data_2P3B # _entry.id 2P3B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2P3B pdb_00002p3b 10.2210/pdb2p3b/pdb RCSB RCSB041912 ? ? WWPDB D_1000041912 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2013-02-27 5 'Structure model' 1 4 2017-10-18 6 'Structure model' 1 5 2021-10-20 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' Advisory 10 5 'Structure model' 'Refinement description' 11 6 'Structure model' Advisory 12 6 'Structure model' 'Database references' 13 6 'Structure model' 'Derived calculations' 14 7 'Structure model' 'Data collection' 15 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 5 'Structure model' software 3 6 'Structure model' database_2 4 6 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 6 'Structure model' struct_conn 6 6 'Structure model' struct_ref_seq_dif 7 6 'Structure model' struct_site 8 7 'Structure model' chem_comp_atom 9 7 'Structure model' chem_comp_bond 10 7 'Structure model' pdbx_initial_refinement_model 11 7 'Structure model' struct_ncs_dom_lim # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.contact_author' 3 5 'Structure model' '_software.contact_author_email' 4 5 'Structure model' '_software.date' 5 5 'Structure model' '_software.language' 6 5 'Structure model' '_software.location' 7 5 'Structure model' '_software.name' 8 5 'Structure model' '_software.type' 9 5 'Structure model' '_software.version' 10 6 'Structure model' '_database_2.pdbx_DOI' 11 6 'Structure model' '_database_2.pdbx_database_accession' 12 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 6 'Structure model' '_struct_ref_seq_dif.details' 14 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 6 'Structure model' '_struct_site.pdbx_auth_seq_id' 17 7 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 18 7 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' # _pdbx_database_status.entry_id 2P3B _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-03-08 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3TLH 'Same dataset previously published in P6(1)22 space group.' unspecified PDB 2P3A 'Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sanches, M.' 1 'Krauchenco, S.' 2 'Martins, N.H.' 3 'Gustchina, A.' 4 'Wlodawer, A.' 5 'Polikarpov, I.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Structural Characterization of B and non-B Subtypes of HIV-Protease: Insights into the Natural Susceptibility to Drug Resistance Development. ; J.Mol.Biol. 369 1029 1040 2007 JMOBAK UK 0022-2836 0070 ? 17467738 10.1016/j.jmb.2007.03.049 1 'Crystallization of a non-B and a B mutant HIV protease' 'Acta Crystallogr.,Sect.D' D60 1625 1627 2004 ABCRE6 DK 0907-4449 0766 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sanches, M.' 1 ? primary 'Krauchenco, S.' 2 ? primary 'Martins, N.H.' 3 ? primary 'Gustchina, A.' 4 ? primary 'Wlodawer, A.' 5 ? primary 'Polikarpov, I.' 6 ? 1 'Sanches, M.' 7 ? 1 'Martins, N.H.' 8 ? 1 'Calazans, A.' 9 ? 1 'Brindeiro, R.M.' 10 ? 1 'Tanuri, A.' 11 ? 1 'Antunes, O.A.C.' 12 ? 1 'Polikarpov, I.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man protease 10804.808 1 3.4.23.16 ? ? 'CYS at position 67' 2 polymer man protease 10880.926 1 3.4.23.16 ? ? 'CME at position 67' 3 non-polymer syn ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 909.077 1 ? ? ? ? 4 water nat water 18.015 98 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; A ? 2 'polypeptide(L)' no yes ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEI(CME)GHKAIGTVL VGPTPVNIIGRNLLTQIGCTLNF ; ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 3TL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n 2 1 PRO n 2 2 GLN n 2 3 ILE n 2 4 THR n 2 5 LEU n 2 6 TRP n 2 7 LYS n 2 8 ARG n 2 9 PRO n 2 10 LEU n 2 11 VAL n 2 12 THR n 2 13 ILE n 2 14 LYS n 2 15 ILE n 2 16 GLY n 2 17 GLY n 2 18 GLN n 2 19 LEU n 2 20 LYS n 2 21 GLU n 2 22 ALA n 2 23 LEU n 2 24 LEU n 2 25 ASP n 2 26 THR n 2 27 GLY n 2 28 ALA n 2 29 ASP n 2 30 ASP n 2 31 THR n 2 32 VAL n 2 33 LEU n 2 34 GLU n 2 35 GLU n 2 36 MET n 2 37 SER n 2 38 LEU n 2 39 PRO n 2 40 GLY n 2 41 ARG n 2 42 TRP n 2 43 LYS n 2 44 PRO n 2 45 LYS n 2 46 MET n 2 47 ILE n 2 48 GLY n 2 49 GLY n 2 50 ILE n 2 51 GLY n 2 52 GLY n 2 53 PHE n 2 54 ILE n 2 55 LYS n 2 56 VAL n 2 57 ARG n 2 58 GLN n 2 59 TYR n 2 60 ASP n 2 61 GLN n 2 62 ILE n 2 63 LEU n 2 64 ILE n 2 65 GLU n 2 66 ILE n 2 67 CME n 2 68 GLY n 2 69 HIS n 2 70 LYS n 2 71 ALA n 2 72 ILE n 2 73 GLY n 2 74 THR n 2 75 VAL n 2 76 LEU n 2 77 VAL n 2 78 GLY n 2 79 PRO n 2 80 THR n 2 81 PRO n 2 82 VAL n 2 83 ASN n 2 84 ILE n 2 85 ILE n 2 86 GLY n 2 87 ARG n 2 88 ASN n 2 89 LEU n 2 90 LEU n 2 91 THR n 2 92 GLN n 2 93 ILE n 2 94 GLY n 2 95 CYS n 2 96 THR n 2 97 LEU n 2 98 ASN n 2 99 PHE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Lentivirus gag-pol ? ? ? ? ? ? 'Human immunodeficiency virus 1' 11676 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? PET11A ? ? 2 1 sample ? ? ? ? Lentivirus gag-pol ? ? ? ? ? ? 'Human immunodeficiency virus 1' 11676 ? ? ? ? ? ? ? ? 'Escherichia coli BL21(DE3)' 469008 Escherichia ? ? 'Escherichia coli' ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? PET11A ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3TL peptide-like . ;benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate ; 'TL-3, C2 symmetric inhibitor' 'C50 H64 N6 O10' 909.077 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CME 'L-peptide linking' n 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' ? 