HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-MAR-07 2P4P TITLE CRYSTAL STRUCTURE OF A CORC_HLYC DOMAIN FROM HAEMOPHILUS DUCREYI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN HD1797; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CORC_HLYC DOMAIN, RESIDUES 347-429; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS DUCREYI; SOURCE 3 ORGANISM_TAXID: 233412; SOURCE 4 STRAIN: 35000HP; SOURCE 5 ATCC: 700724; SOURCE 6 GENE: TLYC, HD_1797; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS HAEMOPHILUS DUCREYI, CORC_HLYC, PFAM: PF03471, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,L.VOLKART,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 18-OCT-17 2P4P 1 REMARK REVDAT 3 13-JUL-11 2P4P 1 VERSN REVDAT 2 24-FEB-09 2P4P 1 VERSN REVDAT 1 22-MAY-07 2P4P 0 JRNL AUTH M.E.CUFF,L.VOLKART,S.MOY,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A CORC_HLYC DOMAIN FROM HAEMOPHILUS DUCREYI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 13684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 685 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 608 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.43000 REMARK 3 B22 (A**2) : 3.34000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1461 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1972 ; 1.552 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 169 ; 6.077 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;37.181 ;23.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 229 ;15.378 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.831 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 216 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1089 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 654 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1044 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 107 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 93 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 844 ; 1.246 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1349 ; 1.425 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 687 ; 2.807 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 620 ; 3.818 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6146 51.9254 15.7168 REMARK 3 T TENSOR REMARK 3 T11: -0.0113 T22: -0.0679 REMARK 3 T33: -0.0139 T12: -0.0227 REMARK 3 T13: -0.0135 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.0647 L22: 0.5807 REMARK 3 L33: 2.0582 L12: -0.3094 REMARK 3 L13: -0.0395 L23: -0.3102 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: 0.1909 S13: -0.0673 REMARK 3 S21: 0.0389 S22: -0.0091 S23: -0.0278 REMARK 3 S31: 0.0431 S32: -0.1263 S33: 0.0540 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1361 63.6471 -6.5424 REMARK 3 T TENSOR REMARK 3 T11: -0.0295 T22: -0.0662 REMARK 3 T33: -0.0192 T12: 0.0077 REMARK 3 T13: 0.0011 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.9660 L22: 0.7939 REMARK 3 L33: 2.9244 L12: 