HEADER OXIDOREDUCTASE 09-MAR-07 2P3X TITLE CRYSTAL STRUCTURE OF GRENACHE (VITIS VINIFERA) POLYPHENOL OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPHENOL OXIDASE, CHLOROPLAST; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POLYPHENOL OXIDASE; COMPND 5 SYNONYM: PPO, CATECHOL OXIDASE; COMPND 6 EC: 1.10.3.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VITIS VINIFERA; SOURCE 3 ORGANISM_TAXID: 29760; SOURCE 4 OTHER_DETAILS: GRAPE BERRIES KEYWDS POLYPHENOL OXIDASE, GRENACHE GRAPES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.REYES GRAJEDA,V.M.VIRADOR,A.BLANCO-LABRA,E.MENDIOLA-OLAYA, AUTHOR 2 G.M.SMITH,A.MORENO,J.R.WHITAKER REVDAT 4 30-AUG-23 2P3X 1 REMARK LINK REVDAT 3 16-MAR-10 2P3X 1 JRNL REVDAT 2 24-FEB-09 2P3X 1 VERSN REVDAT 1 11-MAR-08 2P3X 0 JRNL AUTH V.M.VIRADOR,J.P.REYES GRAJEDA,A.BLANCO-LABRA, JRNL AUTH 2 E.MENDIOLA-OLAYA,G.M.SMITH,A.MORENO,J.R.WHITAKER JRNL TITL CLONING, SEQUENCING, PURIFICATION, AND CRYSTAL STRUCTURE OF JRNL TITL 2 GRENACHE (VITIS VINIFERA) POLYPHENOL OXIDASE. JRNL REF J.AGRIC.FOOD CHEM. V. 58 1189 2010 JRNL REFN ISSN 0021-8561 JRNL PMID 20039636 JRNL DOI 10.1021/JF902939Q REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2713 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 128 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2803 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3833 ; 2.545 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ;18.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;37.535 ;24.341 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 435 ;20.474 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.277 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2186 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1291 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1828 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.010 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1758 ; 1.313 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2778 ; 2.153 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1239 ; 3.270 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1055 ; 4.867 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR. REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26382 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.960 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.41 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: POLYPHENOL OXIDASE OF SWEET POTATO (1BT1) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE PH 5.6, 30% W/V POLYETHYLENE GLYCOL 4, REMARK 280 000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.38500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.01500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.38500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.40000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.01500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.38500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.40000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.01500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.38500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 