HEADER TRANSCRIPTION 13-MAR-07 2P4V TITLE CRYSTAL STRUCTURE OF THE TRANSCRIPT CLEAVAGE FACTOR, GREB AT 2.6A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION FACTOR GREB; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: TRANSCRIPT CLEAVAGE FACTOR GREB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: DH5ALPHA; SOURCE 5 GENE: GREB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BPIA577 KEYWDS TRANSCRIPTION, TRANSCRIPT CLEAVAGE, GRE-FACTORS, RNA POLYMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.N.VASSYLYEVA,V.SVETLOV,A.D.DEARBORN,S.KLYUYEV,I.ARTSIMOVITCH, AUTHOR 2 D.G.VASSYLYEV REVDAT 3 21-FEB-24 2P4V 1 REMARK REVDAT 2 24-FEB-09 2P4V 1 VERSN REVDAT 1 22-JAN-08 2P4V 0 JRNL AUTH M.N.VASSYLYEVA,V.SVETLOV,A.D.DEARBORN,S.KLYUYEV, JRNL AUTH 2 I.ARTSIMOVITCH,D.G.VASSYLYEV JRNL TITL THE CARBOXY-TERMINAL COILED-COIL OF THE RNA POLYMERASE JRNL TITL 2 BETA'-SUBUNIT IS THE MAIN BINDING SITE FOR GRE FACTORS. JRNL REF EMBO REP. V. 8 1038 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17917675 JRNL DOI 10.1038/SJ.EMBOR.7401079 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 72792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4318 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 320 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.790 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE PERFECT MEROHEDRAL TWINNING WAS REMARK 3 DETECTED IN THE CRYSTALS WITH THE TWINNING OPERATOR {H,-K,-L}. REMARK 3 THE REFINEMENT STATISTICS PRESENTED FOR THIS ENTRY CORRESPONDS REMARK 3 TO THE REFINEMENT CARRIED OUT USING THE TWINNING OPTION OF THE REMARK 3 CNS PROGRAM. FOR THE DEPOSITION THE DIFFRACTION DATA WERE REMARK 3 DETWINNED USING THE CNS PROGRAM. THEREFORE, SOME REFLECTIONS REMARK 3 WERE LOST DUE TO THE DETWINNING PROCEDURE AND ARE MISSING IN THE REMARK 3 DEPOSITED SF FILE, WHEREAS THE REFINEMENT STATISTICS CALCULATED REMARK 3 BASED ON THE DETWINNED ATA MIGHT BE SLIGHTLY DIFFERENT FROM REMARK 3 THOSE OBTAINED DURING THE "TWINNED" REFINEMENT INCLUDED IN THIS REMARK 3 ENTRY. REMARK 4 REMARK 4 2P4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000041968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 32.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SINGLE WAVELENGTH REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.75% PEG 8000, 25 MM AMMONIUM REMARK 280 SULFATE, 12 MM SODIUM CACODYLATE, 8MM TRIS HCL, 800 MM NACL, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.38500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.57750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.19250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MONOMER IS A BILOGICAL ASSEMBLY OF THE PROTEIN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 157 