0.6088 REMARK 3 L13: -0.5122 L23: -0.4103 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.1379 S13: -0.1193 REMARK 3 S21: -0.0541 S22: 0.0172 S23: 0.0080 REMARK 3 S31: -0.0384 S32: -0.0864 S33: 0.0287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2P4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932, 0.97943 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13730 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP, HKL-3000, SHELXD, MLPHARE, DM, SOLVE, REMARK 200 RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CALCIUM CHLORIDE, 0.1M BIS-TRIS REMARK 280 PH 6.5, 30% PEG MME 550, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.77600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.71700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.33350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.71700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.77600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.33350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 VAL A 83 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ARG B 2 REMARK 465 ARG B 3 REMARK 465 ASN B 4 REMARK 465 GLU B 5 REMARK 465 VAL B 83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 46 -57.38 64.10 REMARK 500 THR A 52 -21.29 85.30 REMARK 500 ASP A 58 -134.10 53.58 REMARK 500 ASP B 31 -151.61 -126.32 REMARK 500 ARG B 46 -47.83 68.94 REMARK 500 MLY B 51 138.54 -39.53 REMARK 500 THR B 52 -24.76 83.34 REMARK 500 ASP B 58 -129.16 49.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 66 OD1 REMARK 620 2 THR B 67 O 84.5 REMARK 620 3 GLU B 68 OE1 99.8 73.7 REMARK 620 4 HOH A 252 O 78.2 156.1 125.2 REMARK 620 5 HOH B 448 O 125.6 129.8 63.1 74.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC86433.2 RELATED DB: TARGETDB DBREF 2P4P A 1 83 UNP Q7VKS4 Q7VKS4_HAEDU 347 429 DBREF 2P4P B 1 83 UNP Q7VKS4 Q7VKS4_HAEDU 347 429 SEQADV 2P4P SER A -2 UNP Q7VKS4 CLONING ARTIFACT SEQADV 2P4P ASN A -1 UNP Q7VKS4 CLONING ARTIFACT SEQADV 2P4P ALA A 0 UNP Q7VKS4 CLONING ARTIFACT SEQADV 2P4P MSE A 1 UNP Q7VKS4 MET 347 MODIFIED RESIDUE SEQADV 2P4P MSE A 20 UNP Q7VKS4 MET 366 MODIFIED RESIDUE SEQADV 2P4P MSE A 41 UNP Q7VKS4 MET 387 MODIFIED RESIDUE SEQADV 2P4P MSE A 42 UNP Q7VKS4 MET 388 MODIFIED RESIDUE SEQADV 2P4P MSE A 44 UNP Q7VKS4 MET 390 MODIFIED RESIDUE SEQADV 2P4P MLY A 47 UNP Q7VKS4 LYS 393 MODIFIED RESIDUE SEQADV 2P4P MLY A 50 UNP Q7VKS4 LYS 396 MODIFIED RESIDUE SEQADV 2P4P MLY A 51 UNP Q7VKS4 LYS 397 MODIFIED RESIDUE SEQADV 2P4P MLY A 59 UNP Q7VKS4 LYS 405 MODIFIED RESIDUE SEQADV 2P4P MLY A 61 UNP Q7VKS4 LYS 407 MODIFIED RESIDUE SEQADV 2P4P MSE A 76 UNP Q7VKS4 MET 422 MODIFIED RESIDUE SEQADV 2P4P MLY A 81 UNP Q7VKS4 LYS 427 MODIFIED RESIDUE SEQADV 2P4P SER B -2 UNP Q7VKS4 CLONING ARTIFACT SEQADV 2P4P ASN B -1 UNP Q7VKS4 CLONING ARTIFACT SEQADV 2P4P ALA B 0 UNP Q7VKS4 CLONING ARTIFACT SEQADV 2P4P MSE B 1 UNP Q7VKS4 MET 347 MODIFIED RESIDUE SEQADV 2P4P MSE B 20 UNP Q7VKS4 MET 366 MODIFIED RESIDUE