data_2P13 # _entry.id 2P13 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2P13 RCSB RCSB041834 WWPDB D_1000041834 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC86385.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2P13 _pdbx_database_status.recvd_initial_deposition_date 2007-03-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Hatzos, C.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of the transporter associated domain CorC_HlyC from Nitrosomonas europaea' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Hatzos, C.' 2 primary 'Clancy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2P13 _cell.length_a 49.397 _cell.length_b 49.397 _cell.length_c 127.094 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P13 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CBS domain' 10185.236 2 ? ? 'CorC_HlyC Domain' ? 2 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 3 water nat water 18.015 179 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAEEKVVAEQQADGTWL(MSE)DGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSV NKHNIGKVRVHRTQ ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAEEKVVAEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHN IGKVRVHRTQ ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC86385.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 GLU n 1 5 GLU n 1 6 LYS n 1 7 VAL n 1 8 VAL n 1 9 ALA n 1 10 GLU n 1 11 GLN n 1 12 GLN n 1 13 ALA n 1 14 ASP n 1 15 GLY n 1 16 THR n 1 17 TRP n 1 18 LEU n 1 19 MSE n 1 20 ASP n 1 21 GLY n 1 22 TRP n 1 23 ILE n 1 24 SER n 1 25 ILE n 1 26 ARG n 1 27 LYS n 1 28 ALA n 1 29 SER n 1 30 ASN n 1 31 LEU n 1 32 LEU n 1 33 GLU n 1 34 HIS n 1 35 ASP n 1 36 LEU n 1 37 VAL n 1 38 ASP n 1 39 GLU n 1 40 ALA n 1 41 GLU n 1 42 ARG n 1 43 TYR n 1 44 SER n 1 45 THR n 1 46 LEU n 1 47 GLY n 1 48 GLY n 1 49 TYR n 1 50 LEU n 1 51 LEU n 1 52 TRP n 1 53 GLN n 1 54 PHE n 1 55 GLY n 1 56 TYR n 1 57 ILE n 1 58 PRO n 1 59 ALA n 1 60 ALA n 1 61 GLY n 1 62 GLU n 1 63 GLN n 1 64 ILE n 1 65 THR n 1 66 VAL n 1 67 ASP n 1 68 GLY n 1 69 LEU n 1 70 ILE n 1 71 PHE n 1 72 GLU n 1 73 ILE n 1 74 VAL n 1 75 SER n 1 76 VAL n 1 77 ASN n 1 78 LYS n 1 79 HIS n 1 80 ASN n 1 81 ILE n 1 82 GLY n 1 83 LYS n 1 84 VAL n 1 85 ARG n 1 86 VAL n 1 87 HIS n 1 88 ARG n 1 89 THR n 1 90 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nitrosomonas _entity_src_gen.pdbx_gene_src_gene NE2227 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'IFO 14298' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nitrosomonas europaea' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 915 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 19718 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q82SS8_NITEU _struct_ref.pdbx_db_accession Q82SS8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EEKVVAEQQADGTWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHNIGK VRVHRTQ ; _struct_ref.pdbx_align_begin 430 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2P13 A 4 ? 