'C5 H11 N O3 S2' 197.276 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 2 1 PRO 1 1 1 PRO PRO B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 ILE 3 3 3 ILE ILE B . n B 2 4 THR 4 4 4 THR THR B . n B 2 5 LEU 5 5 5 LEU LEU B . n B 2 6 TRP 6 6 6 TRP TRP B . n B 2 7 LYS 7 7 7 LYS LYS B . n B 2 8 ARG 8 8 8 ARG ARG B . n B 2 9 PRO 9 9 9 PRO PRO B . n B 2 10 LEU 10 10 10 LEU LEU B . n B 2 11 VAL 11 11 11 VAL VAL B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 ILE 13 13 13 ILE ILE B . n B 2 14 LYS 14 14 14 LYS LYS B . n B 2 15 ILE 15 15 15 ILE ILE B . n B 2 16 GLY 16 16 16 GLY GLY B . n B 2 17 GLY 17 17 17 GLY GLY B . n B 2 18 GLN 18 18 18 GLN GLN B . n B 2 19 LEU 19 19 19 LEU LEU B . n B 2 20 LYS 20 20 20 LYS LYS B . n B 2 21 GLU 21 21 21 GLU GLU B . n B 2 22 ALA 22 22 22 ALA ALA B . n B 2 23 LEU 23 23 23 LEU LEU B . n B 2 24 LEU 24 24 24 LEU LEU B . n B 2 25 ASP 25 25 25 ASP ASP B . n B 2 26 THR 26 26 26 THR THR B . n B 2 27 GLY 27 27 27 GLY GLY B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 ASP 29 29 29 ASP ASP B . n B 2 30 ASP 30 30 30 ASP ASP B . n B 2 31 THR 31 31 31 THR THR B . n B 2 32 VAL 32 32 32 VAL VAL B . n B 2 33 LEU 33 33 33 LEU LEU B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLU 35 35 35 GLU GLU B . n B 2 36 MET 36 36 36 MET MET B . n B 2 37 SER 37 37 37 SER SER B . n B 2 38 LEU 38 38 38 LEU LEU B . n B 2 39 PRO 39 39 39 PRO PRO B . n B 2 40 GLY 40 40 40 GLY GLY B . n B 2 41 ARG 41 41 41 ARG ARG B . n B 2 42 TRP 42 42 42 TRP TRP B . n B 2 43 LYS 43 43 43 LYS LYS B . n B 2 44 PRO 44 44 44 PRO PRO B . n B 2 45 LYS 45 45 45 LYS LYS B . n B 2 46 MET 46 46 46 MET MET B . n B 2 47 ILE 47 47 47 ILE ILE B . n B 2 48 GLY 48 48 48 GLY GLY B . n B 2 49 GLY 49 49 49 GLY GLY B . n B 2 50 ILE 50 50 50 ILE ILE B . n B 2 51 GLY 51 51 51 GLY GLY B . n B 2 52 GLY 52 52 52 GLY GLY B . n B 2 53 PHE 53 53 53 PHE PHE B . n B 2 54 ILE 54 54 54 ILE ILE B . n B 2 55 LYS 55 55 55 LYS LYS B . n B 2 56 VAL 56 56 56 VAL VAL B . n B 2 57 ARG 57 57 57 ARG ARG B . n B 2 58 GLN 58 58 58 GLN GLN B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASP 60 60 60 ASP ASP B . n B 2 61 GLN 61 61 61 GLN GLN B . n B 2 62 ILE 62 62 62 ILE ILE B . n B 2 63 LEU 63 63 63 LEU LEU B . n B 2 64 ILE 64 64 64 ILE ILE B . n B 2 65 GLU 65 65 65 GLU GLU B . n B 2 66 ILE 66 66 66 ILE ILE B . n B 2 67 CME 67 67 67 CME CME B . n B 2 68 GLY 68 68 68 GLY GLY B . n B 2 69 HIS 69 69 69 HIS HIS B . n B 2 70 LYS 70 70 70 LYS LYS B . n B 2 71 ALA 71 71 71 ALA ALA B . n B 2 72 ILE 72 72 72 ILE ILE B . n B 2 73 GLY 73 73 73 GLY GLY B . n B 2 74 THR 74 74 74 THR THR B . n B 2 75 VAL 75 75 75 VAL VAL B . n B 2 76 LEU 76 76 76 LEU LEU B . n B 2 77 VAL 77 77 77 VAL VAL B . n B 2 78 GLY 78 78 78 GLY GLY B . n B 2 79 PRO 79 79 79 PRO PRO B . n B 2 80 THR 80 80 80 THR THR B . n B 2 81 PRO 81 81 81 PRO PRO B . n B 2 82 VAL 82 82 82 VAL VAL B . n B 2 83 ASN 83 83 83 ASN ASN B . n B 2 84 ILE 84 84 84 ILE ILE B . n B 2 85 ILE 85 85 85 ILE ILE B . n B 2 86 GLY 86 86 86 GLY GLY B . n B 2 87 ARG 87 87 87 ARG ARG B . n B 2 88 ASN 88 88 88 ASN ASN B . n B 2 89 LEU 89 89 89 LEU LEU B . n B 2 90 LEU 90 90 90 LEU LEU B . n B 2 91 THR 91 91 91 THR THR B . n B 2 92 GLN 92 92 92 GLN GLN B . n B 2 93 ILE 93 93 93 ILE ILE B . n B 2 94 GLY 94 94 94 GLY GLY B . n B 2 95 CYS 95 95 95 CYS CYS B . n B 2 96 THR 96 96 96 THR THR B . n B 2 97 LEU 97 97 97 LEU LEU B . n B 2 98 ASN 98 98 98 ASN ASN B . n B 2 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3TL 1 101 101 3TL 3TL A . D 4 HOH 1 102 1 HOH HOH A . D 4 HOH 2 103 3 HOH HOH A . D 4 HOH 3 104 6 HOH HOH A . D 4 HOH 4 105 7 HOH HOH A . D 4 HOH 5 106 8 HOH HOH A . D 4 HOH 6 107 10 HOH HOH A . D 4 HOH 7 108 11 HOH HOH A . D 4 HOH 8 109 14 HOH HOH A . D 4 HOH 9 110 16 HOH HOH A . D 4 HOH 10 111 19 HOH HOH A . D 4 HOH 11 112 20 HOH HOH A . D 4 HOH 12 113 21 HOH HOH A . D 4 HOH 13 114 23 HOH HOH A . D 4 HOH 14 115 25 HOH HOH A . D 4 HOH 15 116 27 HOH HOH A . D 4 HOH 16 117 31 HOH HOH A . D 4 HOH 17 118 32 HOH HOH A . D 4 HOH 18 119 33 HOH HOH A . D 4 HOH 19 120 34 HOH HOH A . D 4 HOH 20 121 35 HOH HOH A . D 4 HOH 21 122 36 HOH HOH A . D 4 HOH 22 123 38 HOH HOH A . D 4 HOH 23 124 44 HOH HOH A . D 4 HOH 24 125 45 HOH HOH A . D 4 HOH 25 126 47 HOH HOH A . D 4 HOH 26 127 51 HOH HOH A . D 4 HOH 27 128 52 HOH HOH A . D 4 HOH 28 129 53 HOH HOH A . D 4 HOH 29 130 54 HOH HOH A . D 4 HOH 30 131 55 HOH HOH A . D 4 HOH 31 132 57 HOH HOH A . D 4 HOH 32 133 60 HOH HOH A . D 4 HOH 33 134 63 HOH HOH A . D 4 HOH 34 135 64 HOH HOH A . D 4 HOH 35 136 65 HOH HOH A . D 4 HOH 36 137 67 HOH HOH A . D 4 HOH 37 138 68 HOH HOH A . D 4 HOH 38 139 69 HOH HOH A . D 4 HOH 39 140 70 HOH HOH A . D 4 HOH 40 141 74 HOH HOH A . D 4 HOH 41 142 76 HOH HOH A . D 4 HOH 42 143 79 HOH HOH A . D 4 HOH 43 144 80 HOH HOH A . D 4 HOH 44 145 83 HOH HOH A . D 4 HOH 45 146 84 HOH HOH A . D 4 HOH 46 147 85 HOH HOH A . D 4 HOH 47 148 87 HOH HOH A . D 4 HOH 48 149 94 HOH HOH A . D 4 HOH 49 150 95 HOH HOH A . E 4 HOH 1 100 2 HOH HOH B . E 4 HOH 2 101 4 HOH HOH B . E 4 HOH 3 102 5 HOH HOH B . E 4 HOH 4 103 9 HOH HOH B . E 4 HOH 5 104 12 HOH HOH B . E 4 HOH 6 105 13 HOH HOH B . E 4 HOH 7 106 15 HOH HOH B . E 4 HOH 8 107 17 HOH HOH B . E 4 HOH 9 108 18 HOH HOH B . E 4 HOH 10 109 22 HOH HOH B . E 4 HOH 11 110 24 HOH HOH B . E 4 HOH 12 111 26 HOH HOH B . E 4 HOH 13 112 28 HOH HOH B . E 4 HOH 14 113 29 HOH HOH B . E 4 HOH 15 114 30 HOH HOH B . E 4 HOH 16 115 37 HOH HOH B . E 4 HOH 17 116 39 HOH HOH B . E 4 HOH 18 117 40 HOH HOH B . E 4 HOH 19 118 41 HOH HOH B . E 4 HOH 20 119 42 HOH HOH B . E 4 HOH 21 120 43 HOH HOH B . E 4 HOH 22 121 46 HOH HOH B . E 4 HOH 23 122 48 HOH HOH B . E 4 HOH 24 123 49 HOH HOH B . E 4 HOH 25 124 50 HOH HOH B . E 4 HOH 26 125 