HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-MAR-07 2P12 TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION DUF402 FROM TITLE 2 RHODOCOCCUS SP. RHA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN DUF402; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 GENE: RHA1_RO00977; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS APC7392, BETA-BARREL, RHODOCOCCUS SP. RHA1, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,E.EVDOKIMOVA,M.KUDRITSKA,A.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 18-OCT-17 2P12 1 REMARK REVDAT 3 13-JUL-11 2P12 1 VERSN REVDAT 2 24-FEB-09 2P12 1 VERSN REVDAT 1 03-APR-07 2P12 0 JRNL AUTH Y.KIM,E.EVDOKIMOVA,M.KUDRITSKA,A.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE PROTEIN OF UNCHARACTERIZED JRNL TITL 2 FUNCTION, DUF402 FROM RHODOCOCCUS SP. RHA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 36437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4020 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2710 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 528 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.12000 REMARK 3 B22 (A**2) : 1.18000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3075 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4221 ; 1.596 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 9.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;33.861 ;22.982 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;13.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.625 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2518 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1516 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2052 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 454 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1861 ; 0.951 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2948 ; 1.536 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1394 ; 2.618 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1273 ; 3.879 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9094 9.6763 14.9218 REMARK 3 T TENSOR REMARK 3 T11: -.0312 T22: -.0305 REMARK 3 T33: -.0863 T12: -.0012 REMARK 3 T13: .0063 T23: .0010 REMARK 3 L TENSOR REMARK 3 L11: 1.5310 L22: .2425 REMARK 3 L33: 1.8404 L12: -.0328 REMARK 3 L13: 1.2006 L23: .2133 REMARK 3 S TENSOR REMARK 3 S11: .0525 S12: .0012 S13: -.0523 REMARK 3 S21: .0070 S22: -.0263 S23: -.0035 REMARK 3 S31: .0325 S32: -.1625 S33: -.0262 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9543 8.1522 21.6795 REMARK 3 T TENSOR REMARK 3 T11: -.0441 T22: -.0518 REMARK 3 T33: -.0160 T12: .0023 REMARK 3 T13: .0131 T23: -.0625 REMARK 3 L TENSOR REMARK 3 L11: 2.3298 L22: 1.1937 REMARK 3 L33: .2091 L12: .2182 REMARK 3 L13: .4613 L23: .3736 REMARK 3 S TENSOR REMARK 3 S11: .0140 S12: .2703 S13: -.2640 REMARK 3 S21: -.0229 S22: .1002 S23: -.2374 REMARK 3 S31: -.0545 S32: .0650 S33: -.1142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40684 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 40.