90 ? Q82SS8 430 ? 516 ? 430 516 2 1 2P13 B 4 ? 90 ? Q82SS8 430 ? 516 ? 430 516 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2P13 SER A 1 ? UNP Q82SS8 ? ? 'CLONING ARTIFACT' 427 1 1 2P13 ASN A 2 ? UNP Q82SS8 ? ? 'CLONING ARTIFACT' 428 2 1 2P13 ALA A 3 ? UNP Q82SS8 ? ? 'CLONING ARTIFACT' 429 3 1 2P13 MSE A 19 ? UNP Q82SS8 MET 445 'MODIFIED RESIDUE' 445 4 2 2P13 SER B 1 ? UNP Q82SS8 ? ? 'CLONING ARTIFACT' 427 5 2 2P13 ASN B 2 ? UNP Q82SS8 ? ? 'CLONING ARTIFACT' 428 6 2 2P13 ALA B 3 ? UNP Q82SS8 ? ? 'CLONING ARTIFACT' 429 7 2 2P13 MSE B 19 ? UNP Q82SS8 MET 445 'MODIFIED RESIDUE' 445 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2P13 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '10% PEG 8000, 0.1M Tris-HCl pH 7.0, 0.5% Ethyl acetate, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-02-03 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97888 1.0 2 0.97934 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97888, 0.97934' # _reflns.entry_id 2P13 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 42.80 _reflns.number_all 22388 _reflns.number_obs 22388 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 17.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.71 _reflns_shell.percent_possible_all 94.1 _reflns_shell.Rmerge_I_obs 0.684 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 8.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2075 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2P13 _refine.ls_number_reflns_obs 20085 _refine.ls_number_reflns_all 20085 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.80 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 99.30 _refine.ls_R_factor_obs 0.204 _refine.ls_R_factor_all 0.204 _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 2252 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 40.636 _refine.aniso_B[1][1] -0.09 _refine.aniso_B[2][2] -0.09 _refine.aniso_B[3][3] 0.14 _refine.aniso_B[1][2] -0.05 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.119 _refine.pdbx_overall_ESU_R_Free 0.119 _refine.overall_SU_ML 0.075 _refine.overall_SU_B 4.173 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1339 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 179 _refine_hist.number_atoms_total 1522 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 42.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 1518 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.642 1.928 ? 2073 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.519 5.000 ? 193 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.726 23.836 ? 73 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.639 15.000 ? 264 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.218 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.141 0.200 ? 226 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1176 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.234 0.200 ? 