REMARK 465 PRO A 158 REMARK 465 LYS B 157 REMARK 465 PRO B 158 REMARK 465 LYS C 157 REMARK 465 PRO C 158 REMARK 465 LYS D 157 REMARK 465 PRO D 158 REMARK 465 LYS E 157 REMARK 465 PRO E 158 REMARK 465 LYS F 157 REMARK 465 PRO F 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 4 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 PRO B 4 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 TRP B 35 CA - CB - CG ANGL. DEV. = -12.9 DEGREES REMARK 500 LEU B 55 CA - CB - CG ANGL. DEV. = 20.2 DEGREES REMARK 500 TYR B 117 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 PRO C 4 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 LEU C 14 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO D 4 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 PRO D 79 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO E 4 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 LEU E 55 CA - CB - CG ANGL. DEV. = 20.9 DEGREES REMARK 500 TYR E 117 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 PRO F 4 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 80 -75.30 -36.57 REMARK 500 PHE A 86 -82.20 -5.58 REMARK 500 PHE A 103 142.41 172.56 REMARK 500 TYR A 117 41.83 -109.06 REMARK 500 ASP A 121 33.51 -75.90 REMARK 500 LEU A 129 -74.62 -36.16 REMARK 500 GLU A 132 172.04 -52.31 REMARK 500 VAL A 133 -9.71 -53.92 REMARK 500 PRO A 142 -85.36 -23.69 REMARK 500 ASN A 151 -77.77 -99.30 REMARK 500 GLN B 80 -74.26 -38.22 REMARK 500 PHE B 86 -83.46 -1.97 REMARK 500 PHE B 103 141.37 170.37 REMARK 500 TYR B 117 43.34 -107.80 REMARK 500 ASP B 121 33.32 -75.82 REMARK 500 LEU B 129 -75.67 -34.02 REMARK 500 GLU B 132 170.22 -52.33 REMARK 500 VAL B 133 -9.02 -52.34 REMARK 500 PRO B 142 -85.96 -23.78 REMARK 500 ASN B 151 -78.82 -98.98 REMARK 500 GLN C 80 -73.17 -40.64 REMARK 500 PHE C 86 -82.08 -4.53 REMARK 500 PHE C 103 142.06 171.96 REMARK 500 TYR C 117 41.86 -109.82 REMARK 500 ASP C 121 31.90 -75.25 REMARK 500 LEU C 129 -75.50 -35.21 REMARK 500 GLU C 132 170.55 -55.27 REMARK 500 VAL C 133 -8.75 -51.33 REMARK 500 PRO C 142 -85.12 -23.68 REMARK 500 ASN C 151 -76.72 -101.38 REMARK 500 VAL D 75 76.73 -119.11 REMARK 500 GLN D 80 -72.89 -39.19 REMARK 500 PHE D 86 -82.30 -6.83 REMARK 500 PHE D 103 142.44 171.62 REMARK 500 TYR D 117 41.38 -108.26 REMARK 500 ASP D 121 34.43 -77.35 REMARK 500 LEU D 129 -75.17 -36.09 REMARK 500 GLU D 132 171.75 -55.14 REMARK 500 VAL D 133 -9.70 -52.53 REMARK 500 PRO D 142 -86.17 -24.16 REMARK 500 ASN D 151 -77.83 -99.30 REMARK 500 GLN E 80 -73.98 -38.42 REMARK 500 PHE E 86 -83.83 -1.58 REMARK 500 PHE E 103 141.51 170.18 REMARK 500 TYR E 117 44.77 -109.09 REMARK 500 ASP E 121 32.35 -74.06 REMARK 500 LEU E 129 -76.93 -33.53 REMARK 500 VAL E 133 -8.01 -53.13 REMARK 500 PRO E 142 -85.37 -23.68 REMARK 500 ASN E 151 -78.40 -98.89 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 20 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GRJ RELATED DB: PDB REMARK 900 GREA TRANSCRIPT CLEAVAGE FACTOR FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 2EUL RELATED DB: PDB REMARK 900 STRUCTURE OF THE TRANSCRIPTION FACTOR GFH1. REMARK 900 RELATED ID: 2ETN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THERMUS AQUATICUS GFH1 REMARK 900 RELATED ID: 2F23 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GREA FACTOR HOMOLOG 1 (GFH1) PROTEIN OF REMARK 900 THERMUS THERMOPHILUS DBREF 2P4V A 1 158 UNP P64273 GREB_ECOL6 1 158 DBREF 2P4V B 1 158 UNP P64273 GREB_ECOL6 1 158 DBREF 2P4V C 1 158 UNP P64273 GREB_ECOL6 1 158 DBREF 2P4V D 1 158 UNP P64273 GREB_ECOL6 1 158 DBREF 2P4V E 1 158 UNP P64273 GREB_ECOL6 1 158 DBREF 2P4V F 1 158 UNP P64273 GREB_ECOL6 1 158 SEQRES 1 A 158 MET LYS THR PRO LEU VAL THR ARG GLU GLY TYR GLU LYS SEQRES 2 A 158 LEU LYS GLN GLU LEU ASN TYR LEU TRP ARG GLU GLU ARG SEQRES 3 A 158 PRO GLU VAL THR LYS LYS VAL THR TRP ALA ALA SER LEU SEQRES 4 A 158 GLY ASP ARG SER GLU ASN ALA ASP TYR GLN TYR ASN LYS SEQRES 5 A 158 LYS ARG LEU ARG GLU ILE ASP ARG ARG VAL ARG TYR LEU SEQRES 6 A 158 THR LYS CYS MET GLU ASN LEU LYS ILE VAL ASP TYR SER SEQRES 7 A 158 PRO GLN GLN GLU GLY LYS VAL PHE PHE GLY ALA TRP VAL SEQRES 8 A 158 GLU ILE GLU ASN ASP ASP GLY VAL THR HIS ARG PHE ARG SEQRES 9 A 158 ILE VAL GLY TYR ASP GLU ILE PHE GLY ARG LYS ASP TYR SEQRES 10 A 158 ILE SER ILE ASP SER PRO MET ALA ARG ALA LEU LEU LYS SEQRES 11 A 158 LYS GLU VAL GLY ASP LEU ALA VAL VAL ASN THR PRO ALA SEQRES 12 A 158 GLY GLU ALA SER TRP TYR VAL ASN ALA ILE GLU TYR VAL SEQRES 13 A 158 LYS PRO SEQRES 1 B 158 MET LYS THR PRO LEU VAL THR ARG GLU GLY TYR GLU LYS SEQRES 2 B 158 LEU LYS GLN GLU LEU ASN TYR LEU TRP ARG GLU GLU ARG SEQRES 3 B 158 PRO GLU VAL THR LYS LYS VAL THR TRP ALA ALA SER LEU SEQRES 4 B 158 GLY ASP ARG SER GLU ASN ALA ASP TYR GLN TYR ASN LYS SEQRES 5 B 158 LYS ARG LEU ARG GLU ILE ASP ARG ARG VAL ARG TYR LEU SEQRES 6 B 158 THR LYS CYS MET GLU ASN LEU LYS ILE VAL ASP TYR SER SEQRES 7 B 158 PRO GLN GLN GLU GLY LYS VAL PHE PHE GLY ALA TRP VAL SEQRES 8 B 158 GLU ILE GLU ASN ASP ASP GLY VAL THR HIS ARG PHE ARG SEQRES 9 B 158 ILE VAL GLY TYR ASP GLU ILE PHE GLY ARG LYS ASP TYR SEQRES 10 B 158 ILE SER ILE ASP SER PRO MET ALA ARG ALA LEU LEU LYS SEQRES 11 B 158 LYS GLU VAL GLY ASP LEU ALA VAL VAL ASN THR PRO ALA SEQRES 12 B 158 GLY GLU ALA SER TRP TYR VAL ASN ALA ILE GLU TYR VAL SEQRES 13 B 158 LYS PRO SEQRES 1 C 158 MET LYS THR PRO LEU VAL THR ARG GLU GLY TYR GLU LYS SEQRES 2 C 158 LEU LYS GLN GLU LEU ASN TYR LEU TRP ARG GLU GLU ARG SEQRES 3 C 158 PRO GLU VAL THR LYS LYS VAL THR TRP ALA ALA