HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-MAR-07 2P17 TITLE CRYSTAL STRUCTURE OF GK1651 FROM GEOBACILLUS KAUSTOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIRIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS KAUSTOPHILUS; SOURCE 3 ORGANISM_TAXID: 235909; SOURCE 4 STRAIN: HTA426; SOURCE 5 GENE: GK1651; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL-X; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS GK1651, GEOBACILLUS KAUSTOPHILUS, STRUCTURAL GENOMICS, SOUTHEAST KEYWDS 2 COLLABORATORY FOR STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 SECSG, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PSI, KEYWDS 4 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHU,J.T.SWINDELL II,L.CHEN,A.EBIHARA,A.SHINKAI,S.KURAMITSU, AUTHOR 2 S.YOKOYAMA,Z.-Q.FU,J.P.ROSE,B.C.WANG,SOUTHEAST COLLABORATORY FOR AUTHOR 3 STRUCTURAL GENOMICS (SECSG),RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 4 INITIATIVE (RSGI) REVDAT 6 20-NOV-24 2P17 1 REMARK SEQADV LINK REVDAT 5 24-JAN-18 2P17 1 AUTHOR JRNL REVDAT 4 13-SEP-17 2P17 1 REMARK REVDAT 3 13-JUL-11 2P17 1 VERSN REVDAT 2 24-FEB-09 2P17 1 VERSN REVDAT 1 01-MAY-07 2P17 0 JRNL AUTH J.ZHU,J.T.SWINDELL II,L.CHEN,A.EBIHARA,A.SHINKAI, JRNL AUTH 2 S.KURAMITSU,S.YOKOYAMA,Z.-Q.FU,J.P.ROSE,B.C.WANG JRNL TITL CRYSTAL STRUCTURE OF GK1651 FROM GEOBACILLUS KAUSTOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33392 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2370 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1951 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.190 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1977 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2680 ; 1.240 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 6.483 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;37.205 ;23.708 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 327 ;11.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.044 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 295 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1516 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 811 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1330 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 180 ; 0.098 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.078 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.093 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1266 ; 0.673 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1999 ; 1.103 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 796 ; 1.925 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 681 ; 2.909 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : ROSENBAUM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35234 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 22.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SGXPRO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROBATCH USING 1.0 MICROLITER DROPS REMARK 280 CONTAINING EQUAL VOLUMES OF PROTEIN CONCENTRATE (5.09 MG/ML) AND REMARK 280 SOLUTION CONTAING 30% W/V PEG 4000, 0.1 M SODIUM ACETATE, 0.2 M REMARK 280 AMMONIUM ACETATE PH 4.6, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.78550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.84250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.91150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.84250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.78550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.91150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 250 REMARK 465 ALA A 251 REMARK 465 TYR A 252 REMARK 465 GLY A 253 REMARK 465 PRO A 254 REMARK 465 PHE A 255 REMARK 465 VAL A 256 REMARK 465 MSE A 257 REMARK 465 ASN A 258 REMARK 465 THR A 259 REMARK 465 PRO A 260 REMARK 465 GLU A 261 REMARK 465 GLN A 262 REMARK 465 