746 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.310 0.200 ? 1032 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.204 0.200 ? 160 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.259 0.200 ? 74 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.156 0.200 ? 26 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.228 1.500 ? 942 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.869 2.000 ? 1481 'X-RAY DIFFRACTION' ? r_scbond_it 2.666 3.000 ? 671 'X-RAY DIFFRACTION' ? r_scangle_it 3.941 4.500 ? 592 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.65 _refine_ls_shell.d_res_low 1.69 _refine_ls_shell.number_reflns_R_work 1325 _refine_ls_shell.R_factor_R_work 0.328 _refine_ls_shell.percent_reflns_obs 92.24 _refine_ls_shell.R_factor_R_free 0.38 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 160 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1485 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2P13 _struct.title 'Transporter associated domain CorC_HlyC from Nitrosomonas europaea' _struct.pdbx_descriptor 'CBS domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P13 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;alpha-beta structure, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 24 ? GLU A 33 ? SER A 450 GLU A 459 1 ? 10 HELX_P HELX_P2 2 THR A 45 ? GLY A 55 ? THR A 471 GLY A 481 1 ? 11 HELX_P HELX_P3 3 SER B 24 ? GLU B 33 ? SER B 450 GLU B 459 1 ? 10 HELX_P HELX_P4 4 THR B 45 ? GLY B 55 ? THR B 471 GLY B 481 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 18 C A ? ? 1_555 A MSE 19 N ? ? A LEU 444 A MSE 445 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A LEU 18 C B ? ? 1_555 A MSE 19 N ? ? A LEU 444 A MSE 445 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A MSE 19 C ? ? ? 1_555 A ASP 20 N ? ? A MSE 445 A ASP 446 1_555 ? ? ? ? ? ? ? 1.321 ? covale4 covale ? ? B LEU 18 C B ? ? 1_555 B MSE 19 N ? ? B LEU 444 B MSE 445 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? B LEU 18 C A ? ? 1_555 B MSE 19 N ? ? B LEU 444 B MSE 445 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale ? ? B MSE 19 C ? ? ? 1_555 B ASP 20 N ? ? B MSE 445 B ASP 446 1_555 ? ? ? ? ? ? ? 1.323 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 9 ? GLN A 11 ? ALA A 435 GLN A 437 A 2 TRP A 17 ? ASP A 20 ? TRP A 443 ASP A 446 A 3 LYS A 83 ? ARG A 88 ? LYS A 509 ARG A 514 A 4 LEU A 69 ? ILE A 73 ? LEU A 495 ILE A 499 A 5 GLN A 63 ? VAL A 66 ? GLN A 489 VAL A 492 B 1 ALA B 9 ? GLN B 11 ? ALA B 435 GLN B 437 B 2 TRP B 17 ? ASP B 20 ? TRP B 443 ASP B 446 B 3 LYS B 83 ? ARG B 88 ? LYS B 509 ARG B 514 B 4 LEU B 69 ? ILE B 73 ? LEU B 495 ILE B 499 B 5 GLN B 63 ? VAL B 66 ? GLN B 489 VAL B 492 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 10 ? N GLU A 436 O LEU A 18 ? O LEU A 444 A 2 3 N MSE A 19 ? N MSE A 445 O VAL A 84 ? O VAL A 510 A 3 4 O HIS A 87 ? O HIS A 513 N ILE A 70 ? N ILE A 496 A 4 5 O PHE A 71 ? O PHE A 497 N ILE A 64 ? N ILE A 490 B 1 2 N GLU B 10 ? N GLU B 436 O LEU B 18 ? O LEU B 444 B 2 3 N MSE B 19 ? N MSE B 445 O VAL B 84 ? O VAL B 510 B 3 4 O HIS B 87 ? O HIS B 513 N ILE B 70 ? N ILE B 496 B 4 5 O PHE B 71 ? O PHE B 497 N ILE B 64 ? N ILE B 490 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE ACY A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 68 . ? 