HEADER TRANSFERASE 05-MAR-07 2P1J TITLE CRYSTAL STRUCTURE OF A POLC-TYPE DNA POLYMERASE III EXONUCLEASE DOMAIN TITLE 2 FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III POLC-TYPE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXONUCLEASE DOMAIN; COMPND 5 SYNONYM: POLIII; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8, DSM 3109, JCM 10099; SOURCE 5 ATCC: 43589; SOURCE 6 GENE: POLC, TM_0576; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, EXONUCLEASE, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IZUKA,V.SRIDHAR,D.SMITH,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 2P1J 1 REMARK REVDAT 6 03-FEB-21 2P1J 1 AUTHOR JRNL SEQADV REVDAT 5 14-NOV-18 2P1J 1 AUTHOR REVDAT 4 18-OCT-17 2P1J 1 REMARK REVDAT 3 24-OCT-12 2P1J 1 AUTHOR VERSN REVDAT 2 24-FEB-09 2P1J 1 VERSN REVDAT 1 20-MAR-07 2P1J 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,M.IZUKA,V.SRIDHAR,D.SMITH, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A POLC-TYPE DNA POLYMERASE III JRNL TITL 2 EXONUCLEASE DOMAIN FROM THERMOTOGA MARITIMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 16961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2723 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.53000 REMARK 3 B22 (A**2) : 1.75000 REMARK 3 B33 (A**2) : -5.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.447 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.259 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2776 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3746 ; 1.958 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 9.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;40.847 ;23.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;23.851 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.669 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2054 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1322 ; 0.267 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1852 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 112 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 1.059 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2701 ; 1.808 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1197 ; 2.306 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1045 ; 3.621 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 24.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.81600 REMARK 200 R SYM FOR SHELL (I) : 0.81600 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL PH 8.6, 20% GLYCEROL, REMARK 280 14% PEG 10000, 150MM SODIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.53100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.53100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.85150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.46950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.85150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.46950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.53100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.85150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.46950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.53100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.85150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.46950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DOMAIN SWAPPED DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 6 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 345 REMARK 465 SER A 346 REMARK 465 LEU A 347 REMARK 465 SER A 348 REMARK 465 ASP A 349 REMARK 465 ASP A 350 REMARK 465 SER A 351 REMARK 465 THR A 352 REMARK 465 PHE A 353 REMARK 465 GLY A 354 REMARK 465 ASP A 355 REMARK 465 ALA A 356 REMARK 465 LYS A 521 REMARK 465 LYS A 522 REMARK 465 GLU A 523 REMARK 465 GLY A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 465 HIS A 528 REMARK 465 HIS A 529 REMARK 465 HIS A 530 REMARK 465 MET B 345 REMARK 465 SER B 346 REMARK 465 LEU B 347 REMARK 465 SER B 348 REMARK 465 ASP B 349 REMARK 465 ASP B 350 REMARK 465 SER B 351 REMARK 465 THR B 352 REMARK 465 PHE B 353 REMARK 465 GLY B 354 REMARK 465 ASP B 355 REMARK 465 ALA B 356 REMARK 465 HIS B 528 REMARK 465 HIS B 529 REMARK 465 HIS B 530 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU B 480 O SER B 482 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 361 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU A 453 CA - CB - CG ANGL. DEV. = 20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 372 -16.77 -148.87 REMARK 500 GLU A 435 116.96 128.05 REMARK 500 ASP A 436 -60.99 88.09 REMARK 500 LEU A 478 -45.87 -137.97 REMARK 500 LYS A 479 83.80 72.78 REMARK 500 PHE A 497 105.11 -59.54 REMARK 500 ARG A 498 35.97 71.14 REMARK 500 HIS A 500 52.46 -157.51 REMARK 500 VAL B 389 -33.07 -131.33 REMARK 500 ASP B 390 -164.25 -164.09 REMARK 500 ARG B 421 177.39 -54.28 REMARK 500 LEU B 434 -94.97 -94.10 REMARK 500 GLU B 435 -95.18 58.84 REMARK 500 LYS B 456 -76.07 -58.27 REMARK 500 LYS B 457 -38.63 -35.94 REMARK 500 LYS B 479 88.38 76.56 REMARK 500 SER B 484 158.07 -36.94 REMARK 500 PRO B 496 117.24 15.