HEADER TRANSFERASE 06-MAR-07 2P1Z TITLE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLTRANSFERASE FROM CORYNEBACTERIUM TITLE 2 DIPHTHERIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.2.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 257309; SOURCE 4 STRAIN: NCTC 13129; SOURCE 5 ATCC: 700971; SOURCE 6 GENE: PYRE, DIP2097; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG KEYWDS CORYNEBACTERIUM DIPHTHERIAE, PHOSPHORIBOSYLTRANSFERASE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,H.LI,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2P1Z 1 VERSN REVDAT 2 24-FEB-09 2P1Z 1 VERSN REVDAT 1 03-APR-07 2P1Z 0 JRNL AUTH C.CHANG,H.LI,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PHOSPHORIBOSYLTRANSFERASE FROM JRNL TITL 2 CORYNEBACTERIUM DIPHTHERIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 10745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 655 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2410 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.49000 REMARK 3 B22 (A**2) : 2.97000 REMARK 3 B33 (A**2) : 1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.373 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.276 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.363 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2429 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3283 ; 1.389 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 6.142 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;37.149 ;23.298 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;19.595 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.017 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1756 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1219 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1617 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 133 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1639 ; 0.673 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2530 ; 1.036 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 873 ; 1.451 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 753 ; 2.315 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7547 43.6284 24.5127 REMARK 3 T TENSOR REMARK 3 T11: -0.1047 T22: -0.1403 REMARK 3 T33: 0.1405 T12: -0.0330 REMARK 3 T13: -0.0616 T23: -0.0835 REMARK 3 L TENSOR REMARK 3 L11: 6.6318 L22: 4.7989 REMARK 3 L33: 1.1517 L12: -1.1534 REMARK 3 L13: 0.3453 L23: 2.2232 REMARK 3 S TENSOR REMARK 3 S11: -0.2837 S12: -0.0499 S13: 0.9622 REMARK 3 S21: -0.2243 S22: -0.1064 S23: 0.9658 REMARK 3 S31: -0.0529 S32: -0.3960 S33: 0.3901 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8516 39.9619 27.2071 REMARK 3 T TENSOR REMARK 3 T11: -0.1119 T22: 0.0121 REMARK 3 T33: -0.0658 T12: -0.0574 REMARK 3 T13: 0.0129 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 6.0207 L22: 3.4065 REMARK 3 L33: 1.4754 L12: 0.9027 REMARK 3 L13: -0.3613 L23: -0.8745 REMARK 3 S TENSOR REMARK 3 S11: 0.0671 S12: -0.1301 S13: -0.0254 REMARK 3 S21: -0.0731 S22: -0.1153 S23: -0.1163 REMARK 3 S31: 0.1152 S32: 0.2792 S33: 0.0482 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8982 53.2717 29.3678 REMARK 3 T