1_555 ? 2 AC1 6 ASN A 30 ? ASN A 456 . ? 1_555 ? 3 AC1 6 LEU A 31 ? LEU A 457 . ? 1_555 ? 4 AC1 6 GLU A 33 ? GLU A 459 . ? 1_555 ? 5 AC1 6 ASN B 30 ? ASN B 456 . ? 1_565 ? 6 AC1 6 LEU B 31 ? LEU B 457 . ? 1_565 ? # _database_PDB_matrix.entry_id 2P13 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2P13 _atom_sites.fract_transf_matrix[1][1] 0.020244 _atom_sites.fract_transf_matrix[1][2] 0.011688 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023376 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007868 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 427 ? ? ? A . n A 1 2 ASN 2 428 ? ? ? A . n A 1 3 ALA 3 429 ? ? ? A . n A 1 4 GLU 4 430 ? ? ? A . n A 1 5 GLU 5 431 431 GLU GLU A . n A 1 6 LYS 6 432 432 LYS LYS A . n A 1 7 VAL 7 433 433 VAL VAL A . n A 1 8 VAL 8 434 434 VAL VAL A . n A 1 9 ALA 9 435 435 ALA ALA A . n A 1 10 GLU 10 436 436 GLU GLU A . n A 1 11 GLN 11 437 437 GLN GLN A . n A 1 12 GLN 12 438 438 GLN GLN A . n A 1 13 ALA 13 439 439 ALA ALA A . n A 1 14 ASP 14 440 440 ASP ASP A . n A 1 15 GLY 15 441 441 GLY GLY A . n A 1 16 THR 16 442 442 THR THR A . n A 1 17 TRP 17 443 443 TRP TRP A . n A 1 18 LEU 18 444 444 LEU LEU A . n A 1 19 MSE 19 445 445 MSE MSE A . n A 1 20 ASP 20 446 446 ASP ASP A . n A 1 21 GLY 21 447 447 GLY GLY A . n A 1 22 TRP 22 448 448 TRP TRP A . n A 1 23 ILE 23 449 449 ILE ILE A . n A 1 24 SER 24 450 450 SER SER A . n A 1 25 ILE 25 451 451 ILE ILE A . n A 1 26 ARG 26 452 452 ARG ARG A . n A 1 27 LYS 27 453 453 LYS LYS A . n A 1 28 ALA 28 454 454 ALA ALA A . n A 1 29 SER 29 455 455 SER SER A . n A 1 30 ASN 30 456 456 ASN ASN A . n A 1 31 LEU 31 457 457 LEU LEU A . n A 1 32 LEU 32 458 458 LEU LEU A . n A 1 33 GLU 33 459 459 GLU GLU A . n A 1 34 HIS 34 460 460 HIS HIS A . n A 1 35 ASP 35 461 461 ASP ASP A . n A 1 36 LEU 36 462 462 LEU LEU A . n A 1 37 VAL 37 463 463 VAL VAL A . n A 1 38 ASP 38 464 464 ASP ASP A . n A 1 39 GLU 39 465 465 GLU GLU A . n A 1 40 ALA 40 466 466 ALA ALA A . n A 1 41 GLU 41 467 467 GLU GLU A . n A 1 42 ARG 42 468 468 ARG ARG A . n A 1 43 TYR 43 469 469 TYR TYR A . n A 1 44 SER 44 470 470 SER SER A . n A 1 45 THR 45 471 471 THR THR A . n A 1 46 LEU 46 472 472 LEU LEU A . n A 1 47 GLY 47 473 473 GLY GLY A . n A 1 48 GLY 48 474 474 GLY GLY A . n A 1 49 TYR 49 475 475 TYR TYR A . n A 1 50 LEU 50 476 476 LEU LEU A . n A 1 51 LEU 51 477 477 LEU LEU A . n A 1 52 TRP 52 478 478 TRP TRP A . n A 1 53 GLN 53 479 479 GLN GLN A . n A 1 54 PHE 54 480 480 PHE PHE A . n A 1 55 GLY 55 481 481 GLY GLY A . n A 1 56 TYR 56 482 482 TYR TYR A . n A 1 57 ILE 57 483 483 ILE ILE A . n A 1 58 PRO 58 484 484 PRO PRO A . n A 1 59 ALA 