56 HOH HOH B . E 4 HOH 27 126 58 HOH HOH B . E 4 HOH 28 127 59 HOH HOH B . E 4 HOH 29 128 61 HOH HOH B . E 4 HOH 30 129 62 HOH HOH B . E 4 HOH 31 130 66 HOH HOH B . E 4 HOH 32 131 71 HOH HOH B . E 4 HOH 33 132 72 HOH HOH B . E 4 HOH 34 133 73 HOH HOH B . E 4 HOH 35 134 75 HOH HOH B . E 4 HOH 36 135 77 HOH HOH B . E 4 HOH 37 136 78 HOH HOH B . E 4 HOH 38 137 81 HOH HOH B . E 4 HOH 39 138 82 HOH HOH B . E 4 HOH 40 139 86 HOH HOH B . E 4 HOH 41 140 88 HOH HOH B . E 4 HOH 42 141 89 HOH HOH B . E 4 HOH 43 142 90 HOH HOH B . E 4 HOH 44 143 91 HOH HOH B . E 4 HOH 45 144 92 HOH HOH B . E 4 HOH 46 145 93 HOH HOH B . E 4 HOH 47 146 96 HOH HOH B . E 4 HOH 48 147 97 HOH HOH B . E 4 HOH 49 148 98 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A ARG 41 ? CG ? A ARG 41 CG 2 1 Y 0 A ARG 41 ? CD ? A ARG 41 CD 3 1 Y 0 A ARG 41 ? NE ? A ARG 41 NE 4 1 Y 0 A ARG 41 ? CZ ? A ARG 41 CZ 5 1 Y 0 A ARG 41 ? NH1 ? A ARG 41 NH1 6 1 Y 0 A ARG 41 ? NH2 ? A ARG 41 NH2 7 1 Y 0 A LYS 43 ? CD ? A LYS 43 CD 8 1 Y 0 A LYS 43 ? CE ? A LYS 43 CE 9 1 Y 0 A LYS 43 ? NZ ? A LYS 43 NZ 10 1 Y 0 A LYS 55 ? CG ? A LYS 55 CG 11 1 Y 0 A LYS 55 ? CD ? A LYS 55 CD 12 1 Y 0 A LYS 55 ? CE ? A LYS 55 CE 13 1 Y 0 A LYS 55 ? NZ ? A LYS 55 NZ 14 1 Y 0 B SER 37 ? OG ? B SER 37 OG 15 1 Y 0 B ARG 41 ? CG ? B ARG 41 CG 16 1 Y 0 B ARG 41 ? CD ? B ARG 41 CD 17 1 Y 0 B ARG 41 ? NE ? B ARG 41 NE 18 1 Y 0 B ARG 41 ? CZ ? B ARG 41 CZ 19 1 Y 0 B ARG 41 ? NH1 ? B ARG 41 NH1 20 1 Y 0 B ARG 41 ? NH2 ? B ARG 41 NH2 21 1 Y 0 B LYS 43 ? CD ? B LYS 43 CD 22 1 Y 0 B LYS 43 ? CE ? B LYS 43 CE 23 1 Y 0 B LYS 43 ? NZ ? B LYS 43 NZ 24 1 Y 0 B LYS 55 ? CG ? B LYS 55 CG 25 1 Y 0 B LYS 55 ? CD ? B LYS 55 CD 26 1 Y 0 B LYS 55 ? CE ? B LYS 55 CE 27 1 Y 0 B LYS 55 ? NZ ? B LYS 55 NZ 28 1 Y 0 B CME 67 ? SD B B CME 67 SD 29 1 Y 0 B CME 67 ? CE B B CME 67 CE 30 1 Y 0 B CME 67 ? CZ B B CME 67 CZ 31 1 Y 0 B CME 67 ? OH B B CME 67 OH # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0003 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 MAR345 345DTB ? ? ? ? 'data collection' ? ? ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? 7 # _cell.entry_id 2P3B _cell.length_a 63.164 _cell.length_b 63.164 _cell.length_c 83.414 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P3B _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2P3B _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;15% saturated ammonium sulfate solution, 6% (v/v) MPD, 85mM sodium citrate/170mM sodium phosphate, 0.02% sodium azide, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 1998-02-01 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2P3B _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.10 _reflns.d_resolution_low 54.72 _reflns.number_all ? _reflns.number_obs 11047 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.21 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.414 _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.number_unique_all 1587 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2P3B _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 16.580 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.820 _refine.ls_number_reflns_obs 11011 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.165 _refine.ls_R_factor_R_work 0.159 _refine.ls_R_factor_R_free 0.219 _refine.ls_percent_reflns_R_free 9.800 _refine.ls_number_reflns_R_free 1084 _refine.B_iso_mean 31.322 _refine.aniso_B[1][1] 0.040 _refine.aniso_B[2][2] 0.040 _refine.aniso_B[3][3] -0.060 _refine.aniso_B[1][2] 0.020 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.pdbx_overall_ESU_R_Free 0.202 _refine.overall_SU_ML 0.142 _refine.overall_SU_B 10.370 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1520 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 1684 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 16.580 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1737 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2366 1.575 2.055 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 212 6.534 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 52 40.853 25.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 282 17.262 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 18.410 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 277 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1268 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 690 0.222 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1184 0.320 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 91 0.230 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 26 0.172 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 2 0.111 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1066 1.638 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1684 2.840 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 758 2.785 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 682 3.911 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1678 1.947 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 1563 13.270 3.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 'TIGHT POSITIONAL' A 649 0.030 0.050 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? 1 'MEDIUM POSITIONAL' A 109 0.200 0.500 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? 1 'TIGHT THERMAL' A 649 0.090 0.500 1 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? 