TENSOR REMARK 3 T11: -0.0774 T22: -0.1174 REMARK 3 T33: 0.1551 T12: -0.1167 REMARK 3 T13: 0.0016 T23: -0.1480 REMARK 3 L TENSOR REMARK 3 L11: 4.2906 L22: 3.3690 REMARK 3 L33: 2.4605 L12: -0.0509 REMARK 3 L13: 3.1997 L23: -0.5383 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.6992 S13: 1.2538 REMARK 3 S21: 0.0570 S22: -0.1766 S23: 0.4412 REMARK 3 S31: -0.4606 S32: 0.3409 S33: 0.1573 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): 26.2567 22.2529 19.2058 REMARK 3 T TENSOR REMARK 3 T11: -0.0905 T22: -0.0384 REMARK 3 T33: -0.1196 T12: 0.0285 REMARK 3 T13: 0.0593 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 13.7147 L22: 3.0508 REMARK 3 L33: 0.7863 L12: -1.3345 REMARK 3 L13: 2.4690 L23: 0.1138 REMARK 3 S TENSOR REMARK 3 S11: 0.3263 S12: 0.6718 S13: -0.4984 REMARK 3 S21: -0.3052 S22: -0.2870 S23: -0.3173 REMARK 3 S31: 0.1233 S32: -0.0073 S33: -0.0393 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3682 25.1626 32.1852 REMARK 3 T TENSOR REMARK 3 T11: -0.0970 T22: 0.0458 REMARK 3 T33: -0.0794 T12: -0.0471 REMARK 3 T13: 0.0085 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 5.6284 L22: 2.3073 REMARK 3 L33: 3.8884 L12: 1.0226 REMARK 3 L13: -0.4543 L23: -0.2105 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: -0.7520 S13: 0.2216 REMARK 3 S21: 0.1658 S22: -0.1268 S23: 0.1791 REMARK 3 S31: -0.3249 S32: -0.1144 S33: -0.0688 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 139 B 176 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7388 12.4070 27.5091 REMARK 3 T TENSOR REMARK 3 T11: -0.0269 T22: -0.1396 REMARK 3 T33: 0.0283 T12: 0.0298 REMARK 3 T13: -0.1309 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 4.1875 L22: 1.8741 REMARK 3 L33: 5.8532 L12: 2.2512 REMARK 3 L13: -2.4588 L23: -0.6986 REMARK 3 S TENSOR REMARK 3 S11: -0.1374 S12: -0.1294 S13: -0.7860 REMARK 3 S21: 0.3708 S22: -0.0476 S23: -0.3797 REMARK 3 S31: 0.6247 S32: 0.1656 S33: 0.1850 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB041866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929, 0.97943 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.52200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M TRIS- REMARK 280 HCL, 25 % PEG3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.21900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.85450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.21900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.85450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 VAL A 17 REMARK 465 HIS A 18 REMARK 465 GLY A 19 REMARK 465 LYS A 20 REMARK 465 VAL A 21 REMARK 465 THR A 22 REMARK 465 LEU A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 LYS A 27 REMARK 465 GLU A 28 REMARK 465 ALA A 29 REMARK 465 ASP A 30 REMARK 465 TYR A 31 REMARK 465 LYS A 96 REMARK 465 MSE A 100 REMARK 465 ARG A 150 REMARK 465 ALA A 177 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 VAL B 21 REMARK 465 THR B 22 REMARK 465 LEU B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 LYS B 97 REMARK 465 HIS B 98 REMARK 465 ALA B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 32 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 TYR B 31 