59 485 485 ALA ALA A . n A 1 60 ALA 60 486 486 ALA ALA A . n A 1 61 GLY 61 487 487 GLY GLY A . n A 1 62 GLU 62 488 488 GLU GLU A . n A 1 63 GLN 63 489 489 GLN GLN A . n A 1 64 ILE 64 490 490 ILE ILE A . n A 1 65 THR 65 491 491 THR THR A . n A 1 66 VAL 66 492 492 VAL VAL A . n A 1 67 ASP 67 493 493 ASP ASP A . n A 1 68 GLY 68 494 494 GLY GLY A . n A 1 69 LEU 69 495 495 LEU LEU A . n A 1 70 ILE 70 496 496 ILE ILE A . n A 1 71 PHE 71 497 497 PHE PHE A . n A 1 72 GLU 72 498 498 GLU GLU A . n A 1 73 ILE 73 499 499 ILE ILE A . n A 1 74 VAL 74 500 500 VAL VAL A . n A 1 75 SER 75 501 501 SER SER A . n A 1 76 VAL 76 502 502 VAL VAL A . n A 1 77 ASN 77 503 503 ASN ASN A . n A 1 78 LYS 78 504 504 LYS LYS A . n A 1 79 HIS 79 505 505 HIS HIS A . n A 1 80 ASN 80 506 506 ASN ASN A . n A 1 81 ILE 81 507 507 ILE ILE A . n A 1 82 GLY 82 508 508 GLY GLY A . n A 1 83 LYS 83 509 509 LYS LYS A . n A 1 84 VAL 84 510 510 VAL VAL A . n A 1 85 ARG 85 511 511 ARG ARG A . n A 1 86 VAL 86 512 512 VAL VAL A . n A 1 87 HIS 87 513 513 HIS HIS A . n A 1 88 ARG 88 514 514 ARG ARG A . n A 1 89 THR 89 515 515 THR THR A . n A 1 90 GLN 90 516 ? ? ? A . n B 1 1 SER 1 427 ? ? ? B . n B 1 2 ASN 2 428 ? ? ? B . n B 1 3 ALA 3 429 ? ? ? B . n B 1 4 GLU 4 430 ? ? ? B . n B 1 5 GLU 5 431 431 GLU GLU B . n B 1 6 LYS 6 432 432 LYS LYS B . n B 1 7 VAL 7 433 433 VAL VAL B . n B 1 8 VAL 8 434 434 VAL VAL B . n B 1 9 ALA 9 435 435 ALA ALA B . n B 1 10 GLU 10 436 436 GLU GLU B . n B 1 11 GLN 11 437 437 GLN GLN B . n B 1 12 GLN 12 438 438 GLN GLN B . n B 1 13 ALA 13 439 439 ALA ALA B . n B 1 14 ASP 14 440 440 ASP ASP B . n B 1 15 GLY 15 441 441 GLY GLY B . n B 1 16 THR 16 442 442 THR THR B . n B 1 17 TRP 17 443 443 TRP TRP B . n B 1 18 LEU 18 444 444 LEU LEU B . n B 1 19 MSE 19 445 445 MSE MSE B . n B 1 20 ASP 20 446 446 ASP ASP B . n B 1 21 GLY 21 447 447 GLY GLY B . n B 1 22 TRP 22 448 448 TRP TRP B . n B 1 23 ILE 23 449 449 ILE ILE B . n B 1 24 SER 24 450 450 SER SER B . n B 1 25 ILE 25 451 451 ILE ILE B . n B 1 26 ARG 26 452 452 ARG ARG B . n B 1 27 LYS 27 453 453 LYS LYS B . n B 1 28 ALA 28 454 454 ALA ALA B . n B 1 29 SER 29 455 455 SER SER B . n B 1 30 ASN 30 456 456 ASN ASN B . n B 1 31 LEU 31 457 457 LEU LEU B . n B 1 32 LEU 32 458 458 LEU LEU B . n B 1 33 GLU 33 459 459 GLU GLU B . n B 1 34 HIS 34 460 460 HIS HIS B . n B 1 35 ASP 35 461 461 ASP ASP B . n B 1 36 LEU 36 462 462 LEU LEU B . n B 1 37 VAL 37 463 463 VAL VAL B . n B 1 38 ASP 38 464 ? ? ? B . n B 1 39 GLU 39 465 ? ? ? B . n B 1 40 ALA 40 466 466 ALA ALA B . n B 1 41 GLU 41 467 467 GLU GLU B . n B 1 42 ARG 42 468 468 ARG ARG B . n B 1 43 TYR 43 469 469 TYR TYR B . n B 1 44 SER 44 470 470 SER SER B . n B 1 45 THR 45 471 471 THR THR B . n B 1 46 LEU 46 472 472 LEU LEU B . n B 1 47 GLY 47 473 473 GLY GLY B . n B 1 48 GLY 48 474 474 GLY GLY B . n B 1 49 TYR 49 475 475 TYR TYR B . n B 1 50 LEU 50 476 476 LEU LEU B . n B 1 51 LEU 51 477 477 LEU LEU B . n B 1 52 TRP 52 478 478 TRP