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 436 SER B 437 -147.82 REMARK 500 GLY B 495 PRO B 496 -115.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10330D RELATED DB: TARGETDB DBREF 2P1J A 347 522 UNP Q9ZHF6 DPO3_THEMA 347 522 DBREF 2P1J B 347 522 UNP Q9ZHF6 DPO3_THEMA 347 522 SEQADV 2P1J MET A 345 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J SER A 346 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J GLU A 523 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J GLY A 524 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS A 525 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS A 526 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS A 527 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS A 528 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS A 529 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS A 530 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J MET B 345 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J SER B 346 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J GLU B 523 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J GLY B 524 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS B 525 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS B 526 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS B 527 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS B 528 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS B 529 UNP Q9ZHF6 CLONING ARTIFACT SEQADV 2P1J HIS B 530 UNP Q9ZHF6 CLONING ARTIFACT SEQRES 1 A 186 MET SER LEU SER ASP ASP SER THR PHE GLY ASP ALA THR SEQRES 2 A 186 PHE VAL VAL LEU ASP PHE GLU THR THR GLY LEU ASP PRO SEQRES 3 A 186 GLN VAL ASP GLU ILE ILE GLU ILE GLY ALA VAL LYS ILE SEQRES 4 A 186 GLN GLY GLY GLN ILE VAL ASP GLU TYR HIS THR LEU ILE SEQRES 5 A 186 LYS PRO SER ARG GLU ILE SER ARG LYS SER SER GLU ILE SEQRES 6 A 186 THR GLY ILE THR GLN GLU MET LEU GLU ASN LYS ARG SER SEQRES 7 A 186 ILE GLU GLU VAL LEU PRO GLU PHE LEU GLY PHE LEU GLU SEQRES 8 A 186 ASP SER ILE ILE VAL ALA HIS ASN ALA ASN PHE ASP TYR SEQRES 9 A 186 ARG PHE LEU ARG LEU TRP ILE LYS LYS VAL MET GLY LEU SEQRES 10 A 186 ASP TRP GLU ARG PRO TYR ILE ASP THR LEU ALA LEU ALA SEQRES 11 A 186 LYS SER LEU LEU LYS LEU ARG SER TYR SER LEU ASP SER SEQRES 12 A 186 VAL VAL GLU LYS LEU GLY LEU GLY PRO PHE ARG HIS HIS SEQRES 13 A 186 ARG ALA LEU ASP ASP ALA ARG VAL THR ALA GLN VAL PHE SEQRES 14 A 186 LEU ARG PHE VAL GLU MET MET LYS LYS GLU GLY HIS HIS SEQRES 15 A 186 HIS HIS HIS HIS SEQRES 1 B 186 MET SER LEU SER ASP ASP SER THR PHE GLY ASP ALA THR SEQRES 2 B 186 PHE VAL VAL LEU ASP PHE GLU THR THR GLY LEU ASP PRO SEQRES 3 B 186 GLN VAL ASP GLU ILE ILE GLU ILE GLY ALA VAL LYS ILE SEQRES 4 B 186 GLN GLY GLY GLN ILE VAL ASP GLU TYR HIS THR LEU ILE SEQRES 5 B 186 LYS PRO SER ARG GLU ILE SER ARG LYS SER SER GLU ILE SEQRES 6 B 186 THR GLY ILE THR GLN GLU MET LEU GLU ASN LYS ARG SER SEQRES 7 B 186 ILE GLU GLU VAL LEU PRO GLU PHE LEU GLY PHE LEU GLU SEQRES 8 B 186 ASP SER ILE ILE VAL ALA HIS ASN ALA ASN PHE ASP TYR SEQRES 9 B 186 ARG PHE LEU ARG LEU TRP ILE LYS LYS VAL MET GLY LEU SEQRES 10 B 186 ASP TRP GLU ARG PRO TYR ILE ASP THR LEU ALA LEU ALA SEQRES 11 B 186 LYS SER LEU LEU LYS LEU ARG SER TYR SER LEU ASP SER SEQRES 12 B 186 VAL VAL GLU LYS LEU GLY LEU GLY PRO PHE ARG HIS HIS SEQRES 13 B 186 ARG ALA LEU ASP ASP ALA ARG VAL THR ALA GLN VAL PHE SEQRES 14 B 186 LEU ARG PHE VAL GLU MET MET LYS LYS GLU GLY HIS HIS SEQRES 15 B 186 HIS HIS HIS HIS FORMUL 3 HOH *86(H2 O) HELIX 1 1 SER A 403 GLY A 411 1 9 HELIX 2 2 THR A 413 GLU A 418 1 6 HELIX 3 3 SER A 422 LEU A 434 1 13 HELIX 4 4 ASN A 443 GLY A 460 1 18 HELIX 5 5 THR A 470 LEU A 478 1 9 HELIX 6 6 SER A 484 LEU A 492 1 9 HELIX 7 7 HIS A 500 VAL A 517 1 18 HELIX 8 8 SER B 403 GLY B 411 1 9 HELIX 9 9 THR B 413 GLU B 418 1 6 HELIX 10 10 SER B 422 LEU B 434 1 13 HELIX 11 11 ASN B 443 GLY B 460 1 18 HELIX 12 12 THR B 470 LEU B 478 1 9 HELIX 13 13 SER B 484 GLY B 493 1 10 HELIX 14 14 ARG B 501 MET B 520 1 20 SHEET 1 A 5 GLN A 387 LEU A 395 0 SHEET 2 A 5 ILE A 375 GLN A 384 -1 N LYS A 382 O ASP A 390 SHEET 3 A 5 PHE A 358 THR A 365 -1 N PHE A 358 O ILE A 383 SHEET 4 A 5 ILE A 438 ALA A 441 1 O VAL A 440 N LEU A 361 SHEET 5 A 5 TYR A 467 ASP A 469 1 O ILE A 468 N ILE A 439 SHEET 1 B 5 GLN B 387 LEU B 395 0 SHEET 2 B 5 ILE B 375 GLN B 384 -1 N ALA B 380 O TYR B 392 SHEET 3 B 5 PHE B 358 THR B 365 -1 N GLU B 364 O GLU B 377 SHEET 4 B 5 ILE B 438 ALA B 441 1 O VAL B 440 N LEU B 361 SHEET 5 B 5 TYR B 467 ASP B 469 1 O ILE B 468 N ILE B 439 CISPEP 1 GLY A 495 PRO A 496 0 2.20 CISPEP 2 MET A 519 MET A 520 0 9.60 CRYST1 55.703 124.939 143.062 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006990 0.00000