SER LEU SEQRES 4 C 158 GLY ASP ARG SER GLU ASN ALA ASP TYR GLN TYR ASN LYS SEQRES 5 C 158 LYS ARG LEU ARG GLU ILE ASP ARG ARG VAL ARG TYR LEU SEQRES 6 C 158 THR LYS CYS MET GLU ASN LEU LYS ILE VAL ASP TYR SER SEQRES 7 C 158 PRO GLN GLN GLU GLY LYS VAL PHE PHE GLY ALA TRP VAL SEQRES 8 C 158 GLU ILE GLU ASN ASP ASP GLY VAL THR HIS ARG PHE ARG SEQRES 9 C 158 ILE VAL GLY TYR ASP GLU ILE PHE GLY ARG LYS ASP TYR SEQRES 10 C 158 ILE SER ILE ASP SER PRO MET ALA ARG ALA LEU LEU LYS SEQRES 11 C 158 LYS GLU VAL GLY ASP LEU ALA VAL VAL ASN THR PRO ALA SEQRES 12 C 158 GLY GLU ALA SER TRP TYR VAL ASN ALA ILE GLU TYR VAL SEQRES 13 C 158 LYS PRO SEQRES 1 D 158 MET LYS THR PRO LEU VAL THR ARG GLU GLY TYR GLU LYS SEQRES 2 D 158 LEU LYS GLN GLU LEU ASN TYR LEU TRP ARG GLU GLU ARG SEQRES 3 D 158 PRO GLU VAL THR LYS LYS VAL THR TRP ALA ALA SER LEU SEQRES 4 D 158 GLY ASP ARG SER GLU ASN ALA ASP TYR GLN TYR ASN LYS SEQRES 5 D 158 LYS ARG LEU ARG GLU ILE ASP ARG ARG VAL ARG TYR LEU SEQRES 6 D 158 THR LYS CYS MET GLU ASN LEU LYS ILE VAL ASP TYR SER SEQRES 7 D 158 PRO GLN GLN GLU GLY LYS VAL PHE PHE GLY ALA TRP VAL SEQRES 8 D 158 GLU ILE GLU ASN ASP ASP GLY VAL THR HIS ARG PHE ARG SEQRES 9 D 158 ILE VAL GLY TYR ASP GLU ILE PHE GLY ARG LYS ASP TYR SEQRES 10 D 158 ILE SER ILE ASP SER PRO MET ALA ARG ALA LEU LEU LYS SEQRES 11 D 158 LYS GLU VAL GLY ASP LEU ALA VAL VAL ASN THR PRO ALA SEQRES 12 D 158 GLY GLU ALA SER TRP TYR VAL ASN ALA ILE GLU TYR VAL SEQRES 13 D 158 LYS PRO SEQRES 1 E 158 MET LYS THR PRO LEU VAL THR ARG GLU GLY TYR GLU LYS SEQRES 2 E 158 LEU LYS GLN GLU LEU ASN TYR LEU TRP ARG GLU GLU ARG SEQRES 3 E 158 PRO GLU VAL THR LYS LYS VAL THR TRP ALA ALA SER LEU SEQRES 4 E 158 GLY ASP ARG SER GLU ASN ALA ASP TYR GLN TYR ASN LYS SEQRES 5 E 158 LYS ARG LEU ARG GLU ILE ASP ARG ARG VAL ARG TYR LEU SEQRES 6 E 158 THR LYS CYS MET GLU ASN LEU LYS ILE VAL ASP TYR SER SEQRES 7 E 158 PRO GLN GLN GLU GLY LYS VAL PHE PHE GLY ALA TRP VAL SEQRES 8 E 158 GLU ILE GLU ASN ASP ASP GLY VAL THR HIS ARG PHE ARG SEQRES 9 E 158 ILE VAL GLY TYR ASP GLU ILE PHE GLY ARG LYS ASP TYR SEQRES 10 E 158 ILE SER ILE ASP SER PRO MET ALA ARG ALA LEU LEU LYS SEQRES 11 E 158 LYS GLU VAL GLY ASP LEU ALA VAL VAL ASN THR PRO ALA SEQRES 12 E 158 GLY GLU ALA SER TRP TYR VAL ASN ALA ILE GLU TYR VAL SEQRES 13 E 158 LYS PRO SEQRES 1 F 158 MET LYS THR PRO LEU VAL THR ARG GLU GLY TYR GLU LYS SEQRES 2 F 158 LEU LYS GLN GLU LEU ASN TYR LEU TRP ARG GLU GLU ARG SEQRES 3 F 158 PRO GLU VAL THR LYS LYS VAL THR TRP ALA ALA SER LEU SEQRES 4 F 158 GLY ASP ARG SER GLU ASN ALA ASP TYR GLN TYR ASN LYS SEQRES 5 F 158 LYS ARG LEU ARG GLU ILE ASP ARG ARG VAL ARG TYR LEU SEQRES 6 F 158 THR LYS CYS MET GLU ASN LEU LYS ILE VAL ASP TYR SER SEQRES 7 F 158 PRO GLN GLN GLU GLY