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXCD, SHELXD, MLPHARE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS REMARK 280 PH 5.5, 25% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.10150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.10150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 756 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 ASP A 7 REMARK 465 SER A 174 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ALA B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 ASP B 7 REMARK 465 ILE B 8 REMARK 465 SER B 174 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 20 O HOH B 733 2.02 REMARK 500 O HOH A 685 O HOH A 858 2.14 REMARK 500 NH1 ARG A 80 O3 GOL A 603 2.15 REMARK 500 NH1 ARG A 80 O1 GOL A 603 2.16 REMARK 500 O HOH B 799 O HOH B 804 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 865 O HOH B 624 3445 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 35 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASN B 23 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 104 -48.63 81.39 REMARK 500 ARG A 113 -64.83 -128.20 REMARK 500 TYR B 104 -46.80 83.17 REMARK 500 ARG B 113 -64.49 -120.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 22 ASN B 23 140.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7392 RELATED DB: TARGETDB DBREF 2P12 A 1 172 UNP Q0SI31 Q0SI31_RHOSR 1 172 DBREF 2P12 B 1 172 UNP Q0SI31 Q0SI31_RHOSR 1 172 SEQADV 2P12 GLY A -1 UNP Q0SI31 CLONING ARTIFACT SEQADV 2P12 HIS A 0 UNP Q0SI31 CLONING ARTIFACT SEQADV 2P12 MSE A 1 UNP Q0SI31 MET 1 MODIFIED RESIDUE SEQADV 2P12 MSE A 45 UNP Q0SI31 MET 45 MODIFIED RESIDUE SEQADV 2P12 MSE A 124 UNP Q0SI31 MET 124 MODIFIED RESIDUE SEQADV 2P12 MSE A 167 UNP Q0SI31 MET 167 MODIFIED RESIDUE SEQADV 2P12 GLY A 173 UNP Q0SI31 CLONING ARTIFACT SEQADV 2P12 SER A 174 UNP Q0SI31 CLONING ARTIFACT SEQADV 2P12 GLY B -1 UNP Q0SI31 CLONING ARTIFACT SEQADV 2P12 HIS B 0 UNP Q0SI31 CLONING ARTIFACT SEQADV 2P12 MSE B 1 UNP Q0SI31 MET 1 MODIFIED RESIDUE SEQADV 2P12 MSE B 45 UNP Q0SI31 MET 45 MODIFIED RESIDUE SEQADV 2P12 MSE B 124 UNP Q0SI31 MET 124 MODIFIED RESIDUE SEQADV 2P12 MSE B 167 UNP Q0SI31 MET 167 MODIFIED RESIDUE SEQADV 2P12 GLY B 173 UNP Q0SI31 CLONING ARTIFACT SEQADV 2P12 SER B 174 UNP Q0SI31 CLONING ARTIFACT SEQRES 1 A 176 GLY HIS MSE ALA GLY ALA SER HIS ASP ILE HIS PRO PRO SEQRES 2 A 176 LYS VAL GLU TYR PHE ASP LEU ARG ASP HIS THR ASN THR SEQRES 3 A 176 ASP PRO LYS GLY PHE VAL ARG HIS VAL ASP HIS TYR ARG SEQRES 4 A 176 VAL GLU PRO TRP GLY LEU TYR MSE ALA ARG THR SER ASP SEQRES 5 A 176 HIS PRO GLN PHE HIS TYR LEU GLU SER TRP LEU LEU PRO SEQRES 6 A 176 ASP LEU GLY LEU ARG ALA SER ILE PHE HIS TYR HIS PRO SEQRES 7 A 176 TYR HIS GLN ARG ASP GLN ASP HIS TYR VAL ASP ILE GLY SEQRES 8 A 176 THR PHE THR ARG GLY ASP ASP VAL TRP LYS SER GLU ASP SEQRES 9 A 176 HIS TYR LEU ASP LEU VAL VAL ARG THR GLY ARG ASP THR SEQRES 10 A 176 GLU LEU LEU ASP VAL ASP GLU LEU MSE GLU ALA HIS THR SEQRES 11 A 176 THR GLY LEU LEU ASP THR ALA THR ALA GLU GLN ALA ILE SEQRES 12 A 176 LEU THR ALA THR THR ALA ILE ASP GLY ILE ALA ALA HIS SEQRES 13 A 176 GLY HIS ASP LEU GLY ARG TRP LEU ALA SER ILE GLY MSE SEQRES 14 A 176 PRO ILE ASP TRP ARG GLY SER SEQRES 1 B 176 GLY HIS MSE ALA GLY ALA SER HIS ASP ILE HIS PRO PRO SEQRES 2 B 176 LYS VAL GLU TYR PHE ASP LEU ARG ASP HIS THR ASN THR SEQRES 3 B 176 ASP PRO LYS GLY PHE VAL ARG HIS VAL ASP HIS TYR ARG SEQRES 4 B 176 VAL GLU PRO TRP GLY LEU TYR MSE ALA ARG THR SER ASP SEQRES 5 B 176 HIS PRO GLN PHE HIS TYR LEU GLU SER TRP LEU LEU PRO SEQRES 6 B 176 ASP LEU GLY LEU ARG ALA SER ILE PHE HIS TYR HIS PRO SEQRES 7 B 176 TYR HIS GLN ARG ASP GLN ASP HIS TYR VAL ASP ILE GLY SEQRES 8 B 176 THR PHE THR ARG GLY ASP ASP VAL TRP LYS SER GLU ASP SEQRES 9 B 176 HIS TYR LEU ASP LEU VAL VAL ARG THR GLY ARG ASP THR SEQRES 10 B 176 GLU LEU LEU ASP VAL ASP GLU LEU MSE GLU ALA HIS THR SEQRES 11 B 176 THR GLY LEU LEU