HEADER CELL ADHESION 06-MAR-07 2P26 TITLE STRUCTURE OF THE PHE2 AND PHE3 FRAGMENTS OF THE INTEGRIN BETA2 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHE2 AND PHE3; COMPND 5 SYNONYM: CELL SURFACE ADHESION GLYCOPROTEINS LFA- 1/CR3/P150,95 COMPND 6 SUBUNIT BETA, COMPLEMENT RECEPTOR C3 SUBUNIT BETA, CD18 ANTIGEN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293_GNTI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PIRES2-EGFP KEYWDS INTEGRIN BETA2 SUBUNIT, HYBRID DOMAIN, PSI DOMAIN, I-EGF DOMAINS, KEYWDS 2 CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR M.SHI,S.Y.FOO,S.M.TAN,E.P.MITCHELL,S.K.A.LAW,J.LESCAR REVDAT 7 25-OCT-23 2P26 1 HETSYN REVDAT 6 29-JUL-20 2P26 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 16-AUG-17 2P26 1 SOURCE REMARK REVDAT 4 13-JUL-11 2P26 1 VERSN REVDAT 3 24-FEB-09 2P26 1 VERSN REVDAT 2 17-JUN-08 2P26 1 JRNL REVDAT 1 14-AUG-07 2P26 0 JRNL AUTH M.SHI,S.Y.FOO,S.M.TAN,E.P.MITCHELL,S.K.A.LAW,J.LESCAR JRNL TITL A STRUCTURAL HYPOTHESIS FOR THE TRANSITION BETWEEN BENT AND JRNL TITL 2 EXTENDED CONFORMATIONS OF THE LEUKOCYTE BETA2 INTEGRINS JRNL REF J.BIOL.CHEM. V. 282 30198 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17673459 JRNL DOI 10.1074/JBC.M701670200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 21815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 817 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.4040 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.5920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2281 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3095 ; 1.169 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 5.817 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;35.744 ;24.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;15.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;12.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1740 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 957 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1516 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 157 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1448 ; 0.378 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2275 ; 0.649 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 907 ; 1.101 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 820 ; 1.794 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8980 -7.8590 -32.0500 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0056 REMARK 3 T33: 0.0181 T12: 0.0117 REMARK 3 T13: -0.0035 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.0658 L22: 2.2788 REMARK 3 L33: 1.7243 L12: 0.1150 REMARK 3 L13: 0.7279 L23: -0.2921 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.0400 S13: -0.0597 REMARK 3 S21: 0.0526 S22: -0.0008 S23: 0.0902 REMARK 3 S31: -0.0941 S32: -0.1010 S33: -0.0240 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0320 -18.8270 -11.8320 REMARK 3 T TENSOR REMARK 3 T11: 0.3017 T22: 0.3394 REMARK 3 T33: 0.4643 T12: 0.0437 REMARK 3 T13: -0.0759 T23: 0.1047 REMARK 3 L TENSOR REMARK 3 L11: 7.8094 L22: 2.0915 REMARK 3 L33: 9.0043 L12: -1.5293 REMARK 3 L13: 2.8790 L23: -2.5158 REMARK 3 S TENSOR REMARK 3 S11: 0.5910 S12: -0.0352 S13: -1.8147 REMARK 3 S21: 0.0828 S22: -0.2474 S23: -0.1995 REMARK 3 S31: 0.9772 S32: 1.0782 S33: -0.3436 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6760 -7.7560 -11.0730 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0287 REMARK 3 T33: -0.0397 T12: -0.0193 REMARK 3 T13: -0.0096 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.9144 L22: 1.3659 REMARK 3 L33: 1.3444 L12: -0.4509 REMARK 3 L13: 0.9498 L23: -0.0421 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: -0.4148 S13: -0.1406 REMARK 3 S21: 0.2024 S22: 0.0556 S23: 0.0413 REMARK 3 S31: 0.0195 S32: -0.0226 S33: -0.0983 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 352 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1490 -2.3460 -5.1440 REMARK 3 T TENSOR REMARK 3 T11: 0.0431 T22: 0.0937 REMARK 3 T33: -0.0337 T12: -0.0103 REMARK 3 T13: -0.0001 T23: -0.0809 REMARK 3 L TENSOR REMARK 3 L11: 3.2338 L22: 2.6518 REMARK 3 L33: 8.0144 L12: -0.6692 REMARK 3 L13: 1.3006 L23: -1.5501 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.6335 S13: 0.2584 REMARK 3 S21: 0.2909 S22: 0.2343 S23: 0.0960 REMARK 3 S31: -0.0785 S32: -0.2294 S33: -0.1921 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 389 A 426 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9660 -6.9340 -20.7700 REMARK 3 T TENSOR REMARK 3 T11: 0.0586 T22: 0.0098 REMARK 3 T33: 0.0089 T12: -0.0193 REMARK 3 T13: -0.0066 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.6964 L22: 0.3879 REMARK 3 L33: 1.2595 L12: -0.1352 REMARK 3 L13: 1.5244 L23: -0.0132 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.0895 S13: -0.0657 REMARK 3 S21: 0.0496 S22: -0.0321 S23: 0.0536 REMARK 3 S31: -0.0029 S32: 0.1464 S33: -0.0073 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 427 A 447 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3420 -20.1960 -45.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: -0.0050 REMARK 3 T33: -0.0001 T12: -0.0058 REMARK 3 T13: -0.0172 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.9944 L22: 2.2312 REMARK 3 L33: 3.8742 L12: -1.8910 REMARK 3 L13: -0.0582 L23: 0.5789 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: 0.0142 S13: -0.0987 REMARK 3 S21: -0.1132 S22: -0.0895 S23: 0.0570 REMARK 3 S31: 0.2312 S32: -0.0664 S33: -0.0021 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 448 A 461 REMARK 3 ORIGIN FOR THE GROUP (A): -20.8670 -12.5890 -52.9150 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0600 REMARK 3 T33: -0.0193 T12: 0.0378 REMARK 3 T13: -0.0075 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 6.5756 L22: 4.9567 REMARK 3 L33: 5.1811 L12: -2.8482 REMARK 3 L13: 0.8871 L23: -0.5513 REMARK 3 S TENSOR REMARK 3 S11: 0.1884 S12: 0.3508 S13: 0.4120 REMARK 3 S21: -0.1237 S22: -0.2035 S23: -0.1579 REMARK 3 S31: -0.1364 S32: -0.0458 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 462 A 484 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1840 -0.7220 -57.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.2639 T22: 0.2003 REMARK 3 T33: 0.0157 T12: 0.0120 REMARK 3 T13: 0.0995 T23: 0.0687 REMARK 3 L TENSOR REMARK 3 L11: 3.3570 L22: 6.2386 REMARK 3 L33: 3.2061 L12: 1.2123 REMARK 3 L13: 2.9453 L23: -0.8359 REMARK 3 S TENSOR REMARK 3 S11: 0.3735 S12: 0.3832 S13: 0.4884 REMARK 3 S21: -1.1835 S22: 0.1059 S23: -0.4308 REMARK 3 S31: -0.6054 S32: 0.6698 S33: -0.4793 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 485 A 511 REMARK 3 ORIGIN FOR THE GROUP (A): -38.5940 -5.8630 -45.