ILE A 263 REMARK 465 ARG A 264 REMARK 465 GLU A 265 REMARK 465 ALA A 266 REMARK 465 ILE A 267 REMARK 465 ARG A 268 REMARK 465 ASP A 269 REMARK 465 TYR A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLY A 273 REMARK 465 ARG A 274 REMARK 465 PHE A 275 REMARK 465 GLY A 276 REMARK 465 ARG A 277 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 58 CZ NH2 REMARK 480 ARG A 95 NH1 REMARK 480 LYS A 135 CD CE REMARK 480 LYS A 141 NZ REMARK 480 GLU A 143 OE2 REMARK 480 LYS A 158 CE NZ REMARK 480 LYS A 209 CE NZ REMARK 480 ARG A 232 NH2 REMARK 480 LYS A 234 CE NZ REMARK 480 PRO A 248 CG REMARK 480 VAL A 249 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 58 NE ARG A 58 CZ 0.127 REMARK 500 ARG A 58 CZ ARG A 58 NH1 0.655 REMARK 500 LYS A 135 CE LYS A 135 NZ 0.679 REMARK 500 GLU A 143 CD GLU A 143 OE2 0.128 REMARK 500 LYS A 234 CD LYS A 234 CE 0.249 REMARK 500 VAL A 249 CB VAL A 249 CG2 0.321 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 58 CD - NE - CZ ANGL. DEV. = -23.2 DEGREES REMARK 500 ARG A 58 NE - CZ - NH1 ANGL. DEV. = 19.9 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -21.9 DEGREES REMARK 500 ARG A 95 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 95 NE - CZ - NH1 ANGL. DEV. = -7.3 DEGREES REMARK 500 LYS A 141 CD - CE - NZ ANGL. DEV. = -18.5 DEGREES REMARK 500 ARG A 232 NE - CZ - NH2 ANGL. DEV. = -11.1 DEGREES REMARK 500 LYS A 234 CD - CE - NZ ANGL. DEV. = 17.4 DEGREES REMARK 500 VAL A 249 CG1 - CB - CG2 ANGL. DEV. = -33.9 DEGREES REMARK 500 VAL A 249 CA - CB - CG2 ANGL. DEV. = -20.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 37 122.86 -36.28 REMARK 500 ILE A 164 -74.33 -97.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 58 0.11 SIDE CHAIN REMARK 500 ARG A 232 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 278 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 NE2 REMARK 620 2 HIS A 99 NE2 102.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 278 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GKA001001651.1 RELATED DB: TARGETDB REMARK 900 RELATED ID: 1J1L RELATED DB: PDB REMARK 900 METAL BINDING PROTEIN DBREF 2P17 A 1 277 UNP Q5KZF0 Q5KZF0_GEOKA 1 277 SEQADV 2P17 MSE A 1 UNP Q5KZF0 MET 1 MODIFIED RESIDUE SEQADV 2P17 MSE A 15 UNP Q5KZF0 MET 15 MODIFIED RESIDUE SEQADV 2P17 MSE A 43 UNP Q5KZF0 MET 43 MODIFIED RESIDUE SEQADV 2P17 MSE A 91 UNP Q5KZF0 MET 91 MODIFIED RESIDUE SEQADV 2P17 MSE A 124 UNP Q5KZF0 MET 124 MODIFIED RESIDUE SEQADV 2P17 MSE A 137 UNP Q5KZF0 MET 137 MODIFIED RESIDUE SEQADV 2P17 MSE A 169 UNP Q5KZF0 MET 169 MODIFIED RESIDUE SEQADV 2P17 MSE A 172 UNP Q5KZF0 MET 172 MODIFIED RESIDUE SEQADV 2P17 MSE A 257 UNP Q5KZF0 MET 257 MODIFIED RESIDUE SEQRES 1 A 277 MSE ALA ILE GLN ARG ARG ILE ARG ARG VAL LYS THR VAL SEQRES 2 A 277 GLN MSE THR THR ASN SER PRO ILE HIS ARG SER GLY SER SEQRES 3 A 277 VAL LEU GLU PRO GLY ASN TRP GLN GLU TYR ASP PRO PHE SEQRES 4 A 277 LEU LEU LEU MSE GLU ASP ILE PHE GLU ARG GLY THR PHE SEQRES 5 A 277 ASP VAL HIS PRO HIS ARG GLY ILE GLU THR VAL THR TYR SEQRES 6 A 277 VAL ILE SER GLY GLU LEU GLU HIS PHE ASP SER LYS ALA SEQRES 7 A 277 GLY HIS SER THR LEU GLY PRO GLY ASP VAL GLN TRP MSE SEQRES 8 A 277 THR ALA GLY ARG GLY VAL VAL HIS LYS GLU ASP PRO ALA SEQRES 9 A 277 SER GLY SER THR VAL HIS SER LEU GLN LEU TRP VAL ASN SEQRES 10 A 277 LEU PRO SER ALA TYR LYS MSE THR GLU PRO ARG TYR GLN SEQRES 11 A 277 ASN LEU ARG SER LYS ASP MSE PRO VAL ARG LYS GLU GLU SEQRES 12 A 277 GLY ALA THR ILE ARG VAL PHE SER GLY SER SER LYS GLY SEQRES 13 A 277 VAL LYS ALA PRO THR LYS ASN ILE VAL PRO VAL THR MSE SEQRES 14 A 277 VAL GLU MSE ILE VAL GLU PRO GLY THR THR VAL VAL GLN SEQRES 15 A 277 ASP LEU PRO GLY HIS TYR ASN GLY PHE LEU TYR ILE LEU SEQRES 16 A 277 GLU GLY SER GLY VAL PHE GLY ALA ASP ASN ILE GLU GLY SEQRES 17 A 277 LYS ALA GLY GLN ALA LEU PHE PHE SER ARG HIS ASN ARG SEQRES 