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 176 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 15 O VAL B 33 1.84 REMARK 500 O LYS A 97 O HOH A 217 2.16 REMARK 500 NZ LYS B 93 O HOH B 211 2.16 REMARK 500 O GLY A 162 O HOH A 205 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 55 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -64.12 -94.00 REMARK 500 ASP A 34 77.88 49.87 REMARK 500 THR A 56 30.55 -141.32 REMARK 500 LEU A 69 -93.06 57.37 REMARK 500 ASP A 119 -70.80 -78.59 REMARK 500 THR A 122 -80.48 -95.10 REMARK 500 THR A 152 1.27 -159.38 REMARK 500 LEU A 171 -69.38 -95.68 REMARK 500 ASP B 30 5.61 55.50 REMARK 500 TYR B 31 114.97 179.24 REMARK 500 VAL B 33 -74.64 -84.93 REMARK 500 ASP B 34 75.45 71.62 REMARK 500 ASP B 60 40.76 -97.96 REMARK 500 LEU B 69 -90.16 84.07 REMARK 500 LYS B 93 54.46 -66.85 REMARK 500 GLN B 101 -131.95 -130.86 REMARK 500 ARG B 102 140.69 144.32 REMARK 500 THR B 122 -75.00 -106.91 REMARK 500 THR B 152 -157.76 -113.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 68 LEU A 69 -148.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 68 25.0 L L OUTSIDE RANGE REMARK 500 ASP B 30 23.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC82894 RELATED DB: TARGETDB DBREF 2P1Z A 1 177 UNP Q6NF12 Q6NF12_CORDI 1 177 DBREF 2P1Z B 1 177 UNP Q6NF12 Q6NF12_CORDI 1 177 SEQADV 2P1Z SER A -2 UNP Q6NF12 CLONING ARTIFACT SEQADV 2P1Z ASN A -1 UNP Q6NF12 CLONING ARTIFACT SEQADV 2P1Z ALA A 0 UNP Q6NF12 CLONING ARTIFACT SEQADV 2P1Z MSE A 1 UNP Q6NF12 MET 1 MODIFIED RESIDUE SEQADV 2P1Z MSE A 79 UNP Q6NF12 MET 79 MODIFIED RESIDUE SEQADV 2P1Z MSE A 100 UNP Q6NF12 MET 100 MODIFIED RESIDUE SEQADV 2P1Z SER B -2 UNP Q6NF12 CLONING ARTIFACT SEQADV 2P1Z ASN B -1 UNP Q6NF12 CLONING ARTIFACT SEQADV 2P1Z ALA B 0 UNP Q6NF12 CLONING ARTIFACT SEQADV 2P1Z MSE B 1 UNP Q6NF12 MET 1 MODIFIED RESIDUE SEQADV 2P1Z MSE B 79 UNP Q6NF12 MET 79 MODIFIED RESIDUE SEQADV 2P1Z MSE B 100 UNP Q6NF12 MET 100 MODIFIED RESIDUE SEQRES 1 A 180 SER ASN ALA MSE SER LYS LYS ALA GLU LEU ALA GLU LEU SEQRES 2 A 180 VAL LYS GLU LEU ALA VAL VAL HIS GLY LYS VAL THR LEU SEQRES 3 A 180 SER SER GLY LYS GLU ALA ASP TYR TYR VAL ASP LEU ARG SEQRES 4 A 180 ARG ALA THR LEU HIS ALA ARG ALA SER ARG LEU ILE GLY SEQRES 5 A 180 GLU LEU LEU ARG GLU LEU THR ALA ASP TRP ASP TYR VAL SEQRES 6 A 180 ALA VAL GLY GLY LEU THR LEU GLY ALA ASP PRO VAL ALA SEQRES 7 A 180 THR SER VAL MSE HIS ALA ASP GLY ARG GLU ILE HIS ALA SEQRES 8 A 180 PHE VAL VAL ARG LYS GLU ALA LYS LYS HIS GLY MSE GLN SEQRES 9 A 180 ARG ARG ILE GLU GLY PRO ASP VAL VAL GLY LYS LYS VAL SEQRES 10 A 180 LEU VAL VAL GLU ASP THR THR THR THR GLY ASN SER PRO SEQRES 11 A 180 LEU THR ALA VAL LYS ALA LEU ARG GLU ALA GLY ALA GLU SEQRES 12 A 180 VAL VAL GLY VAL ALA THR VAL VAL ASP ARG ALA THR GLY SEQRES 13 A 180 ALA ALA ASP VAL ILE ALA ALA GLU GLY LEU GLU TYR ARG SEQRES 14 A 180 TYR ILE LEU GLY LEU GLU ASP LEU GLY LEU ALA SEQRES 1 B 180 SER ASN ALA MSE SER LYS LYS ALA GLU LEU ALA GLU LEU SEQRES 2 B 180 VAL LYS GLU LEU ALA VAL VAL HIS GLY LYS VAL THR LEU SEQRES 3 B 180 SER SER GLY LYS GLU ALA ASP TYR TYR VAL ASP LEU ARG SEQRES 4 B 180 ARG ALA THR LEU HIS ALA ARG ALA SER ARG LEU ILE