SEQADV 2P4P MSE B 41 UNP Q7VKS4 MET 387 MODIFIED RESIDUE SEQADV 2P4P MSE B 42 UNP Q7VKS4 MET 388 MODIFIED RESIDUE SEQADV 2P4P MSE B 44 UNP Q7VKS4 MET 390 MODIFIED RESIDUE SEQADV 2P4P MLY B 47 UNP Q7VKS4 LYS 393 MODIFIED RESIDUE SEQADV 2P4P MLY B 50 UNP Q7VKS4 LYS 396 MODIFIED RESIDUE SEQADV 2P4P MLY B 51 UNP Q7VKS4 LYS 397 MODIFIED RESIDUE SEQADV 2P4P MLY B 59 UNP Q7VKS4 LYS 405 MODIFIED RESIDUE SEQADV 2P4P MLY B 61 UNP Q7VKS4 LYS 407 MODIFIED RESIDUE SEQADV 2P4P MSE B 76 UNP Q7VKS4 MET 422 MODIFIED RESIDUE SEQADV 2P4P MLY B 81 UNP Q7VKS4 LYS 427 MODIFIED RESIDUE SEQRES 1 A 86 SER ASN ALA MSE ARG ARG ASN GLU ASP SER TRP LEU ILE SEQRES 2 A 86 ASP GLY ALA THR PRO LEU GLU ASP VAL MSE ARG ALA LEU SEQRES 3 A 86 ASN ILE HIS THR PHE PRO ARG ASP GLU ASN TYR GLU THR SEQRES 4 A 86 ILE GLY GLY PHE MSE MSE TYR MSE LEU ARG MLY ILE PRO SEQRES 5 A 86 MLY MLY THR ASP PHE VAL LEU TYR ASP MLY TYR MLY PHE SEQRES 6 A 86 GLU ILE ILE ASP THR GLU ASN PHE ARG ILE ASP GLN LEU SEQRES 7 A 86 MSE VAL SER PHE ARG MLY ASP VAL SEQRES 1 B 86 SER ASN ALA MSE ARG ARG ASN GLU ASP SER TRP LEU ILE SEQRES 2 B 86 ASP GLY ALA THR PRO LEU GLU ASP VAL MSE ARG ALA LEU SEQRES 3 B 86 ASN ILE HIS THR PHE PRO ARG ASP GLU ASN TYR GLU THR SEQRES 4 B 86 ILE GLY GLY PHE MSE MSE TYR MSE LEU ARG MLY ILE PRO SEQRES 5 B 86 MLY MLY THR ASP PHE VAL LEU TYR ASP MLY TYR MLY PHE SEQRES 6 B 86 GLU ILE ILE ASP THR GLU ASN PHE ARG ILE ASP GLN LEU SEQRES 7 B 86 MSE VAL SER PHE ARG MLY ASP VAL MODRES 2P4P MSE A 1 MET SELENOMETHIONINE MODRES 2P4P MSE A 20 MET SELENOMETHIONINE MODRES 2P4P MSE A 41 MET SELENOMETHIONINE MODRES 2P4P MSE A 42 MET SELENOMETHIONINE MODRES 2P4P MSE A 44 MET SELENOMETHIONINE MODRES 2P4P MLY A 47 LYS N-DIMETHYL-LYSINE MODRES 2P4P MLY A 50 LYS N-DIMETHYL-LYSINE MODRES 2P4P MLY A 51 LYS N-DIMETHYL-LYSINE MODRES 2P4P MLY A 59 LYS N-DIMETHYL-LYSINE MODRES 2P4P MLY A 61 LYS N-DIMETHYL-LYSINE MODRES 2P4P MSE A 76 MET SELENOMETHIONINE MODRES 2P4P MLY A 81 LYS N-DIMETHYL-LYSINE MODRES 2P4P MSE B 20 MET SELENOMETHIONINE MODRES 2P4P MSE B 41 MET SELENOMETHIONINE MODRES 2P4P MSE B 42 MET SELENOMETHIONINE MODRES 2P4P MSE B 44 MET SELENOMETHIONINE MODRES 2P4P MLY B 47 LYS N-DIMETHYL-LYSINE MODRES 2P4P MLY B 50 LYS N-DIMETHYL-LYSINE MODRES 2P4P MLY B 51 LYS N-DIMETHYL-LYSINE MODRES 2P4P MLY B 59 LYS N-DIMETHYL-LYSINE MODRES 2P4P MLY B 61 LYS N-DIMETHYL-LYSINE MODRES 2P4P MSE B 76 MET SELENOMETHIONINE MODRES 2P4P MLY B 81 LYS N-DIMETHYL-LYSINE HET MSE A 1 8 HET MSE A 20 8 HET MSE A 41 8 HET MSE A 42 8 HET MSE A 44 8 HET MLY A 47 11 HET MLY A 50 11 HET MLY A 51 11 HET MLY A 59 11 HET MLY A 61 11 HET MSE A 76 8 HET MLY A 81 11 HET MSE B 20 8 HET MSE B 41 8 HET MSE B 42 16 HET MSE B 44 8 HET MLY B 47 11 HET MLY B 50 11 HET MLY B 51 11 HET MLY B 59 11 HET MLY B 61 11 HET MSE B 76 13 HET MLY B 81 11 HET CA A 201 1 HET MG B 301 1 HET GOL B 401 6 HETNAM MSE SELENOMETHIONINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 1 MLY 12(C8 H18 N2 O2) FORMUL 3 