TRP B . n B 1 53 GLN 53 479 479 GLN GLN B . n B 1 54 PHE 54 480 480 PHE PHE B . n B 1 55 GLY 55 481 481 GLY GLY B . n B 1 56 TYR 56 482 482 TYR TYR B . n B 1 57 ILE 57 483 483 ILE ILE B . n B 1 58 PRO 58 484 484 PRO PRO B . n B 1 59 ALA 59 485 485 ALA ALA B . n B 1 60 ALA 60 486 486 ALA ALA B . n B 1 61 GLY 61 487 487 GLY GLY B . n B 1 62 GLU 62 488 488 GLU GLU B . n B 1 63 GLN 63 489 489 GLN GLN B . n B 1 64 ILE 64 490 490 ILE ILE B . n B 1 65 THR 65 491 491 THR THR B . n B 1 66 VAL 66 492 492 VAL VAL B . n B 1 67 ASP 67 493 493 ASP ASP B . n B 1 68 GLY 68 494 494 GLY GLY B . n B 1 69 LEU 69 495 495 LEU LEU B . n B 1 70 ILE 70 496 496 ILE ILE B . n B 1 71 PHE 71 497 497 PHE PHE B . n B 1 72 GLU 72 498 498 GLU GLU B . n B 1 73 ILE 73 499 499 ILE ILE B . n B 1 74 VAL 74 500 500 VAL VAL B . n B 1 75 SER 75 501 501 SER SER B . n B 1 76 VAL 76 502 502 VAL VAL B . n B 1 77 ASN 77 503 503 ASN ASN B . n B 1 78 LYS 78 504 504 LYS LYS B . n B 1 79 HIS 79 505 505 HIS HIS B . n B 1 80 ASN 80 506 506 ASN ASN B . n B 1 81 ILE 81 507 507 ILE ILE B . n B 1 82 GLY 82 508 508 GLY GLY B . n B 1 83 LYS 83 509 509 LYS LYS B . n B 1 84 VAL 84 510 510 VAL VAL B . n B 1 85 ARG 85 511 511 ARG ARG B . n B 1 86 VAL 86 512 512 VAL VAL B . n B 1 87 HIS 87 513 513 HIS HIS B . n B 1 88 ARG 88 514 514 ARG ARG B . n B 1 89 THR 89 515 515 THR THR B . n B 1 90 GLN 90 516 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACY 1 201 1 ACY ACY A . D 3 HOH 1 3 3 HOH HOH A . D 3 HOH 2 4 4 HOH HOH A . D 3 HOH 3 5 5 HOH HOH A . D 3 HOH 4 6 6 HOH HOH A . D 3 HOH 5 7 7 HOH HOH A . D 3 HOH 6 8 8 HOH HOH A . D 3 HOH 7 9 9 HOH HOH A . D 3 HOH 8 10 10 HOH HOH A . D 3 HOH 9 11 11 HOH HOH A . D 3 HOH 10 13 13 HOH HOH A . D 3 HOH 11 14 14 HOH HOH A . D 3 HOH 12 15 15 HOH HOH A . D 3 HOH 13 18 18 HOH HOH A . D 3 HOH 14 19 19 HOH HOH A . D 3 HOH 15 20 20 HOH HOH A . D 3 HOH 16 22 22 HOH HOH A . D 3 HOH 17 24 24 HOH HOH A . D 3 HOH 18 25 25 HOH HOH A . D 3 HOH 19 26 26 HOH HOH A . D 3 HOH 20 28 28 HOH HOH A . D 3 HOH 21 32 32 HOH HOH A . D 3 HOH 22 35 35 HOH HOH A . D 3 HOH 23 38 38 HOH HOH A . D 3 HOH 24 39 39 HOH HOH A . D 3 HOH 25 40 40 HOH HOH A . D 3 HOH 26 43 43 HOH HOH A . D 3 HOH 27 48 48 HOH HOH A . D 3 HOH 28 53 53 HOH HOH A . D 3 HOH 29 54 54 HOH HOH A . D 3 HOH 30 55 55 HOH HOH A . D 3 HOH 31 56 56 HOH HOH A . D 3 HOH 32 64 64 HOH HOH A . D 3 HOH 33 67 67 HOH HOH A . D 3 HOH 34 68 68 HOH HOH A . D 3 HOH 35 69 69 HOH HOH A . D 3 HOH 36 72 72 HOH HOH A . D 3 HOH 37 73 73 HOH HOH A . D 3 HOH 38 75 75 HOH HOH A . D 3 HOH 39 76 76 HOH HOH A . D 3 HOH 40 77 77 HOH HOH A . D 3 HOH 41 78 78 HOH HOH A . D 3 HOH 42 81 81 HOH HOH A . D 3 HOH 43 82 82 HOH HOH A . D 3 HOH 44 84 84 HOH HOH A . D 3 HOH 45 86 86 HOH HOH A . D 3 HOH 46 89 89 HOH HOH A . D 3 HOH 47 90 90 HOH HOH A . D 3 HOH 48 91 91 HOH HOH A . D 3 HOH 49 94 94 HOH HOH A . D 3 HOH 50 95 95 HOH HOH A . D 3 HOH 51 96 96 HOH HOH A . D 3 HOH 52 100 100 HOH HOH A . D 3 HOH 53 101 101 