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.0824 REMARK 3 T33: -0.0674 T12: 0.0670 REMARK 3 T13: -0.0362 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 3.1521 L22: 1.8016 REMARK 3 L33: 4.3139 L12: -0.6472 REMARK 3 L13: -2.9893 L23: 1.1772 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: 0.4367 S13: 0.0610 REMARK 3 S21: -0.1408 S22: -0.1960 S23: 0.1949 REMARK 3 S31: 0.0180 S32: -0.1287 S33: 0.0571 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 512 A 519 REMARK 3 ORIGIN FOR THE GROUP (A): -46.1830 -1.7230 -41.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.0563 REMARK 3 T33: -0.0246 T12: -0.0229 REMARK 3 T13: -0.0506 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 10.1320 L22: 8.2715 REMARK 3 L33: 7.5520 L12: -6.2355 REMARK 3 L13: -5.7186 L23: 0.1195 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: 0.4270 S13: -0.2568 REMARK 3 S21: 0.0407 S22: 0.2147 S23: 0.7462 REMARK 3 S31: 0.3460 S32: -0.5641 S33: -0.2614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 27.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YUK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM ACETATE, 0.1M SODIUM REMARK 280 ACETATE, PH4.6, 18% PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.42650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 766 O HOH A 784 2.15 REMARK 500 O HOH A 766 O HOH A 787 2.16 REMARK 500 O HOH A 641 O HOH A 772 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 766 O HOH A 783 2454 1.59 REMARK 500 O7 NAG A 302 O HOH A 771 1565 2.17 REMARK 500 NH2 ARG A 466 O HOH A 688 2453 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 484 CB CYS A 484 SG -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 67.63 -160.57 REMARK 500 HIS A 69 -88.52 -49.57 REMARK 500 HIS A 69 -97.63 -36.65 REMARK 500 LYS A 340 -55.83 -128.75 REMARK 500 ASN A 384 -1.48 72.94 REMARK 500 HIS A 438 18.07 56.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 69 ASN A 70 149.61 REMARK 500 HIS A 69 ASN A 70 148.17 REMARK 500 GLY A 465 ARG A 466 130.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P28 RELATED DB: PDB DBREF 2P26 A 1 100 UNP P05107 ITB2_HUMAN 23 122 DBREF 2P26 A 340 513 UNP P05107 ITB2_HUMAN 362 535 SEQADV 2P26 HIS A 514 UNP P05107 EXPRESSION TAG SEQADV 2P26 HIS A 515 UNP P05107 EXPRESSION TAG SEQADV 2P26 HIS A 516 UNP P05107 EXPRESSION TAG SEQADV 2P26 HIS A 517 UNP P05107 EXPRESSION TAG SEQADV 2P26 HIS A 518 UNP P05107 EXPRESSION TAG SEQADV 2P26 HIS A 519 UNP P05107 EXPRESSION TAG SEQRES 1 A 280 GLN GLU CYS THR LYS PHE LYS VAL SER SER CYS ARG GLU SEQRES 2 A 280 CYS ILE GLU SER GLY PRO GLY CYS THR TRP CYS GLN LYS SEQRES 3 A 280 LEU ASN PHE THR GLY PRO GLY ASP PRO ASP SER ILE ARG SEQRES 4 A 280 CYS ASP THR ARG PRO GLN LEU LEU MET ARG GLY CYS ALA SEQRES 5 A 280 ALA ASP ASP ILE MET ASP PRO THR SER LEU ALA GLU THR SEQRES 6 A 280 GLN GLU ASP HIS ASN GLY GLY GLN LYS GLN LEU SER PRO SEQRES 7 A 280 GLN LYS VAL THR LEU TYR LEU ARG PRO GLY GLN ALA ALA SEQRES 8 A 280 ALA PHE ASN VAL THR PHE ARG ARG ALA LYS LEU SER SER SEQRES 9 A 280 ARG VAL PHE LEU ASP HIS ASN ALA LEU PRO ASP THR LEU SEQRES 10 A 280 LYS VAL THR TYR ASP SER PHE CYS SER ASN GLY VAL THR SEQRES 11 A 280 HIS ARG ASN GLN PRO ARG GLY ASP CYS ASP GLY VAL GLN SEQRES 12 A 280 ILE ASN VAL PRO ILE THR PHE GLN VAL LYS VAL THR ALA SEQRES 13 A 280 THR GLU CYS ILE GLN GLU GLN SER