . n A 1 148 GLU 148 145 145 GLU GLU A . n A 1 149 VAL 149 146 146 VAL VAL A . n A 1 150 ALA 150 147 147 ALA ALA A . n A 1 151 ARG 151 148 148 ARG ARG A . n A 1 152 ASN 152 149 149 ASN ASN A . n A 1 153 LYS 153 150 150 LYS LYS A . n A 1 154 PRO 154 151 151 PRO PRO A . n A 1 155 PRO 155 152 152 PRO PRO A . n A 1 156 ALA 156 153 153 ALA ALA A . n A 1 157 THR 157 154 154 THR THR A . n A 1 158 SER 158 155 155 SER SER A . n A 1 159 ARG 159 156 156 ARG ARG A . n A 1 160 LYS 160 157 157 LYS LYS A . n A 1 161 ILE 161 158 158 ILE ILE A . n A 1 162 PHE 162 159 159 PHE PHE A . n A 1 163 LYS 163 160 160 LYS LYS A . n A 1 164 TYR 164 161 161 TYR TYR A . n A 1 165 ILE 165 162 162 ILE ILE A . n A 1 166 ARG 166 163 163 ARG ARG A . n A 1 167 GLU 167 164 164 GLU GLU A . n A 1 168 LEU 168 165 165 LEU LEU A . n A 1 169 ASP 169 166 166 ASP ASP A . n A 1 170 GLU 170 167 167 GLU GLU A . n A 1 171 LEU 171 168 168 LEU LEU A . n A 1 172 GLN 172 169 169 GLN GLN A . n A 1 173 ARG 173 170 ? ? ? A . n A 1 174 GLY 174 171 ? ? ? A . n A 1 175 LEU 175 172 ? ? ? A . n A 1 176 ARG 176 173 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT 1 174 1 FMT FMT A . C 2 FMT 1 175 2 FMT FMT A . D 2 FMT 1 176 3 FMT FMT A . E 3 PEG 1 177 1 PEG PEG A . F 4 HOH 1 178 1 HOH HOH A . F 4 HOH 2 179 2 HOH HOH A . F 4 HOH 3 180 4 HOH HOH A . F 4 HOH 4 181 5 HOH HOH A . F 4 HOH 5 182 6 HOH HOH A . F 4 HOH 6 183 7 HOH HOH A . F 4 HOH 7 184 8 HOH HOH A . F 4 HOH 8 185 9 HOH HOH A . F 4 HOH 9 186 10 HOH HOH A . F 4 HOH 10 187 13 HOH HOH A . F 4 HOH 11 188 14 HOH HOH A . F 4 HOH 12 189 15 HOH HOH A . F 4 HOH 13 190 16 HOH HOH A . F 4 HOH 14 191 19 HOH HOH A . F 4 HOH 15 192 21 HOH HOH A . F 4 HOH 16 193 22 HOH HOH A . F 4 HOH 17 194 23 HOH HOH A . F 4 HOH 18 195 24 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 79 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 76 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-03 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 55.0083 -3.9491 7.6197 -0.1393 0.1840 -0.0858 0.0050 -0.0542 -0.0279 5.7029 4.4019 9.6611 0.0842 -2.0201 1.3873 -0.1043 -0.1230 0.5758 0.1475 0.4590 -0.3838 -0.5352 1.5182 -0.3546 'X-RAY DIFFRACTION' 2 ? refined 41.6818 -11.1328 -11.4414 -0.2545 -0.0534 -0.1527 -0.0019 -0.0028 -0.0963 31.4983 0.4383 13.0282 -0.6976 15.2034 -1.8879 -0.2177 0.8633 0.0296 0.0088 -0.0465 -0.2673 0.1731 0.7874 0.2642 'X-RAY DIFFRACTION' 3 ? refined 22.8694 -15.9809 -18.2468 -0.3228 -0.0831 -0.1834 -0.0621 0.0053 0.0094 10.6968 5.7565 3.5458 -2.3644 -0.5532 0.8886 -0.0848 -0.3922 -0.3157 0.2236 0.1391 0.0759 0.0036 -0.0491 -0.0543 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 22 A 25 A 88 A 91 ? 'X-RAY DIFFRACTION' ? 2 2 A 89 A 92 A 105 A 108 ? 'X-RAY DIFFRACTION' ? 3 3 A 106 A 109 A 169 A 172 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 SHELXS phasing . ? 5 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). AUTHORS STATE THAT THE BIOLOGICAL UNIT IS EXPERIMENTALLY UNKNOWN. THE MONOMERIC ASSEMBLY OF THE BIOLOGICAL UNIT SHOWN IN REMARK 350 IS PREDICTED BY THE ANALYSIS OF PROTEIN INTERFACES BASED ON THIS CRYSTAL STRUCTURE. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A GLU 100 ? ? CG A GLU 100 ? ? 1.640 1.517 0.123 0.019 N 2 1 CG A GLU 100 ? ? CD A GLU 100 ? ? 1.633 1.515 0.118 0.015 N 3 1 CD A GLU 100 ? ? OE2 A GLU 100 ? ? 1.332 1.252 0.080 0.011 N 4 1 CB A GLU 106 ? ? CG A GLU 106 ? ? 1.343 1.517 -0.174 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A ASP 38 ? ? CA A ASP 38 ? ? CB A ASP 38 ? ? 98.62 110.60 -11.98 1.80 N 2 1 CB A ASP 129 ? ? CG A ASP 129 ? ? OD1 A ASP 129 ? ? 124.01 118.30 5.71 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 46 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -48.39 _pdbx_validate_torsion.psi 151.15 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A VAL 2 ? A VAL 5 6 1 Y 1 A ASP 3 ? A ASP 6 7 1 Y 1 A SER 4 ? A SER 7 8 1 Y 1 A TYR 5 ? A TYR 8 9 1 Y 1 A ASP 6 ? A ASP 9 10 1 Y 1 A ASP 7 ? A ASP 10 11 1 Y 1 A SER 8 ? A SER 11 12 1 Y 1 A LEU 9 ? A LEU 12 13 1 Y 1 A ASP 10 ? A ASP 13 14 1 Y 1 A GLY 11 ? A GLY 14 15 1 Y 1 A GLU 12 ? A GLU 15 16 1 Y 1 A LYS 13 ? A LYS 16 17 1 Y 1 A SER 14 ? A SER 17 18 1 Y 1 A LYS 15 ? A LYS 18 19 1 Y 1 A THR 16 ? A THR 19 20 1 Y 1 A GLN 17 ? A GLN 20 21 1 Y 1 A VAL 18 ? A VAL 21 22 1 Y 1 A LYS 19 ? A LYS 22 23 1 Y 1 A ARG 20 ? A ARG 23 24 1 Y 1 A GLU 21 ? A GLU 24 25 1 Y 1 A ARG 170 ? A ARG 173 26 1 Y 1 A GLY 171 ? A GLY 174 27 1 Y 1 A LEU 172 ? A LEU 175 28 1 Y 1 A ARG 173 ? A ARG 176 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FORMIC ACID' FMT 3 'DI(HYDROXYETHYL)ETHER' PEG 4 water HOH #