18 A 277 GLY GLU GLU THR GLU LEU ASN VAL THR ALA ARG GLU LYS SEQRES 19 A 277 LEU ARG LEU LEU LEU TYR ALA GLY GLU PRO VAL ASN GLU SEQRES 20 A 277 PRO VAL VAL ALA TYR GLY PRO PHE VAL MSE ASN THR PRO SEQRES 21 A 277 GLU GLN ILE ARG GLU ALA ILE ARG ASP TYR GLN GLU GLY SEQRES 22 A 277 ARG PHE GLY ARG MODRES 2P17 MSE A 1 MET SELENOMETHIONINE MODRES 2P17 MSE A 15 MET SELENOMETHIONINE MODRES 2P17 MSE A 43 MET SELENOMETHIONINE MODRES 2P17 MSE A 91 MET SELENOMETHIONINE MODRES 2P17 MSE A 124 MET SELENOMETHIONINE MODRES 2P17 MSE A 137 MET SELENOMETHIONINE MODRES 2P17 MSE A 169 MET SELENOMETHIONINE MODRES 2P17 MSE A 172 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 15 8 HET MSE A 43 8 HET MSE A 91 8 HET MSE A 124 8 HET MSE A 137 8 HET MSE A 169 8 HET MSE A 172 8 HET FE A 278 1 HETNAM MSE SELENOMETHIONINE HETNAM FE FE (III) ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 FE FE 3+ FORMUL 3 HOH *211(H2 O) HELIX 1 1 ASN A 32 ASP A 37 1 6 HELIX 2 2 PRO A 119 LYS A 123 5 5 HELIX 3 3 ARG A 133 MSE A 137 5 5 SHEET 1 A 3 ILE A 3 GLN A 4 0 SHEET 2 A 3 GLU A 224 ALA A 231 1 O GLU A 226 N ILE A 3 SHEET 3 A 3 THR A 179 PRO A 185 -1 N VAL A 180 O VAL A 229 SHEET 1 B 4 ILE A 3 GLN A 4 0 SHEET 2 B 4 GLU A 224 ALA A 231 1 O GLU A 226 N ILE A 3 SHEET 3 B 4 SER A 198 PHE A 201 -1 N VAL A 200 O THR A 230 SHEET 4 B 4 ILE A 206 LYS A 209 -1 O ILE A 206 N PHE A 201 SHEET 1 C 7 ILE A 7 THR A 12 0 SHEET 2 C 7 GLN A 212 PHE A 216 -1 O ALA A 213 N LYS A 11 SHEET 3 C 7 ASN A 189 GLU A 196 -1 N LEU A 192 O LEU A 214 SHEET 4 C 7 LEU A 235 GLY A 242 -1 O TYR A 240 N PHE A 191 SHEET 5 C 7 VAL A 167 VAL A 174 -1 N THR A 168 O ALA A 241 SHEET 6 C 7 ALA A 145 SER A 151 -1 N ARG A 148 O GLU A 171 SHEET 7 C 7 VAL A 139 GLU A 142 -1 N ARG A 140 O ILE A 147 SHEET 1 D 7 MSE A 15 SER A 19 0 SHEET 2 D 7 HIS A 22 LEU A 28 -1 O SER A 24 N THR A 16 SHEET 3 D 7 PHE A 39 PHE A 47 -1 O GLU A 44 N GLY A 25 SHEET 4 D 7 VAL A 109 ASN A 117 -1 O GLN A 113 N MSE A 43 SHEET 5 D 7 ILE A 60 SER A 68 -1 N VAL A 63 O LEU A 114 SHEET 6 D 7 VAL A 88 THR A 92 -1 O MSE A 91 N THR A 62 SHEET 7 D 7 ARG A 128 LEU A 132 -1 O ARG A 128 N THR A 92 SHEET 1 E 4 HIS A 55 HIS A 57 0 SHEET 2 E 4 VAL A 97 PRO A 103 -1 O VAL A 97 N HIS A 57 SHEET 3 E 4 LEU A 71 ASP A 75 -1 N GLU A 72 O ASP A 102 SHEET 4 E 4 GLY A 79 LEU A 83 -1 O LEU A 83 N LEU A 71 SHEET 1 F 2 SER A 153 SER A 154 0 SHEET 2 F 2 VAL A 157 LYS A 158 -1 O VAL A 157 N SER A 154 LINK C MSE A 1 N ALA A 2 1555 1555 1.34 LINK C GLN A 14 N MSE A 15 1555 1555 1.32 LINK C MSE A 15 N THR A 16 1555 1555 1.33 LINK C LEU A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N GLU A 44 1555 1555 1.33 LINK C TRP A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N THR A 92 1555 1555 1.33 LINK C LYS A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N THR A 125 1555 1555 1.33 LINK C ASP A 136 N MSE A 137 1555 1555 1.34 LINK C MSE A 137 N PRO A 138 1555 1555 1.35 LINK C THR A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N VAL A 170 1555 1555 1.33 LINK C GLU A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N ILE A 173 1555 1555 1.33 LINK NE2 HIS A 57 FE FE A 278 1555 1555 2.20 LINK NE2 HIS A 99 FE FE A 278 1555 1555 1.92 CISPEP 1 ASP A 37 PRO A 38 0 11.38 SITE 1 AC1 2 HIS A 57 HIS A 99 CRYST1 53.571 59.823 69.685 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018667 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014350 0.00000 HETATM 1 N MSE A 1 18.763 18.115 24.626 0.60 21.51 N HETATM 2 CA MSE A 1 19.524 16.907 24.201 1.00 21.12 C HETATM 3 C MSE A 1 20.904 17.293 23.657 1.00 20.05 C HETATM 4 O MSE A 1 21.858 17.345 24.432 1.00 20.05 O HETATM 5 CB MSE A 1 18.720 16.098 23.187 1.00 20.89 C HETATM 6 CG MSE A 1 19.244 14.714 22.881 1.00 22.57 C HETATM 7 SE MSE A 1 18.137 13.985 21.453 0.20 23.18 SE HETATM 8 CE MSE A 1 18.755 15.096 19.971 0.10 22.66 C