1 'MEDIUM THERMAL' A 109 0.630 2.000 1 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? # _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 708 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.191 _refine_ls_shell.R_factor_R_free 0.273 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 782 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 1 3 A 1 4 B 1 5 A 1 6 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A PRO 1 . A GLU 34 . A PRO 1 A GLU 34 1 ? 1 2 1 B PRO 1 . B GLU 34 . B PRO 1 B GLU 34 1 ? 1 3 2 A GLU 35 . A ILE 64 . A GLU 35 A ILE 64 2 ? 1 4 2 B GLU 35 . B ILE 64 . B GLU 35 B ILE 64 2 ? 1 5 3 A GLU 65 . A PHE 99 . A GLU 65 A PHE 99 1 ? 1 6 3 B GLU 65 . B PHE 99 . B GLU 65 B PHE 99 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 2P3B _struct.title 'Crystal Structure of the subtype B wild type HIV protease complexed with TL-3 inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P3B _struct_keywords.text 'wild type subtype B HIV protease, TL-3 inhibitor, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP POL_HV1BR P03367 1 ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; 501 ? 2 UNP POL_HV1BR P03367 2 ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; 501 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2P3B A 1 ? 99 ? P03367 501 ? 599 ? 1 99 2 2 2P3B B 1 ? 99 ? P03367 501 ? 599 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2P3B LYS A 7 ? UNP P03367 GLN 507 'engineered mutation' 7 1 2 2P3B LYS B 7 ? UNP P03367 GLN 507 'engineered mutation' 7 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5180 ? 1 MORE -26 ? 1 'SSA (A^2)' 9560 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ILE 66 C ? ? ? 1_555 B CME 67 N A ? B ILE 66 B CME 67 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? B ILE 66 C ? ? ? 1_555 B CME 67 N B ? B ILE 66 B CME 67 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? B CME 67 C A ? ? 1_555 B GLY 68 N ? ? B CME 67 B GLY 68 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? B CME 67 C B ? ? 1_555 B GLY 68 N ? ? B CME 67 B GLY 68 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? LEU B 33 ? VAL B 32 LEU B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O ASN B 98 ? O ASN B 98 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 N LYS A 45 ? N LYS A 45 O VAL A 56 ? O VAL A 56 B 2 3 N ARG A 57 ? N ARG A 57 O VAL A 77 ? O VAL A 77 B 3 4 O LEU A 76 ? O LEU A 76 N LEU A 33 ? N LEU A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 45 ? N LYS B 45 O VAL B 56 ? O VAL B 56 C 2 3 N ARG B 57 ? N ARG B 57 O VAL B 77 ? O VAL B 77 C 3 4 O LEU B 76 ? O LEU B 76 N LEU B 33 ? N LEU B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 3TL _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 34 _struct_site.details 'BINDING SITE FOR RESIDUE 3TL A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 34 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 34 ASP A 25 ? ASP A 25 . ? 1_555 ? 3 AC1 34 GLY A 27 ? GLY A 27 . ? 1_555 ? 4 AC1 34 ALA A 28 ? ALA A 28 . ? 1_555 ? 5 AC1 34 ASP A 29 ? ASP A 29 . ? 1_555 ? 6 AC1 34 MET A 46 ? MET A 46 . ? 1_555 ? 7 AC1 34 ILE A 47 ? ILE A 47 . ? 1_555 ? 8 AC1 34 GLY A 48 ? GLY A 48 . ? 1_555 ? 9 AC1 34 GLY A 48 ? GLY A 48 . ? 5_554 ? 10 AC1 34 GLY A 49 ? GLY A 49 . ? 1_555 ? 11 AC1 34 ILE A 50 ? ILE A 50 . ? 1_555 ? 12 AC1 34 PHE A 53 ? PHE A 53 . ? 5_554 ? 13 AC1 34 PRO A 81 ? PRO A 81 . ? 6_555 ? 14 AC1 34 PRO A 81 ? PRO A 81 . ? 1_555 ? 15 AC1 34 VAL A 82 ? VAL A 82 . ? 1_555 ? 16 AC1 34 ILE A 84 ? ILE A 84 . ? 1_555 ? 17 AC1 34 HOH D . ? HOH A 102 . ? 1_555 ? 18 AC1 34 HOH D . ? HOH A 107 . ? 1_555 ? 19 AC1 34 ARG B 8 ? ARG B 8 . ? 1_555 ? 20 AC1 34 ASP B 25 ? ASP B 25 . ? 1_555 ? 21 AC1 34 GLY B 27 ? GLY B 27 . ? 1_555 ? 22 AC1 34 ALA B 28 ? ALA B 28 . ? 1_555 ? 23 AC1 34 ASP B 29 ? ASP B 29 . ? 1_555 ? 24 AC1 34 MET B 46 ? MET B 46 . ? 1_555 ? 25 AC1 34 ILE B 47 ? ILE B 47 . ? 1_555 ? 26 AC1 34 GLY B 48 ? GLY B 48 . ? 1_555 ? 27 AC1 34 GLY B 49 ? GLY B 49 . ? 1_555 ? 28 AC1 34 ILE B 50 ? ILE B 50 . ? 1_555 ? 29 AC1 34 PHE B 53 ? PHE B 53 . ? 1_555 ? 30 AC1 34 PRO B 81 ? PRO B 81 . ? 5_554 ? 31 AC1 34 PRO B 81 ? PRO B 81 . ? 1_555 ? 32 AC1 34 VAL B 82 ? VAL B 82 . ? 1_555 ? 33 AC1 34 ILE B 84 ? ILE B 84 . ? 1_555 ? 34 AC1 34 HOH E . ? HOH B 105 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 34 ? ? O A HOH 146 ? ? 2.19 2 1 O B HOH 108 ? ? O B HOH 144 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A ARG 41 ? ? CG A ARG 41 ? ? 0.981 1.521 -0.540 0.027 N 2 1 CG A LYS 43 ? ? CD A LYS 43 ? ? 1.268 1.520 -0.252 0.034 N 3 1 CB B SER 37 ? ? OG B SER 37 ? ? 1.076 1.418 -0.342 0.013 N 4 1 CB B ARG 41 ? ? CG B ARG 41 ? ? 0.730 1.521 -0.791 0.027 N 5 1 CG B LYS 43 ? ? CD B LYS 43 ? ? 1.215 1.520 -0.305 0.034 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 41 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 41 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 41 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 146.73 _pdbx_validate_rmsd_angle.angle_target_value 113.40 _pdbx_validate_rmsd_angle.angle_deviation 33.33 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_molecule_features.prd_id PRD_000434 _pdbx_molecule_features.name 'N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000434 _pdbx_molecule.asym_id C # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id CME _pdbx_struct_mod_residue.label_seq_id 67 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id CME _pdbx_struct_mod_residue.auth_seq_id 67 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details 'S,S-(2-HYDROXYETHYL)THIOCYSTEINE' # _pdbx_entry_details.nonpolymer_details 'THE INHIBITOR IS A C2 SYMMETRIC HIV PROTEASE' _pdbx_entry_details.entry_id 2P3B _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3TL C31 C N N 1 3TL O8 O N N 2 3TL O9 O N N 3 3TL CA C N N 