CA CA 2+ FORMUL 4 MG MG 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *98(H2 O) HELIX 1 1 PRO A 15 LEU A 23 1 9 HELIX 2 2 THR A 36 ARG A 46 1 11 HELIX 3 3 PRO B 15 LEU B 23 1 9 HELIX 4 4 THR B 36 ARG B 46 1 11 SHEET 1 A 4 SER A 7 ASP A 11 0 SHEET 2 A 4 ARG A 71 PHE A 79 -1 O LEU A 75 N ILE A 10 SHEET 3 A 4 TYR A 60 GLU A 68 -1 N ILE A 65 O GLN A 74 SHEET 4 A 4 PHE A 54 TYR A 57 -1 N VAL A 55 O PHE A 62 SHEET 1 B 4 SER B 7 ASP B 11 0 SHEET 2 B 4 ARG B 71 PHE B 79 -1 O VAL B 77 N TRP B 8 SHEET 3 B 4 TYR B 60 GLU B 68 -1 N MLY B 61 O SER B 78 SHEET 4 B 4 PHE B 54 TYR B 57 -1 N TYR B 57 O TYR B 60 LINK OD1 ASP B 66 MG MG B 301 1555 1555 2.19 LINK O THR B 67 MG MG B 301 1555 1555 2.44 LINK OE1 GLU B 68 MG MG B 301 1555 1555 2.06 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C VAL A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N ARG A 21 1555 1555 1.34 LINK C PHE A 40 N MSE A 41 1555 1555 1.34 LINK C MSE A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N TYR A 43 1555 1555 1.33 LINK C TYR A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N LEU A 45 1555 1555 1.33 LINK C ARG A 46 N MLY A 47 1555 1555 1.33 LINK C MLY A 47 N ILE A 48 1555 1555 1.33 LINK C PRO A 49 N MLY A 50 1555 1555 1.32 LINK C MLY A 50 N MLY A 51 1555 1555 1.34 LINK C MLY A 51 N THR A 52 1555 1555 1.34 LINK C ASP A 58 N MLY A 59 1555 1555 1.33 LINK C MLY A 59 N TYR A 60 1555 1555 1.33 LINK C TYR A 60 N MLY A 61 1555 1555 1.34 LINK C MLY A 61 N PHE A 62 1555 1555 1.33 LINK C LEU A 75 N MSE A 76 1555 1555 1.32 LINK C MSE A 76 N VAL A 77 1555 1555 1.33 LINK C ARG A 80 N MLY A 81 1555 1555 1.33 LINK C MLY A 81 N ASP A 82 1555 1555 1.33 LINK C VAL B 19 N MSE B 20 1555 1555 1.33 LINK C MSE B 20 N ARG B 21 1555 1555 1.34 LINK C PHE B 40 N MSE B 41 1555 1555 1.32 LINK C MSE B 41 N BMSE B 42 1555 1555 1.33 LINK C MSE B 41 N AMSE B 42 1555 1555 1.33 LINK C BMSE B 42 N TYR B 43 1555 1555 1.33 LINK C AMSE B 42 N TYR B 43 1555 1555 1.33 LINK C TYR B 43 N MSE B 44 1555 1555 1.34 LINK C MSE B 44 N LEU B 45 1555 1555 1.33 LINK C ARG B 46 N MLY B 47 1555 1555 1.33 LINK C MLY B 47 N ILE B 48 1555 1555 1.33 LINK C PRO B 49 N MLY B 50 1555 1555 1.33 LINK C MLY B 50 N MLY B 51 1555 1555 1.33 LINK C MLY B 51 N THR B 52 1555 1555 1.33 LINK C ASP B 58 N MLY B 59 1555 1555 1.33 LINK C MLY B 59 N TYR B 60 1555 1555 1.33 LINK C TYR B 60 N MLY B 61 1555 1555 1.33 LINK C MLY B 61 N PHE B 62 1555 1555 1.33 LINK C LEU B 75 N MSE B 76 1555 1555 1.33 LINK C MSE B 76 N VAL B 77 1555 1555 1.33 LINK C ARG B 80 N MLY B 81 1555 1555 1.33 LINK C MLY B 81 N ASP B 82 1555 1555 1.33 LINK MG MG B 301 O HOH A 252 1555 1555 2.84 LINK MG MG B 301 O HOH B 448 1555 1555 3.13 SITE 1 AC1 4 HOH A 252 ASP B 66 THR B 67 GLU B 68 SITE 1 AC2 6 MSE B 42 TYR B 43 ARG B 46 MLY B 59 SITE 2 AC2 6 HOH B 425 HOH B 438 CRYST1 29.552 58.667 87.434 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033839 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011437 0.00000