339 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 13 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 THR A 23 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 THR A 23 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 GLY A 42 C - N - CA ANGL. DEV. = -14.2 DEGREES REMARK 500 VAL A 107 CG1 - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 MET A 150 CG - SD - CE ANGL. DEV. = 10.7 DEGREES REMARK 500 LYS A 167 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 174 C - N - CA ANGL. DEV. = 19.1 DEGREES REMARK 500 PRO A 174 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO A 174 N - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 PRO A 175 C - N - CA ANGL. DEV. = -12.0 DEGREES REMARK 500 PHE A 269 CA - C - N ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 277 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 107.10 122.93 REMARK 500 ASP A 74 -48.34 -29.16 REMARK 500 PHE A 116 -66.52 -22.43 REMARK 500 TYR A 122 -70.54 -20.35 REMARK 500 ARG A 126 -62.85 -22.90 REMARK 500 ASP A 133 60.41 33.84 REMARK 500 MET A 150 48.26 -88.88 REMARK 500 SER A 161 151.70 177.42 REMARK 500 LYS A 167 0.94 50.78 REMARK 500 PRO A 174 -7.45 -37.69 REMARK 500 VAL A 207 -67.49 -109.88 REMARK 500 ASP A 250 -155.39 29.90 REMARK 500 SER A 253 37.74 72.08 REMARK 500 ARG A 290 35.03 135.49 REMARK 500 LYS A 291 106.66 29.58 REMARK 500 ASP A 292 120.30 31.18 REMARK 500 SER A 318 -57.78 -24.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 12 THR A 13 73.26 REMARK 500 PRO A 22 THR A 23 -68.60 REMARK 500 GLY A 99 TYR A 100 -146.07 REMARK 500 PRO A 115 PHE A 116 141.49 REMARK 500 LEU A 121 TYR A 122 144.79 REMARK 500 GLU A 125 ARG A 126 137.70 REMARK 500 SER A 158 SER A 159 -137.50 REMARK 500 SER A 159 PRO A 160 144.10 REMARK 500 GLU A 166 LYS A 167 77.59 REMARK 500 PRO A 174 PRO A 175 146.67 REMARK 500 ASP A 250 LYS A 251 32.07 REMARK 500 PHE A 269 GLY A 270 72.57 REMARK 500 LYS A 291 ASP A 292 63.64 REMARK 500 LEU A 338 PRO A 339 145.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 C2O A 340 CU2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 C2O A 340 O1 113.5 REMARK 620 3 HIS A 108 NE2 119.9 86.9 REMARK 620 4 HIS A 117 NE2 113.0 116.6 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 C2O A 340 CU3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 239 NE2 REMARK 620 2 C2O A 340 O1 79.3 REMARK 620 3 HIS A 243 NE2 100.1 106.6 REMARK 620 4 HIS A 272 NE2 110.9 122.5 125.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2O A 340 DBREF 2P3X A 1 339 UNP P43311 PPO_VITVI 104 442 SEQRES 1 A 339 ALA PRO ILE GLN ALA PRO ASP ILE SER LYS CYS GLY THR SEQRES 2 A 339 ALA THR VAL PRO ASP GLY VAL THR PRO THR ASN CYS CYS SEQRES 3 A 339 PRO PRO VAL THR THR LYS ILE ILE ASP PHE GLN LEU PRO SEQRES 4 A 339 SER SER GLY SER PRO MET ARG THR ARG PRO ALA ALA HIS SEQRES 5 A 339 LEU VAL SER LYS GLU TYR LEU ALA LYS TYR LYS LYS ALA SEQRES 6 A 339 ILE GLU LEU GLN LYS ALA LEU PRO ASP ASP ASP PRO ARG SEQRES 7 A 339 SER PHE LYS GLN GLN ALA ASN VAL HIS CYS THR TYR CYS SEQRES 8 A 339 GLN GLY ALA