HOH HOH A . D 3 HOH 54 102 102 HOH HOH A . D 3 HOH 55 106 106 HOH HOH A . D 3 HOH 56 107 107 HOH HOH A . D 3 HOH 57 108 108 HOH HOH A . D 3 HOH 58 119 119 HOH HOH A . D 3 HOH 59 120 120 HOH HOH A . D 3 HOH 60 122 122 HOH HOH A . D 3 HOH 61 127 127 HOH HOH A . D 3 HOH 62 128 128 HOH HOH A . D 3 HOH 63 129 129 HOH HOH A . D 3 HOH 64 137 137 HOH HOH A . D 3 HOH 65 139 139 HOH HOH A . D 3 HOH 66 140 140 HOH HOH A . D 3 HOH 67 141 141 HOH HOH A . D 3 HOH 68 145 145 HOH HOH A . D 3 HOH 69 148 148 HOH HOH A . D 3 HOH 70 149 149 HOH HOH A . D 3 HOH 71 151 151 HOH HOH A . D 3 HOH 72 153 153 HOH HOH A . D 3 HOH 73 154 154 HOH HOH A . D 3 HOH 74 157 157 HOH HOH A . D 3 HOH 75 158 158 HOH HOH A . D 3 HOH 76 159 159 HOH HOH A . D 3 HOH 77 160 160 HOH HOH A . D 3 HOH 78 166 166 HOH HOH A . D 3 HOH 79 167 167 HOH HOH A . D 3 HOH 80 168 168 HOH HOH A . D 3 HOH 81 170 170 HOH HOH A . D 3 HOH 82 171 171 HOH HOH A . D 3 HOH 83 172 172 HOH HOH A . E 3 HOH 1 1 1 HOH HOH B . E 3 HOH 2 2 2 HOH HOH B . E 3 HOH 3 12 12 HOH HOH B . E 3 HOH 4 16 16 HOH HOH B . E 3 HOH 5 17 17 HOH HOH B . E 3 HOH 6 21 21 HOH HOH B . E 3 HOH 7 23 23 HOH HOH B . E 3 HOH 8 27 27 HOH HOH B . E 3 HOH 9 29 29 HOH HOH B . E 3 HOH 10 30 30 HOH HOH B . E 3 HOH 11 31 31 HOH HOH B . E 3 HOH 12 33 33 HOH HOH B . E 3 HOH 13 34 34 HOH HOH B . E 3 HOH 14 36 36 HOH HOH B . E 3 HOH 15 37 37 HOH HOH B . E 3 HOH 16 41 41 HOH HOH B . E 3 HOH 17 42 42 HOH HOH B . E 3 HOH 18 44 44 HOH HOH B . E 3 HOH 19 45 45 HOH HOH B . E 3 HOH 20 46 46 HOH HOH B . E 3 HOH 21 47 47 HOH HOH B . E 3 HOH 22 49 49 HOH HOH B . E 3 HOH 23 50 50 HOH HOH B . E 3 HOH 24 51 51 HOH HOH B . E 3 HOH 25 52 52 HOH HOH B . E 3 HOH 26 57 57 HOH HOH B . E 3 HOH 27 58 58 HOH HOH B . E 3 HOH 28 59 59 HOH HOH B . E 3 HOH 29 60 60 HOH HOH B . E 3 HOH 30 61 61 HOH HOH B . E 3 HOH 31 62 62 HOH HOH B . E 3 HOH 32 63 63 HOH HOH B . E 3 HOH 33 65 65 HOH HOH B . E 3 HOH 34 66 66 HOH HOH B . E 3 HOH 35 70 70 HOH HOH B . E 3 HOH 36 71 71 HOH HOH B . E 3 HOH 37 74 74 HOH HOH B . E 3 HOH 38 79 79 HOH HOH B . E 3 HOH 39 80 80 HOH HOH B . E 3 HOH 40 83 83 HOH HOH B . E 3 HOH 41 85 85 HOH HOH B . E 3 HOH 42 87 87 HOH HOH B . E 3 HOH 43 88 88 HOH HOH B . E 3 HOH 44 92 92 HOH HOH B . E 3 HOH 45 93 93 HOH HOH B . E 3 HOH 46 97 97 HOH HOH B . E 3 HOH 47 98 98 HOH HOH B . E 3 HOH 48 99 99 HOH HOH B . E 3 HOH 49 103 103 HOH HOH B . E 3 HOH 50 104 104 HOH HOH B . E 3 HOH 51 105 105 HOH HOH B . E 3 HOH 52 109 109 HOH HOH B . E 3 HOH 53 110 110 HOH HOH B . E 3 HOH 54 111 111 HOH HOH B . E 3 HOH 55 112 112 HOH HOH B . E 3 HOH 56 113 113 HOH HOH B . E 3 HOH 57 114 114 HOH HOH B . E 3 HOH 58 115 115 HOH HOH B . E 3 HOH 59 116 116 HOH HOH B . E 3 HOH 60 117 117 HOH HOH B . E 3 HOH 61 118 118 HOH HOH B . E 3 HOH 62 121 121 HOH HOH B . E 3 HOH 63 123 123 HOH HOH B . E 3 HOH 64 124 124 HOH HOH B . E 3 HOH 65 125 125 HOH HOH B . E 3 HOH 66 126 126 HOH HOH B . E 3 HOH 67 130 130 HOH HOH B . E 3 HOH 68 131 131 HOH HOH B . E 