ASP THR ALA THR ALA GLU GLN ALA ILE SEQRES 12 B 176 LEU THR ALA THR THR ALA ILE ASP GLY ILE ALA ALA HIS SEQRES 13 B 176 GLY HIS ASP LEU GLY ARG TRP LEU ALA SER ILE GLY MSE SEQRES 14 B 176 PRO ILE ASP TRP ARG GLY SER MODRES 2P12 MSE A 45 MET SELENOMETHIONINE MODRES 2P12 MSE A 124 MET SELENOMETHIONINE MODRES 2P12 MSE A 167 MET SELENOMETHIONINE MODRES 2P12 MSE B 45 MET SELENOMETHIONINE MODRES 2P12 MSE B 124 MET SELENOMETHIONINE MODRES 2P12 MSE B 167 MET SELENOMETHIONINE HET MSE A 45 8 HET MSE A 124 8 HET MSE A 167 8 HET MSE B 45 8 HET MSE B 124 8 HET MSE B 167 8 HET ACY A 601 4 HET GOL A 603 6 HET ACY B 602 4 HETNAM MSE SELENOMETHIONINE HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 ACY 2(C2 H4 O2) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *528(H2 O) HELIX 1 1 PRO A 63 LEU A 65 5 3 HELIX 2 2 ASP A 119 THR A 129 1 11 HELIX 3 3 ASP A 133 HIS A 154 1 22 HELIX 4 4 ASP A 157 ILE A 165 1 9 HELIX 5 5 ASP B 119 THR B 129 1 11 HELIX 6 6 ASP B 133 HIS B 154 1 22 HELIX 7 7 ASP B 157 ILE B 165 1 9 SHEET 1 A 9 VAL A 30 HIS A 32 0 SHEET 2 A 9 THR A 22 THR A 24 -1 N ASN A 23 O ARG A 31 SHEET 3 A 9 VAL A 13 ASP A 17 -1 N ASP A 17 O THR A 22 SHEET 4 A 9 VAL A 97 ARG A 110 -1 O SER A 100 N GLU A 14 SHEET 5 A 9 HIS A 84 THR A 92 -1 N ILE A 88 O HIS A 103 SHEET 6 A 9 LEU A 67 TYR A 74 -1 N ARG A 68 O ASP A 87 SHEET 7 A 9 PHE A 54 LEU A 62 -1 N LEU A 62 O LEU A 67 SHEET 8 A 9 GLY A 42 THR A 48 -1 N ARG A 47 O LEU A 57 SHEET 9 A 9 HIS A 35 GLU A 39 -1 N ARG A 37 O TYR A 44 SHEET 1 B 5 VAL A 30 HIS A 32 0 SHEET 2 B 5 THR A 22 THR A 24 -1 N ASN A 23 O ARG A 31 SHEET 3 B 5 VAL A 13 ASP A 17 -1 N ASP A 17 O THR A 22 SHEET 4 B 5 VAL A 97 ARG A 110 -1 O SER A 100 N GLU A 14 SHEET 5 B 5 ASP A 114 LEU A 118 -1 O LEU A 118 N ASP A 106 SHEET 1 C 9 VAL B 30 HIS B 32 0 SHEET 2 C 9 THR B 22 THR B 24 -1 N ASN B 23 O ARG B 31 SHEET 3 C 9 VAL B 13 ASP B 17 -1 N ASP B 17 O THR B 22 SHEET 4 C 9 VAL B 97 ARG B 110 -1 O TRP B 98 N PHE B 16 SHEET 5 C 9 HIS B 84 THR B 92 -1 N THR B 92 O LYS B 99 SHEET 6 C 9 LEU B 67 TYR B 74 -1 N ARG B 68 O ASP B 87 SHEET 7 C 9 PHE B 54 LEU B 62 -1 N LEU B 62 O LEU B 67 SHEET 8 C 9 GLY B 42 THR B 48 -1 N LEU B 43 O LEU B 61 SHEET 9 C 9 HIS B 35 GLU B 39 -1 N GLU B 39 O GLY B 42 SHEET 1 D 5 VAL B 30 HIS B 32 0 SHEET 2 D 5 THR B 22 THR B 24 -1 N ASN B 23 O ARG B 31 SHEET 3 D 5 VAL B 13 ASP B 17 -1 N ASP B 17 O THR B 22 SHEET 4 D 5 VAL B 97 ARG B 110 -1 O TRP B 98 N PHE B 16 SHEET 5 D 5 ASP B 114 LEU B 118 -1 O LEU B 118 N ASP B 106 LINK C TYR A 44 N MSE A 45 1555 1555 1.34 LINK C MSE A 45 N ALA A 46 1555 1555 1.33 LINK C LEU A 123 N MSE A 124 1555 1555 1.34 LINK C MSE A 124 N AGLU A 125 1555 1555 1.33 LINK C MSE A 124 N BGLU A 125 1555 1555 1.35 LINK C GLY A 166 N MSE A 167 1555 1555 1.34 LINK C MSE A 167 N PRO A 168 1555 1555 1.35 LINK C TYR B 44 N MSE B 45 1555 1555 1.33 LINK C MSE B 45 N ALA B 46 1555 1555 1.34 LINK C LEU B 123 N MSE B 124 1555 1555 1.34 LINK C MSE B 124 N BGLU B 125 1555 1555 1.34 LINK C MSE B 124 N AGLU B 125 1555 1555 1.33 LINK C GLY B 166 N MSE B 167 1555 1555 1.33 LINK C MSE B 167 N PRO B 168 1555 1555 1.35 SITE 1 AC1 3 ARG A 47 SER A 49 HOH A 781 SITE 1 AC2 2 ARG B 47 SER B 49 SITE 1 AC3 5 PHE A 72 TYR A 74 ARG A 80 GLN A 82 SITE 2 AC3 5 TYR A 85 CRYST1 132.203 38.980 70.721 90.00 107.69 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007564 0.000000 0.002412 0.00000 SCALE2 0.000000 0.025654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014842 0.00000