4 3TL C C Y N 5 3TL C13 C Y N 6 3TL C14 C Y N 7 3TL C15 C Y N 8 3TL C16 C Y N 9 3TL C17 C Y N 10 3TL N4 N N N 11 3TL C18 C N S 12 3TL C19 C N N 13 3TL O4 O N N 14 3TL C20 C N N 15 3TL N2 N N N 16 3TL C10 C N S 17 3TL C11 C N N 18 3TL O2 O N N 19 3TL C12 C N N 20 3TL CG2 C N N 21 3TL CG1 C N N 22 3TL C2 C N R 23 3TL O1 O N N 24 3TL C1 C N S 25 3TL N1 N N N 26 3TL C3 C N N 27 3TL C4 C Y N 28 3TL C5 C Y N 29 3TL C9 C Y N 30 3TL C6 C Y N 31 3TL C8 C Y N 32 3TL C7 C Y N 33 3TL N51 N N N 34 3TL C51 C N S 35 3TL C52 C N R 36 3TL O51 O N N 37 3TL C53 C N N 38 3TL C54 C Y N 39 3TL C55 C Y N 40 3TL C59 C Y N 41 3TL C56 C Y N 42 3TL C58 C Y N 43 3TL C57 C Y N 44 3TL N52 N N N 45 3TL C60 C N S 46 3TL C61 C N N 47 3TL O52 O N N 48 3TL C62 C N N 49 3TL CG6 C N N 50 3TL CG5 C N N 51 3TL N54 N N N 52 3TL C68 C N S 53 3TL C69 C N N 54 3TL O54 O N N 55 3TL C70 C N N 56 3TL C81 C N N 57 3TL O58 O N N 58 3TL O59 O N N 59 3TL CA5 C N N 60 3TL C50 C Y N 61 3TL C63 C Y N 62 3TL C64 C Y N 63 3TL C65 C Y N 64 3TL C66 C Y N 65 3TL C67 C Y N 66 3TL HA1 H N N 67 3TL HA2 H N N 68 3TL H13 H N N 69 3TL H14 H N N 70 3TL H15 H N N 71 3TL H16 H N N 72 3TL H17 H N N 73 3TL HN4 H N N 74 3TL H18 H N N 75 3TL H201 H N N 76 3TL H202 H N N 77 3TL H203 H N N 78 3TL HN2 H N N 79 3TL H10 H N N 80 3TL H12 H N N 81 3TL HG21 H N N 82 3TL HG22 H N N 83 3TL HG23 H N N 84 3TL HG11 H N N 85 3TL HG12 H N N 86 3TL HG13 H N N 87 3TL H2 H N N 88 3TL HO1 H N N 89 3TL H1 H N N 90 3TL HN1 H N N 91 3TL H31 H N N 92 3TL H32 H N N 93 3TL H5 H N N 94 3TL H9 H N N 95 3TL H6 H N N 96 3TL H8 H N N 97 3TL H7 H N N 98 3TL HN51 H N N 99 3TL H51 H N N 100 3TL H52 H N N 101 3TL HO51 H N N 102 3TL H531 H N N 103 3TL H532 H N N 104 3TL H55 H N N 105 3TL H59 H N N 106 3TL H56 H N N 107 3TL H58 H N N 108 3TL H57 H N N 109 3TL HN52 H N N 110 3TL H60 H N N 111 3TL H62 H N N 112 3TL HG61 H N N 113 3TL HG62 H N N 114 3TL HG63 H N N 115 3TL HG51 H N N 116 3TL HG52 H N N 117 3TL HG53 H N N 118 3TL HN54 H N N 119 3TL H68 H N N 120 3TL H701 H N N 121 3TL H702 H N N 122 3TL H703 H N N 123 3TL HA51 H N N 124 3TL HA52 H N N 125 3TL H63 H N N 126 3TL H64 H N N 127 3TL H65 H N N 128 3TL H66 H N N 129 3TL H67 H N N 130 ALA N N N N 131 ALA CA C N S 132 ALA C C N N 133 ALA O O N N 134 ALA CB C N N 135 ALA OXT O N N 136 ALA H H N N 137 ALA H2 H N N 138 ALA HA H N N 139 ALA HB1 H N N 140 ALA HB2 H N N 141 ALA HB3 H N N 142 ALA HXT H N N 143 ARG N N N N 144 ARG CA C N S 145 ARG C C N N 146 ARG O O N N 147 ARG CB C N N 148 ARG CG C N N 149 ARG CD C N N 150 ARG NE N N N 151 ARG CZ C N N 152 ARG NH1 N N N 153 ARG NH2 N N N 154 ARG OXT O N N 155 ARG H H N N 156 ARG H2 H N N 157 ARG HA H N N 158 ARG HB2 H N N 159 ARG HB3 H N N 160 ARG HG2 H N N 161 ARG HG3 H N N 162 ARG HD2 H N N 163 ARG HD3 H N N 164 ARG HE H N N 165 ARG HH11 H N N 166 ARG HH12 H N N 167 ARG HH21 H N N 168 ARG HH22 H N N 169 ARG HXT H N N 170 ASN N N N N 171 ASN CA C N S 172 ASN C C N N 173 ASN O O N N 174 ASN CB C N N 175 ASN CG C N N 176 ASN OD1 O N N 177 ASN ND2 N N N 178 ASN OXT O N N 179 ASN H H N N 180 ASN H2 H N N 181 ASN HA H N N 182 ASN HB2 H N N 183 ASN HB3 H N N 184 ASN HD21 H N N 185 ASN HD22 H N N 186 ASN HXT H N N 187 ASP N N N N 188 ASP CA C N S 189 ASP C C N N 190 ASP O O N N 191 ASP CB C N N 192 ASP CG C N N 193 ASP OD1 O N N 194 ASP OD2 O N N 195 ASP OXT O N N 196 ASP H H N N 197 ASP H2 H N N 198 ASP HA H N N 199 ASP HB2 H N N 200 ASP HB3 H N N 201 ASP HD2 H N N 202 ASP HXT H N N 203 CME N N N N 204 CME CA C N R 205 CME CB C N N 206 CME SG S N N 207 CME SD S N N 208 CME CE C N N 209 CME CZ C N N 210 CME OH O N N 211 CME C C N N 212 CME O O N N 213 CME OXT O N N 214 CME H H N N 215 CME H2 H N N 216 CME HA H N N 217 CME HB2 H N N 218 CME HB3 H N N 219 CME HE2 H N N 220 CME HE3 H N N 221 CME HZ2 H N N 222 CME HZ3 H N N 223 CME HH H N N 224 CME HXT H N N 225 CYS N N N N 226 CYS CA C N R 227 CYS C C N N 228 CYS O O N N 229 CYS CB C N N 230 CYS SG S N N 231 CYS OXT O N N 232 CYS H H N N 233 CYS H2 H N N 234 CYS HA H N N 235 CYS HB2 H N N 236 CYS HB3 H N N 237 CYS HG H N N 238 CYS HXT H N N 239 GLN N N N N 240 GLN CA C N S 241 GLN C C N N 242 GLN O O N N 243 GLN CB C N N 244 GLN CG C N N 245 GLN CD C N N 246 GLN OE1 O N N 247 GLN NE2 N N N 248 GLN OXT O N N 249 GLN H H N N 250 GLN H2 H N N 251 GLN HA H N N 252 GLN HB2 H N N 253 GLN HB3 H N N 254 GLN HG2 H N N 255 GLN HG3 H N N 256 GLN HE21 H N N 257 GLN HE22 H N N 258 GLN HXT H N N 259 GLU N N N N 260 GLU CA C N S 261 GLU C C N N 262 GLU O O N N 263 GLU CB C N N 264 GLU CG C N N 265 GLU CD C N N 266 GLU OE1 O N N 267 GLU OE2 O N N 268 GLU OXT O N N 269 GLU H H N N 270 GLU H2 H N N 271 GLU HA H N N 272 GLU HB2 H N N 273 GLU HB3 H N N 274 GLU HG2 H N N 275 GLU HG3 H N N 276 GLU HE2 H N N 277 GLU HXT H N N 278 GLY N N N N 279 GLY CA C N N 280 GLY C C N N 281 GLY O O N N 282 GLY OXT O N N 283 GLY H H N N 284 GLY H2 H N N 285 GLY HA2 H N N 286 GLY HA3 H N N 287 GLY HXT H N N 288 HIS N N N N 289 HIS CA C N S 290 HIS C C N N 291 HIS O O N N 292 HIS CB C N N 293 HIS CG C Y N 294 HIS ND1 N Y N 295 HIS CD2 C Y N 296 HIS CE1 C Y N 297 HIS NE2 N Y N 298 HIS OXT O N N 299 HIS H H N N 300 HIS H2 H N N 301 HIS HA H N N 302 HIS HB2 H N N 303 HIS HB3 H N N 304 HIS HD1 H N N 305 HIS HD2 H N N 306 HIS HE1 H N N 307 HIS HE2 H N N 308 HIS HXT H N N 309 HOH O O N N 310 HOH H1 H N N 311 HOH H2 H N N 312 ILE N N N N 313 ILE CA C N S 314 ILE C C N N 315 ILE O O N N 316 ILE CB C N S 317 ILE CG1 C N N 318 ILE CG2 C N N 319 ILE CD1 C N N 320 ILE OXT O N N 321 ILE H H N N 322 ILE H2 H N N 323 ILE HA H N N 324 ILE HB H N N 325 ILE HG12 H N N 326 ILE HG13 H N N 