GLY SEQRES 5 B 180 GLU LEU LEU ARG GLU LEU THR ALA ASP TRP ASP TYR VAL SEQRES 6 B 180 ALA VAL GLY GLY LEU THR LEU GLY ALA ASP PRO VAL ALA SEQRES 7 B 180 THR SER VAL MSE HIS ALA ASP GLY ARG GLU ILE HIS ALA SEQRES 8 B 180 PHE VAL VAL ARG LYS GLU ALA LYS LYS HIS GLY MSE GLN SEQRES 9 B 180 ARG ARG ILE GLU GLY PRO ASP VAL VAL GLY LYS LYS VAL SEQRES 10 B 180 LEU VAL VAL GLU ASP THR THR THR THR GLY ASN SER PRO SEQRES 11 B 180 LEU THR ALA VAL LYS ALA LEU ARG GLU ALA GLY ALA GLU SEQRES 12 B 180 VAL VAL GLY VAL ALA THR VAL VAL ASP ARG ALA THR GLY SEQRES 13 B 180 ALA ALA ASP VAL ILE ALA ALA GLU GLY LEU GLU TYR ARG SEQRES 14 B 180 TYR ILE LEU GLY LEU GLU ASP LEU GLY LEU ALA MODRES 2P1Z MSE A 1 MET SELENOMETHIONINE MODRES 2P1Z MSE A 79 MET SELENOMETHIONINE MODRES 2P1Z MSE B 1 MET SELENOMETHIONINE MODRES 2P1Z MSE B 79 MET SELENOMETHIONINE MODRES 2P1Z MSE B 100 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 79 8 HET MSE B 1 8 HET MSE B 79 8 HET MSE B 100 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 HOH *103(H2 O) HELIX 1 1 SER A 2 ALA A 15 1 14 HELIX 2 2 LEU A 35 LEU A 40 1 6 HELIX 3 3 HIS A 41 LEU A 55 1 15 HELIX 4 4 GLY A 70 ALA A 81 1 12 HELIX 5 5 GLY A 124 GLY A 138 1 15 HELIX 6 6 GLY A 153 ALA A 160 1 8 HELIX 7 7 MSE B 1 VAL B 16 1 16 HELIX 8 8 LEU B 35 LEU B 40 1 6 HELIX 9 9 HIS B 41 THR B 56 1 16 HELIX 10 10 GLY B 70 ALA B 81 1 12 HELIX 11 11 GLY B 124 ALA B 137 1 14 HELIX 12 12 GLY B 153 ALA B 160 1 8 HELIX 13 13 GLY B 170 LEU B 174 5 5 SHEET 1 A 6 ILE A 104 GLU A 105 0 SHEET 2 A 6 HIS A 87 VAL A 91 -1 N VAL A 90 O GLU A 105 SHEET 3 A 6 ALA A 63 LEU A 67 1 N GLY A 66 O VAL A 91 SHEET 4 A 6 LYS A 113 THR A 120 1 O VAL A 117 N GLY A 65 SHEET 5 A 6 GLU A 140 VAL A 148 1 O GLU A 140 N VAL A 114 SHEET 6 A 6 TYR A 165 LEU A 169 1 O LEU A 169 N VAL A 147 SHEET 1 B 2 VAL B 17 HIS B 18 0 SHEET 2 B 2 TYR B 31 TYR B 32 -1 O TYR B 32 N VAL B 17 SHEET 1 C 5 HIS B 87 ALA B 88 0 SHEET 2 C 5 ALA B 63 GLY B 65 1 N VAL B 64 O HIS B 87 SHEET 3 C 5 LYS B 113 THR B 121 1 O LEU B 115 N ALA B 63 SHEET 4 C 5 GLU B 140 ASP B 149 1 O VAL B 142 N VAL B 114 SHEET 5 C 5 TYR B 165 LEU B 169 1 O LEU B 169 N VAL B 147 SHEET 1 D 2 VAL B 90 VAL B 91 0 SHEET 2 D 2 ILE B 104 GLU B 105 -1 O GLU B 105 N VAL B 90 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C VAL A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N HIS A 80 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C VAL B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N HIS B 80 1555 1555 1.34 LINK C GLY B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N GLN B 101 1555 1555 1.33 CRYST1 72.438 103.709 39.417 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013805 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025370 0.00000 HETATM 1 N MSE A 1 9.225 51.491 15.472 1.00 86.62 N HETATM 2 CA MSE A 1 8.437 52.753 15.592 1.00 87.34 C HETATM 3 C MSE A 1 6.979 52.496 15.953 1.00 85.85 C HETATM 4 O MSE A 1 6.355 53.309 16.641 1.00 85.97 O HETATM 5 CB MSE A 1 8.474 53.554 14.289 1.00 87.25 C HETATM 6 CG MSE A 1 9.794 54.236 13.976 1.00 88.47 C HETATM 7 SE MSE A 1 9.518 55.849 12.897 1.00 91.16 SE HETATM 8 CE MSE A 1 8.332 55.160 11.489 1.00 90.88 C