PHE VAL ILE ARG ALA SEQRES 14 A 280 LEU GLY PHE THR ASP ILE VAL THR VAL GLN VAL LEU PRO SEQRES 15 A 280 GLN CYS GLU CYS ARG CYS ARG ASP GLN SER ARG ASP ARG SEQRES 16 A 280 SER LEU CYS HIS GLY LYS GLY PHE LEU GLU CYS GLY ILE SEQRES 17 A 280 CYS ARG CYS ASP THR GLY TYR ILE GLY LYS ASN CYS GLU SEQRES 18 A 280 CYS GLN THR GLN GLY ARG SER SER GLN GLU LEU GLU GLY SEQRES 19 A 280 SER CYS ARG LYS ASP ASN ASN SER ILE ILE CYS SER GLY SEQRES 20 A 280 LEU GLY ASP CYS VAL CYS GLY GLN CYS LEU CYS HIS THR SEQRES 21 A 280 SER ASP VAL PRO GLY LYS LEU ILE TYR GLY GLN TYR CYS SEQRES 22 A 280 GLU HIS HIS HIS HIS HIS HIS MODRES 2P26 ASN A 28 ASN GLYCOSYLATION SITE MODRES 2P26 ASN A 94 ASN GLYCOSYLATION SITE MODRES 2P26 ASN A 479 ASN GLYCOSYLATION SITE HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 HOH *268(H2 O) HELIX 1 1 SER A 10 GLU A 16 1 7 HELIX 2 2 PRO A 35 ILE A 38 5 4 HELIX 3 3 THR A 42 ARG A 49 1 8 HELIX 4 4 ALA A 52 ASP A 54 5 3 HELIX 5 5 SER A 435 GLY A 439 5 5 HELIX 6 6 SER A 467 SER A 474 1 8 HELIX 7 7 ILE A 482 GLY A 486 5 5 SHEET 1 A 3 CYS A 40 ASP A 41 0 SHEET 2 A 3 THR A 22 CYS A 24 -1 N THR A 22 O ASP A 41 SHEET 3 A 3 ILE A 56 MET A 57 -1 O MET A 57 N TRP A 23 SHEET 1 B 6 LEU A 62 GLN A 66 0 SHEET 2 B 6 LYS A 80 LEU A 85 -1 O THR A 82 N GLU A 64 SHEET 3 B 6 VAL A 415 PRO A 421 1 O GLN A 418 N LEU A 83 SHEET 4 B 6 GLN A 402 ALA A 408 -1 N GLN A 402 O VAL A 419 SHEET 5 B 6 VAL A 345 HIS A 349 -1 N ASP A 348 O ARG A 407 SHEET 6 B 6 GLY A 376 CYS A 378 -1 O CYS A 378 N VAL A 345 SHEET 1 C 5 LEU A 76 SER A 77 0 SHEET 2 C 5 ALA A 91 PHE A 97 -1 O THR A 96 N SER A 77 SHEET 3 C 5 ILE A 387 ALA A 395 -1 O VAL A 391 N PHE A 93 SHEET 4 C 5 LEU A 356 PHE A 363 -1 N PHE A 363 O THR A 388 SHEET 5 C 5 THR A 369 GLN A 373 -1 O HIS A 370 N SER A 362 SHEET 1 D 2 GLY A 441 GLU A 444 0 SHEET 2 D 2 ILE A 447 CYS A 450 -1 O ARG A 449 N PHE A 442 SHEET 1 E 2 TYR A 454 ILE A 455 0 SHEET 2 E 2 CYS A 461 GLN A 462 -1 O CYS A 461 N ILE A 455 SHEET 1 F 2 GLY A 488 VAL A 491 0 SHEET 2 F 2 GLN A 494 CYS A 497 -1 O LEU A 496 N ASP A 489 SHEET 1 G 2 LEU A 506 TYR A 508 0 SHEET 2 G 2 HIS A 514 HIS A 516 -1 O HIS A 516 N LEU A 506 SSBOND 1 CYS A 3 CYS A 21 1555 1555 2.04 SSBOND 2 CYS A 11 CYS A 425 1555 1555 2.01 SSBOND 3 CYS A 14 CYS A 40 1555 1555 2.02 SSBOND 4 CYS A 24 CYS A 51 1555 1555 2.04 SSBOND 5 CYS A 364 CYS A 378 1555 1555 2.04 SSBOND 6 CYS A 398 CYS A 423 1555 1555 2.03 SSBOND 7 CYS A 427 CYS A 445 1555 1555 2.02 SSBOND 8 CYS A 437 CYS A 448 1555 1555 2.03 SSBOND 9 CYS A 450 CYS A 459 1555 1555 2.04 SSBOND 10 CYS A 461 CYS A 492 1555 1555 2.03 SSBOND 11 CYS A 475 CYS A 490 1555 1555 2.03 SSBOND 12 CYS A 484 CYS A 495 1555 1555 2.07 SSBOND 13 CYS A 497 CYS A 512 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 303 1555 1555 1.44 LINK ND2 ASN A 94 C1 NAG A 301 1555 1555 1.44 LINK C1 NAG A 302 ND2 ASN A 479 1555 1555 1.45 CISPEP 1 GLN A 1 GLU A 2 0 6.41 CISPEP 2 GLN A 1 GLU A 2 0 0.31 CISPEP 3 GLY A 71 GLY A 72 0 24.64 CISPEP 4 SER A 77 PRO A 78 0 -2.70 CISPEP 5 LEU A 341 SER A 342 0 4.21 CISPEP 6 ASN A 366 GLY A 367 0 -6.57 CISPEP 7 PRO A 503 GLY A 504 0 -14.71 CRYST1 58.489 30.853 65.157 90.00 94.29 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017097 0.000000 0.001283 0.00000 SCALE2 0.000000 0.032412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015391 0.00000