TYR ASP GLN VAL GLY TYR THR ASP LEU GLU SEQRES 9 A 339 LEU GLN VAL HIS ALA SER TRP LEU PHE LEU PRO PHE HIS SEQRES 10 A 339 ARG TYR TYR LEU TYR PHE ASN GLU ARG ILE LEU ALA LYS SEQRES 11 A 339 LEU ILE ASP ASP PRO THR PHE ALA LEU PRO TYR TRP ALA SEQRES 12 A 339 TRP ASP ASN PRO ASP GLY MET TYR MET PRO THR ILE TYR SEQRES 13 A 339 ALA SER SER PRO SER SER LEU TYR ASP GLU LYS ARG ASN SEQRES 14 A 339 ALA LYS HIS LEU PRO PRO THR VAL ILE ASP LEU ASP TYR SEQRES 15 A 339 ASP GLY THR GLU PRO THR ILE PRO ASP ASP GLU LEU LYS SEQRES 16 A 339 THR ASP ASN LEU ALA ILE MET TYR LYS GLN ILE VAL SER SEQRES 17 A 339 GLY ALA THR THR PRO LYS LEU PHE LEU GLY TYR PRO TYR SEQRES 18 A 339 ARG ALA GLY ASP ALA ILE ASP PRO GLY ALA GLY THR LEU SEQRES 19 A 339 GLU HIS ALA PRO HIS ASN ILE VAL HIS LYS TRP THR GLY SEQRES 20 A 339 LEU ALA ASP LYS PRO SER GLU ASP MET GLY ASN PHE TYR SEQRES 21 A 339 THR ALA GLY ARG ASP PRO ILE PHE PHE GLY HIS HIS ALA SEQRES 22 A 339 ASN VAL ASP ARG MET TRP ASN ILE TRP LYS THR ILE GLY SEQRES 23 A 339 GLY LYS ASN ARG LYS ASP PHE THR ASP THR ASP TRP LEU SEQRES 24 A 339 ASP ALA THR PHE VAL PHE TYR ASP GLU ASN LYS GLN LEU SEQRES 25 A 339 VAL LYS VAL LYS VAL SER ASP CYS VAL ASP THR SER LYS SEQRES 26 A 339 LEU ARG TYR GLN TYR GLN ASP ILE PRO ILE PRO TRP LEU SEQRES 27 A 339 PRO HET C2O A 340 3 HETNAM C2O CU-O-CU LINKAGE FORMUL 2 C2O CU2 O FORMUL 3 HOH *128(H2 O) HELIX 1 1 ASP A 7 CYS A 11 5 5 HELIX 2 2 ALA A 50 VAL A 54 5 5 HELIX 3 3 SER A 55 ALA A 71 1 17 HELIX 4 4 SER A 79 GLN A 92 1 14 HELIX 5 5 LEU A 112 ILE A 132 1 21 HELIX 6 6 ASN A 146 MET A 150 5 5 HELIX 7 7 PRO A 153 SER A 158 1 6 HELIX 8 8 ASN A 169 LEU A 173 5 5 HELIX 9 9 PRO A 190 VAL A 207 1 18 HELIX 10 10 THR A 212 GLY A 218 1 7 HELIX 11 11 GLY A 232 ALA A 237 1 6 HELIX 12 12 PRO A 238 GLY A 247 1 10 HELIX 13 13 THR A 261 PRO A 266 5 6 HELIX 14 14 ILE A 267 LYS A 283 1 17 HELIX 15 15 ASP A 295 ASP A 300 1 6 HELIX 16 16 SER A 318 VAL A 321 5 4 SHEET 1 A 3 ILE A 33 ASP A 35 0 SHEET 2 A 3 LEU A 312 LYS A 316 1 O LEU A 312 N ILE A 34 SHEET 3 A 3 THR A 302 TYR A 306 -1 N PHE A 305 O VAL A 313 SHEET 1 B 2 ARG A 46 ARG A 48 0 SHEET 2 B 2 TYR A 328 TYR A 330 1 O GLN A 329 N ARG A 48 SSBOND 1 CYS A 11 CYS A 26 1555 1555 2.13 SSBOND 2 CYS A 25 CYS A 88 1555 1555 2.20 LINK SG CYS A 91 CE1 HIS A 108 1555 1555 1.82 LINK NE2 HIS A 87 CU2 C2O A 340 1555 1555 2.07 LINK NE2 HIS A 108 CU2 C2O A 340 1555 1555 2.16 LINK NE2 HIS A 117 CU2 C2O A 340 1555 1555 2.36 LINK NE2 HIS A 239 CU3 C2O A 340 1555 1555 2.04 LINK NE2 HIS A 243 CU3 C2O A 340 1555 1555 2.15 LINK NE2 HIS A 272 CU3 C2O A 340 1555 1555 2.02 CISPEP 1 ASP A 18 GLY A 19 0 -20.84 CISPEP 2 ALA A 237 PRO A 238 0 3.08 CISPEP 3 LYS A 251 PRO A 252 0 7.94 CISPEP 4 GLU A 254 ASP A 255 0 -9.94 CISPEP 5 GLY A 287 LYS A 288 0 -21.20 CISPEP 6 LYS A 288 ASN A 289 0 -5.85 CISPEP 7 ARG A 290 LYS A 291 0 22.22 SITE 1 AC1 8 HIS A 87 CYS A 91 HIS A 108 HIS A 117 SITE 2 AC1 8 HIS A 239 HIS A 243 PHE A 259 HIS A 272 CRYST1 60.030 120.770 140.800 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016658 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007102 0.00000