327 ILE HG21 H N N 328 ILE HG22 H N N 329 ILE HG23 H N N 330 ILE HD11 H N N 331 ILE HD12 H N N 332 ILE HD13 H N N 333 ILE HXT H N N 334 LEU N N N N 335 LEU CA C N S 336 LEU C C N N 337 LEU O O N N 338 LEU CB C N N 339 LEU CG C N N 340 LEU CD1 C N N 341 LEU CD2 C N N 342 LEU OXT O N N 343 LEU H H N N 344 LEU H2 H N N 345 LEU HA H N N 346 LEU HB2 H N N 347 LEU HB3 H N N 348 LEU HG H N N 349 LEU HD11 H N N 350 LEU HD12 H N N 351 LEU HD13 H N N 352 LEU HD21 H N N 353 LEU HD22 H N N 354 LEU HD23 H N N 355 LEU HXT H N N 356 LYS N N N N 357 LYS CA C N S 358 LYS C C N N 359 LYS O O N N 360 LYS CB C N N 361 LYS CG C N N 362 LYS CD C N N 363 LYS CE C N N 364 LYS NZ N N N 365 LYS OXT O N N 366 LYS H H N N 367 LYS H2 H N N 368 LYS HA H N N 369 LYS HB2 H N N 370 LYS HB3 H N N 371 LYS HG2 H N N 372 LYS HG3 H N N 373 LYS HD2 H N N 374 LYS HD3 H N N 375 LYS HE2 H N N 376 LYS HE3 H N N 377 LYS HZ1 H N N 378 LYS HZ2 H N N 379 LYS HZ3 H N N 380 LYS HXT H N N 381 MET N N N N 382 MET CA C N S 383 MET C C N N 384 MET O O N N 385 MET CB C N N 386 MET CG C N N 387 MET SD S N N 388 MET CE C N N 389 MET OXT O N N 390 MET H H N N 391 MET H2 H N N 392 MET HA H N N 393 MET HB2 H N N 394 MET HB3 H N N 395 MET HG2 H N N 396 MET HG3 H N N 397 MET HE1 H N N 398 MET HE2 H N N 399 MET HE3 H N N 400 MET HXT H N N 401 PHE N N N N 402 PHE CA C N S 403 PHE C C N N 404 PHE O O N N 405 PHE CB C N N 406 PHE CG C Y N 407 PHE CD1 C Y N 408 PHE CD2 C Y N 409 PHE CE1 C Y N 410 PHE CE2 C Y N 411 PHE CZ C Y N 412 PHE OXT O N N 413 PHE H H N N 414 PHE H2 H N N 415 PHE HA H N N 416 PHE HB2 H N N 417 PHE HB3 H N N 418 PHE HD1 H N N 419 PHE HD2 H N N 420 PHE HE1 H N N 421 PHE HE2 H N N 422 PHE HZ H N N 423 PHE HXT H N N 424 PRO N N N N 425 PRO CA C N S 426 PRO C C N N 427 PRO O O N N 428 PRO CB C N N 429 PRO CG C N N 430 PRO CD C N N 431 PRO OXT O N N 432 PRO H H N N 433 PRO HA H N N 434 PRO HB2 H N N 435 PRO HB3 H N N 436 PRO HG2 H N N 437 PRO HG3 H N N 438 PRO HD2 H N N 439 PRO HD3 H N N 440 PRO HXT H N N 441 SER N N N N 442 SER CA C N S 443 SER C C N N 444 SER O O N N 445 SER CB C N N 446 SER OG O N N 447 SER OXT O N N 448 SER H H N N 449 SER H2 H N N 450 SER HA H N N 451 SER HB2 H N N 452 SER HB3 H N N 453 SER HG H N N 454 SER HXT H N N 455 THR N N N N 456 THR CA C N S 457 THR C C N N 458 THR O O N N 459 THR CB C N R 460 THR OG1 O N N 461 THR CG2 C N N 462 THR OXT O N N 463 THR H H N N 464 THR H2 H N N 465 THR HA H N N 466 THR HB H N N 467 THR HG1 H N N 468 THR HG21 H N N 469 THR HG22 H N N 470 THR HG23 H N N 471 THR HXT H N N 472 TRP N N N N 473 TRP CA C N S 474 TRP C C N N 475 TRP O O N N 476 TRP CB C N N 477 TRP CG C Y N 478 TRP CD1 C Y N 479 TRP CD2 C Y N 480 TRP NE1 N Y N 481 TRP CE2 C Y N 482 TRP CE3 C Y N 483 TRP CZ2 C Y N 484 TRP CZ3 C Y N 485 TRP CH2 C Y N 486 TRP OXT O N N 487 TRP H H N N 488 TRP H2 H N N 489 TRP HA H N N 490 TRP HB2 H N N 491 TRP HB3 H N N 492 TRP HD1 H N N 493 TRP HE1 H N N 494 TRP HE3 H N N 495 TRP HZ2 H N N 496 TRP HZ3 H N N 497 TRP HH2 H N N 498 TRP HXT H N N 499 TYR N N N N 500 TYR CA C N S 501 TYR C C N N 502 TYR O O N N 503 TYR CB C N N 504 TYR CG C Y N 505 TYR CD1 C Y N 506 TYR CD2 C Y N 507 TYR CE1 C Y N 508 TYR CE2 C Y N 509 TYR CZ C Y N 510 TYR OH O N N 511 TYR OXT O N N 512 TYR H H N N 513 TYR H2 H N N 514 TYR HA H N N 515 TYR HB2 H N N 516 TYR HB3 H N N 517 TYR HD1 H N N 518 TYR HD2 H N N 519 TYR HE1 H N N 520 TYR HE2 H N N 521 TYR HH H N N 522 TYR HXT H N N 523 VAL N N N N 524 VAL CA C N S 525 VAL C C N N 526 VAL O O N N 527 VAL CB C N N 528 VAL CG1 C N N 529 VAL CG2 C N N 530 VAL OXT O N N 531 VAL H H N N 532 VAL H2 H N N 533 VAL HA H N N 534 VAL HB H N N 535 VAL HG11 H N N 536 VAL HG12 H N N 537 VAL HG13 H N N 538 VAL HG21 H N N 539 VAL HG22 H N N 540 VAL HG23 H N N 541 VAL HXT H N N 542 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3TL C31 O8 doub N N 1 3TL C31 O9 sing N N 2 3TL C31 N4 sing N N 3 3TL O9 CA sing N N 4 3TL CA C sing N N 5 3TL CA HA1 sing N N 6 3TL CA HA2 sing N N 7 3TL C C13 doub Y N 8 3TL C C17 sing Y N 9 3TL C13 C14 sing Y N 10 3TL C13 H13 sing N N 11 3TL C14 C15 doub Y N 12 3TL C14 H14 sing N N 13 3TL C15 C16 sing Y N 14 3TL C15 H15 sing N N 15 3TL C16 C17 doub Y N 16 3TL C16 H16 sing N N 17 3TL C17 H17 sing N N 18 3TL N4 C18 sing N N 19 3TL N4 HN4 sing N N 20 3TL C18 C19 sing N N 21 3TL C18 C20 sing N N 22 3TL C18 H18 sing N N 23 3TL C19 O4 doub N N 24 3TL C19 N2 sing N N 25 3TL C20 H201 sing N N 26 3TL C20 H202 sing N N 27 3TL C20 H203 sing N N 28 3TL N2 C10 sing N N 29 3TL N2 HN2 sing N N 30 3TL C10 C11 sing N N 31 3TL C10 C12 sing N N 32 3TL C10 H10 sing N N 33 3TL C11 O2 doub N N 34 3TL C11 N1 sing N N 35 3TL C12 CG2 sing N N 36 3TL C12 CG1 sing N N 37 3TL C12 H12 sing N N 38 3TL CG2 HG21 sing N N 39 3TL CG2 HG22 sing N N 40 3TL CG2 HG23 sing N N 41 3TL CG1 HG11 sing N N 42 3TL CG1 HG12 sing N N 43 3TL CG1 HG13 sing N N 44 3TL C2 O1 sing N N 45 3TL C2 C1 sing N N 46 3TL C2 H2 sing N N 47 3TL C2 C52 sing N N 48 3TL O1 HO1 sing N N 49 3TL C1 N1 sing N N 50 3TL C1 C3 sing N N 51 3TL C1 H1 sing N N 52 3TL N1 HN1 sing N N 53 3TL C3 C4 sing N N 54 3TL C3 H31 sing N N 55 3TL C3 H32 sing N N 56 3TL C4 C5 doub Y N 57 3TL C4 C9 sing Y N 58 3TL C5 C6 sing Y N 59 3TL C5 H5 sing N N 60 3TL C9 C8 doub Y N 61 3TL C9 H9 sing N N 62 3TL C6 C7 doub Y N 63 3TL C6 H6 sing N N 64 3TL C8 C7 sing Y N 65 3TL C8 H8 sing N N 66 3TL C7 H7 sing N N 67 3TL N51 C51 sing N N 68 3TL N51 HN51 sing N N 69 3TL N51 C61 sing N N 70 3TL C51 C52 sing N N 71 3TL C51 C53 sing N N 72 3TL C51 H51 sing N N 73 3TL C52 O51 sing N N 74 3TL C52 H52 sing N N 75 3TL O51 HO51 sing N N 76 