3 HOH 69 132 132 HOH HOH B . E 3 HOH 70 133 133 HOH HOH B . E 3 HOH 71 134 134 HOH HOH B . E 3 HOH 72 135 135 HOH HOH B . E 3 HOH 73 136 136 HOH HOH B . E 3 HOH 74 138 138 HOH HOH B . E 3 HOH 75 142 142 HOH HOH B . E 3 HOH 76 143 143 HOH HOH B . E 3 HOH 77 144 144 HOH HOH B . E 3 HOH 78 146 146 HOH HOH B . E 3 HOH 79 147 147 HOH HOH B . E 3 HOH 80 150 150 HOH HOH B . E 3 HOH 81 152 152 HOH HOH B . E 3 HOH 82 155 155 HOH HOH B . E 3 HOH 83 156 156 HOH HOH B . E 3 HOH 84 161 161 HOH HOH B . E 3 HOH 85 162 162 HOH HOH B . E 3 HOH 86 163 163 HOH HOH B . E 3 HOH 87 164 164 HOH HOH B . E 3 HOH 88 165 165 HOH HOH B . E 3 HOH 89 169 169 HOH HOH B . E 3 HOH 90 173 173 HOH HOH B . E 3 HOH 91 174 174 HOH HOH B . E 3 HOH 92 175 175 HOH HOH B . E 3 HOH 93 176 176 HOH HOH B . E 3 HOH 94 177 177 HOH HOH B . E 3 HOH 95 178 178 HOH HOH B . E 3 HOH 96 179 179 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 19 A MSE 445 ? MET SELENOMETHIONINE 2 B MSE 19 B MSE 445 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 32 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-03 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -17.5380 6.3010 -7.5790 -0.0725 -0.1744 -0.1978 0.0996 -0.0119 0.0084 1.7120 5.0734 2.5898 -1.4739 0.2908 -0.0309 -0.4007 -0.2574 0.0265 0.5163 0.3028 -0.1701 -0.3171 -0.1651 0.0979 'X-RAY DIFFRACTION' 2 ? refined -4.0580 -14.1680 -13.8070 -0.1293 -0.1326 -0.1368 0.1063 -0.0152 0.0134 1.6427 2.8132 5.3030 -2.0205 0.4625 -1.1802 -0.2130 -0.0647 0.2123 0.2004 0.0936 -0.0981 0.4134 0.7060 0.1194 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 431 A 5 A 515 A 89 ? 'X-RAY DIFFRACTION' ? 2 2 B 431 B 5 B 515 B 89 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data collection' . ? 3 HKL-3000 'data reduction' . ? 4 HKL-3000 'data scaling' . ? 5 HKL-3000 phasing . ? 6 SHELXCD phasing . ? 7 SHELXD phasing . ? 8 SHELXE 'model building' . ? 9 MLPHARE phasing . ? 10 SOLVE phasing . ? 11 RESOLVE phasing . ? 12 PHENIX phasing . ? 13 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. THE BIOLOGICAL UNIT ASSEMBLY SHOWN IN REMARK 350 IS PREDICTED BY THE ANALYSIS OF PROTEIN INTERFACES BASED ON THIS CRYSTAL STRUCTURE. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 47 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 111 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.82 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 503 ? ? -120.94 -169.32 2 1 ASN A 503 ? ? -120.94 -169.99 3 1 ASN B 503 ? ? -118.15 -168.46 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 427 ? A SER 1 2 1 Y 1 A ASN 428 ? A ASN 2 3 1 Y 1 A ALA 429 ? A ALA 3 4 1 Y 1 A GLU 430 ? A GLU 4 5 1 Y 1 A GLN 516 ? A GLN 90 6 1 Y 1 B SER 427 ? B SER 1 7 1 Y 1 B ASN 428 ? B ASN 2 8 1 Y 1 B ALA 429 ? B ALA 3 9 1 Y 1 B GLU 430 ? B GLU 4 10 1 Y 1 B ASP 464 ? B ASP 38 11 1 Y 1 B GLU 465 ? B GLU 39 12 1 Y 1 B GLN 516 ? B GLN 90 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETIC ACID' ACY 3 water HOH #