3TL C53 C54 sing N N 77 3TL C53 H531 sing N N 78 3TL C53 H532 sing N N 79 3TL C54 C55 doub Y N 80 3TL C54 C59 sing Y N 81 3TL C55 C56 sing Y N 82 3TL C55 H55 sing N N 83 3TL C59 C58 doub Y N 84 3TL C59 H59 sing N N 85 3TL C56 C57 doub Y N 86 3TL C56 H56 sing N N 87 3TL C58 C57 sing Y N 88 3TL C58 H58 sing N N 89 3TL C57 H57 sing N N 90 3TL N52 C60 sing N N 91 3TL N52 HN52 sing N N 92 3TL N52 C69 sing N N 93 3TL C60 C61 sing N N 94 3TL C60 C62 sing N N 95 3TL C60 H60 sing N N 96 3TL C61 O52 doub N N 97 3TL C62 CG6 sing N N 98 3TL C62 CG5 sing N N 99 3TL C62 H62 sing N N 100 3TL CG6 HG61 sing N N 101 3TL CG6 HG62 sing N N 102 3TL CG6 HG63 sing N N 103 3TL CG5 HG51 sing N N 104 3TL CG5 HG52 sing N N 105 3TL CG5 HG53 sing N N 106 3TL N54 C68 sing N N 107 3TL N54 HN54 sing N N 108 3TL N54 C81 sing N N 109 3TL C68 C69 sing N N 110 3TL C68 C70 sing N N 111 3TL C68 H68 sing N N 112 3TL C69 O54 doub N N 113 3TL C70 H701 sing N N 114 3TL C70 H702 sing N N 115 3TL C70 H703 sing N N 116 3TL C81 O58 doub N N 117 3TL C81 O59 sing N N 118 3TL O59 CA5 sing N N 119 3TL CA5 C50 sing N N 120 3TL CA5 HA51 sing N N 121 3TL CA5 HA52 sing N N 122 3TL C50 C63 doub Y N 123 3TL C50 C67 sing Y N 124 3TL C63 C64 sing Y N 125 3TL C63 H63 sing N N 126 3TL C64 C65 doub Y N 127 3TL C64 H64 sing N N 128 3TL C65 C66 sing Y N 129 3TL C65 H65 sing N N 130 3TL C66 C67 doub Y N 131 3TL C66 H66 sing N N 132 3TL C67 H67 sing N N 133 ALA N CA sing N N 134 ALA N H sing N N 135 ALA N H2 sing N N 136 ALA CA C sing N N 137 ALA CA CB sing N N 138 ALA CA HA sing N N 139 ALA C O doub N N 140 ALA C OXT sing N N 141 ALA CB HB1 sing N N 142 ALA CB HB2 sing N N 143 ALA CB HB3 sing N N 144 ALA OXT HXT sing N N 145 ARG N CA sing N N 146 ARG N H sing N N 147 ARG N H2 sing N N 148 ARG CA C sing N N 149 ARG CA CB sing N N 150 ARG CA HA sing N N 151 ARG C O doub N N 152 ARG C OXT sing N N 153 ARG CB CG sing N N 154 ARG CB HB2 sing N N 155 ARG CB HB3 sing N N 156 ARG CG CD sing N N 157 ARG CG HG2 sing N N 158 ARG CG HG3 sing N N 159 ARG CD NE sing N N 160 ARG CD HD2 sing N N 161 ARG CD HD3 sing N N 162 ARG NE CZ sing N N 163 ARG NE HE sing N N 164 ARG CZ NH1 sing N N 165 ARG CZ NH2 doub N N 166 ARG NH1 HH11 sing N N 167 ARG NH1 HH12 sing N N 168 ARG NH2 HH21 sing N N 169 ARG NH2 HH22 sing N N 170 ARG OXT HXT sing N N 171 ASN N CA sing N N 172 ASN N H sing N N 173 ASN N H2 sing N N 174 ASN CA C sing N N 175 ASN CA CB sing N N 176 ASN CA HA sing N N 177 ASN C O doub N N 178 ASN C OXT sing N N 179 ASN CB CG sing N N 180 ASN CB HB2 sing N N 181 ASN CB HB3 sing N N 182 ASN CG OD1 doub N N 183 ASN CG ND2 sing N N 184 ASN ND2 HD21 sing N N 185 ASN ND2 HD22 sing N N 186 ASN OXT HXT sing N N 187 ASP N CA sing N N 188 ASP N H sing N N 189 ASP N H2 sing N N 190 ASP CA C sing N N 191 ASP CA CB sing N N 192 ASP CA HA sing N N 193 ASP C O doub N N 194 ASP C OXT sing N N 195 ASP CB CG sing N N 196 ASP CB HB2 sing N N 197 ASP CB HB3 sing N N 198 ASP CG OD1 doub N N 199 ASP CG OD2 sing N N 200 ASP OD2 HD2 sing N N 201 ASP OXT HXT sing N N 202 CME N CA sing N N 203 CME N H sing N N 204 CME N H2 sing N N 205 CME CA CB sing N N 206 CME CA C sing N N 207 CME CA HA sing N N 208 CME CB SG sing N N 209 CME CB HB2 sing N N 210 CME CB HB3 sing N N 211 CME SG SD sing N N 212 CME SD CE sing N N 213 CME CE CZ sing N N 214 CME CE HE2 sing N N 215 CME CE HE3 sing N N 216 CME CZ OH sing N N 217 CME CZ HZ2 sing N N 218 CME CZ HZ3 sing N N 219 CME OH HH sing N N 220 CME C O doub N N 221 CME C OXT sing N N 222 CME OXT HXT sing N N 223 CYS N CA sing N N 224 CYS N H sing N N 225 CYS N H2 sing N N 226 CYS CA C sing N N 227 CYS CA CB sing N N 228 CYS CA HA sing N N 229 CYS C O doub N N 230 CYS C OXT sing N N 231 CYS CB SG sing N N 232 CYS CB HB2 sing N N 233 CYS CB HB3 sing N N 234 CYS SG HG sing N N 235 CYS OXT HXT sing N N 236 GLN N CA sing N N 237 GLN N H sing N N 238 GLN N H2 sing N N 239 GLN CA C sing N N 240 GLN CA CB sing N N 241 GLN CA HA sing N N 242 GLN C O doub N N 243 GLN C OXT sing N N 244 GLN CB CG sing N N 245 GLN CB HB2 sing N N 246 GLN CB HB3 sing N N 247 GLN CG CD sing N N 248 GLN CG HG2 sing N N 249 GLN CG HG3 sing N N 250 GLN CD OE1 doub N N 251 GLN CD NE2 sing N N 252 GLN NE2 HE21 sing N N 253 GLN NE2 HE22 sing N N 254 GLN OXT HXT sing N N 255 GLU N CA sing N N 256 GLU N H sing N N 257 GLU N H2 sing N N 258 GLU CA C sing N N 259 GLU CA CB sing N N 260 GLU CA HA sing N N 261 GLU C O doub N N 262 GLU C OXT sing N N 263 GLU CB CG sing N N 264 GLU CB HB2 sing N N 265 GLU CB HB3 sing N N 266 GLU CG CD sing N N 267 GLU CG HG2 sing N N 268 GLU CG HG3 sing N N 269 GLU CD OE1 doub N N 270 GLU CD OE2 sing N N 271 GLU OE2 HE2 sing N N 272 GLU OXT HXT sing N N 273 GLY N CA sing N N 274 GLY N H sing N N 275 GLY N H2 sing N N 276 GLY CA C sing N N 277 GLY CA HA2 sing N N 278 GLY CA HA3 sing N N 279 GLY C O doub N N 280 GLY C OXT sing N N 281 GLY OXT HXT sing N N 282 HIS N CA sing N N 283 HIS N H sing N N 284 HIS N H2 sing N N 285 HIS CA C sing N N 286 HIS CA CB sing N N 287 HIS CA HA sing N N 288 HIS C O doub N N 289 HIS C OXT sing N N 290 HIS CB CG sing N N 291 HIS CB HB2 sing N N 292 HIS CB HB3 sing N N 293 HIS CG ND1 sing Y N 294 HIS CG CD2 doub Y N 295 HIS ND1 CE1 doub Y N 296 HIS ND1 HD1 sing N N 297 HIS CD2 NE2 sing Y N 298 HIS CD2 HD2 sing N N 299 HIS CE1 NE2 sing Y N 300 HIS CE1 HE1 sing N N 301 HIS NE2 HE2 sing N N 302 HIS OXT HXT sing N N 303 HOH O H1 sing N N 304 HOH O H2 sing N N 305 ILE N CA sing N N 306 ILE N H sing N N 307 ILE N H2 sing N N 308 ILE CA C sing N N 309 ILE CA CB sing N N 310 ILE CA HA sing N N 311 ILE C O doub N N 312 ILE C OXT sing N N 313 ILE CB CG1 sing N N 314 ILE CB CG2 sing N N 315 ILE CB HB sing N N 316 ILE CG1 CD1 sing N N 317 ILE CG1 HG12 sing N N 318 ILE CG1 HG13 sing N N 319 ILE CG2 HG21 sing N N 320 ILE CG2 HG22 sing N N 321 ILE CG2 HG23 sing N N 322 ILE CD1 HD11 sing N N 323 ILE CD1 HD12 sing N N 324 ILE CD1 HD13 sing N N 325 ILE OXT HXT sing N N 326 LEU N CA sing N N 327 LEU N H sing N N 328 LEU N H2 sing N N 329 LEU CA C sing N N 330 LEU CA CB sing N N 331 LEU CA HA sing N N 332 LEU C O doub N N 333 LEU C OXT sing N N 334 LEU CB CG sing N N 335 LEU CB HB2 sing N N 336 LEU CB HB3 sing N N 337 LEU CG CD1 sing N N 338 LEU CG CD2 sing N N 339 LEU CG HG sing N N 340 LEU CD1 HD11 sing N N 341 LEU CD1 HD12 sing N N 342 LEU CD1 HD13 sing N N 343 LEU CD2 HD21 sing N N 344 LEU CD2 HD22 sing N N 345 LEU CD2 HD23 sing N N 346 LEU OXT HXT sing N N 347 LYS N CA sing N N 348 LYS N H sing N N 349 LYS N H2 sing N N 350 LYS CA C sing N N 351 LYS CA CB sing N N 352 LYS CA HA sing N N 353 LYS C O doub N N 354 LYS C OXT sing N N 355 LYS CB CG sing N N 356 LYS CB HB2 sing N N 357 LYS CB HB3 sing N N 358 LYS CG CD sing N N 359 LYS CG HG2 sing N N 360 LYS CG HG3 sing N N 361 LYS CD CE sing N N 362 LYS CD HD2 sing N N 363 LYS CD HD3 sing N N 364 LYS CE NZ sing N N 365 LYS CE HE2 sing N N 366 LYS CE HE3 sing N N 367 LYS NZ HZ1 sing N N 368 LYS NZ HZ2 sing N N 369 LYS NZ HZ3 sing N N 370 LYS OXT HXT sing N N 371 MET N CA sing N N 372 MET N H sing N N 373 MET N H2 sing N N 374 MET CA C sing N N 375 MET CA CB sing N N 376 MET CA HA sing N N 377 MET C O doub N N 378 MET C OXT sing N N 379 MET CB CG sing N N 380 MET CB HB2 sing N N 381 MET CB HB3 sing N N 382 MET CG SD sing N N 383 MET CG HG2 sing N N 384 MET CG HG3 sing N N 385 MET SD CE sing N N 386 MET CE HE1 sing N N 387 MET CE HE2 sing N N 388 MET CE HE3 sing N N 389 MET OXT HXT sing N N 390 PHE N CA sing N N 391 PHE N H sing N N 392 PHE N H2 sing N N 393 PHE CA C sing N N 394 PHE CA CB sing N N 395 PHE CA HA sing N N 396 PHE C O doub N N 397 PHE C OXT sing N N 398 PHE CB CG sing N N 399 PHE CB HB2 sing N N 400 PHE CB HB3 sing N N 401 PHE CG CD1 doub Y N 402 PHE CG CD2 sing Y N 403 PHE CD1 CE1 sing Y N 404 PHE CD1 HD1 sing N N 405 PHE CD2 CE2 doub Y N 406 PHE CD2 HD2 sing N N 407 PHE CE1 CZ doub Y N 408 PHE CE1 HE1 sing N N 409 PHE CE2 CZ sing Y N 410 PHE CE2 HE2 sing N N 411 PHE CZ HZ sing N N 412 PHE OXT HXT sing N N 413 PRO N CA sing N N 414 PRO N CD sing N N 415 PRO N H sing N N 416 PRO CA C sing N N 417 PRO CA CB sing N N 418 PRO CA HA sing N N 419 PRO C O doub N N 420 PRO C OXT sing N N 421 PRO CB CG sing N N 422 PRO CB HB2 sing N N 423 PRO CB HB3 sing N N 424 PRO CG CD sing N N 425 PRO CG HG2 sing N N 426 PRO CG HG3 sing N N 427 PRO CD HD2 sing N N 428 PRO CD HD3 sing N N 429 PRO OXT HXT sing N N 430 SER N CA sing N N 431 SER N H sing N N 432 SER N H2 sing N N 433 SER CA C sing N N 434 SER CA CB sing N N 435 SER CA HA sing N N 436 SER C O doub N N 437 SER C OXT sing N N 438 SER CB OG sing N N 439 SER CB HB2 sing N N 440 SER CB HB3 sing N N 441 SER OG HG sing N N 442 SER OXT HXT sing N N 443 THR N CA sing N N 444 THR N H sing N N 445 THR N H2 sing N N 446 THR CA C sing N N 447 THR CA CB sing N N 448 THR CA HA sing N N 449 THR C O doub N N 450 THR C OXT sing N N 451 THR CB OG1 sing N N 452 THR CB CG2 sing N N 453 THR CB HB sing N N 454 THR OG1 HG1 sing N N 455 THR CG2 HG21 sing N N 456 THR CG2 HG22 sing N N 457 THR CG2 HG23 sing N N 458 THR OXT HXT sing N N 459 TRP N CA sing N N 460 TRP N H sing N N 461 TRP N H2 sing N N 462 TRP CA C sing N N 463 TRP CA CB sing N N 464 TRP CA HA sing N N 465 TRP C O doub N N 466 TRP C OXT sing N N 467 TRP CB CG sing N N 468 TRP CB HB2 sing N N 469 TRP CB HB3 sing N N 470 TRP CG CD1 doub Y N 471 TRP CG CD2 sing Y N 472 TRP CD1 NE1 sing Y N 473 TRP CD1 HD1 sing N N 474 TRP CD2 CE2 doub Y N 475 TRP CD2 CE3 sing Y N 476 TRP NE1 CE2 sing Y N 477 TRP NE1 HE1 sing N N 478 TRP CE2 CZ2 sing Y N 479 TRP CE3 CZ3 doub Y N 480 TRP CE3 HE3 sing N N 481 TRP CZ2 CH2 doub Y N 482 TRP CZ2 HZ2 sing N N 483 TRP CZ3 CH2 sing Y N 484 TRP CZ3 HZ3 sing N N 485 TRP CH2 HH2 sing N N 486 TRP OXT HXT sing N N 487 TYR N CA sing N N 488 TYR N H sing N N 489 TYR N H2 sing N N 490 TYR CA C sing N N 491 TYR CA CB sing N N 492 TYR CA HA sing N N 493 TYR C O doub N N 494 TYR C OXT sing N N 495 TYR CB CG sing N N 496 TYR CB HB2 sing N N 497 TYR CB HB3 sing N N 498 TYR CG CD1 doub Y N 499 TYR CG CD2 sing Y N 500 TYR CD1 CE1 sing Y N 501 TYR CD1 HD1 sing N N 502 TYR CD2 CE2 doub Y N 503 TYR CD2 HD2 sing N N 504 TYR CE1 CZ doub Y N 505 TYR CE1 HE1 sing N N 506 TYR CE2 CZ sing Y N 507 TYR CE2 HE2 sing N N 508 TYR CZ OH sing N N 509 TYR OH HH sing N N 510 TYR OXT HXT sing N N 511 VAL N CA sing N N 512 VAL N H sing N N 513 VAL N H2 sing N N 514 VAL CA C sing N N 515 VAL CA CB sing N N 516 VAL CA HA sing N N 517 VAL C O doub N N 518 VAL C OXT sing N N 519 VAL CB CG1 sing N N 520 VAL CB CG2 sing N N 521 VAL CB HB sing N N 522 VAL CG1 HG11 sing N N 523 VAL CG1 HG12 sing N N 524 VAL CG1 HG13 sing N N 525 VAL CG2 HG21 sing N N 526 VAL CG2 HG22 sing N N 527 VAL CG2 HG23 sing N N 528 VAL OXT HXT sing N N 529 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'Crystal Structure of the multi-drug resistant mutant subtype B HIV protease complexed with TL-3 inhibitor' # _atom_sites.entry_id 2P3B _atom_sites.fract_transf_matrix[1][1] 0.015832 _atom_sites.fract_transf_matrix[1][2] 0.009140 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018281 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011988 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_