LYS VAL PHE PHE GLY ALA TRP VAL SEQRES 8 F 158 GLU ILE GLU ASN ASP ASP GLY VAL THR HIS ARG PHE ARG SEQRES 9 F 158 ILE VAL GLY TYR ASP GLU ILE PHE GLY ARG LYS ASP TYR SEQRES 10 F 158 ILE SER ILE ASP SER PRO MET ALA ARG ALA LEU LEU LYS SEQRES 11 F 158 LYS GLU VAL GLY ASP LEU ALA VAL VAL ASN THR PRO ALA SEQRES 12 F 158 GLY GLU ALA SER TRP TYR VAL ASN ALA ILE GLU TYR VAL SEQRES 13 F 158 LYS PRO FORMUL 7 HOH *333(H2 O) HELIX 1 1 THR A 7 GLU A 24 1 18 HELIX 2 2 GLU A 24 GLY A 40 1 17 HELIX 3 3 ASN A 45 LEU A 72 1 28 HELIX 4 4 SER A 122 LEU A 128 1 7 HELIX 5 5 THR B 7 GLU B 24 1 18 HELIX 6 6 GLU B 24 GLY B 40 1 17 HELIX 7 7 ASN B 45 LEU B 72 1 28 HELIX 8 8 SER B 122 LEU B 128 1 7 HELIX 9 9 THR C 7 GLU C 24 1 18 HELIX 10 10 GLU C 24 GLY C 40 1 17 HELIX 11 11 ASN C 45 LEU C 72 1 28 HELIX 12 12 SER C 122 LEU C 128 1 7 HELIX 13 13 THR D 7 GLU D 24 1 18 HELIX 14 14 GLU D 24 GLY D 40 1 17 HELIX 15 15 ASN D 45 LEU D 72 1 28 HELIX 16 16 SER D 122 LEU D 128 1 7 HELIX 17 17 THR E 7 GLU E 24 1 18 HELIX 18 18 GLU E 24 GLY E 40 1 17 HELIX 19 19 ASN E 45 LEU E 72 1 28 HELIX 20 20 SER E 122 LEU E 128 1 7 HELIX 21 21 THR F 7 GLU F 24 1 18 HELIX 22 22 GLU F 24 GLY F 40 1 17 HELIX 23 23 ASN F 45 LEU F 72 1 28 HELIX 24 24 SER F 122 LEU F 128 1 7 SHEET 1 A 2 LEU A 5 VAL A 6 0 SHEET 2 A 2 LYS A 73 ILE A 74 1 O LYS A 73 N VAL A 6 SHEET 1 B 4 HIS A 101 ARG A 104 0 SHEET 2 B 4 TRP A 90 GLU A 94 -1 N VAL A 91 O PHE A 103 SHEET 3 B 4 GLU A 145 GLU A 154 -1 O ASN A 151 N GLU A 92 SHEET 4 B 4 LEU A 136 ASN A 140 -1 N ALA A 137 O TRP A 148 SHEET 1 C 2 LEU B 5 VAL B 6 0 SHEET 2 C 2 LYS B 73 ILE B 74 1 O LYS B 73 N VAL B 6 SHEET 1 D 4 HIS B 101 ARG B 104 0 SHEET 2 D 4 TRP B 90 GLU B 94 -1 N VAL B 91 O PHE B 103 SHEET 3 D 4 GLU B 145 GLU B 154 -1 O ASN B 151 N GLU B 92 SHEET 4 D 4 LEU B 136 ASN B 140 -1 N ALA B 137 O TRP B 148 SHEET 1 E 2 LEU C 5 VAL C 6 0 SHEET 2 E 2 LYS C 73 ILE C 74 1 O LYS C 73 N VAL C 6 SHEET 1 F 4 HIS C 101 ARG C 104 0 SHEET 2 F 4 TRP C 90 GLU C 94 -1 N VAL C 91 O PHE C 103 SHEET 3 F 4 GLU C 145 GLU C 154 -1 O ASN C 151 N GLU C 92 SHEET 4 F 4 LEU C 136 ASN C 140 -1 N ALA C 137 O TRP C 148 SHEET 1 G 2 LEU D 5 VAL D 6 0 SHEET 2 G 2 LYS D 73 ILE D 74 1 O LYS D 73 N VAL D 6 SHEET 1 H 4 HIS D 101 ARG D 104 0 SHEET 2 H 4 TRP D 90 GLU D 94 -1 N VAL D 91 O PHE D 103 SHEET 3 H 4 GLU D 145 GLU D 154 -1 O ASN D 151 N GLU D 92 SHEET 4 H 4 LEU D 136 ASN D 140 -1 N ALA D 137 O TRP D 148 SHEET 1 I 2 LEU E 5 VAL E 6 0 SHEET 2 I 2 LYS E 73 ILE E 74 1 O LYS E 73 N VAL E 6 SHEET 1 J 4 HIS E 101 ARG E 104 0 SHEET 2 J 4 TRP E 90 GLU E 94 -1 N VAL E 91 O PHE E 103 SHEET 3 J 4 GLU E 145 GLU E 154 -1 O ASN E 151 N GLU E 92 SHEET 4 J 4 LEU E 136 ASN E 140 -1 N ALA E 137 O TRP E 148 SHEET 1 K 2 LEU F 5 VAL F 6 0 SHEET 2 K 2 LYS F 73 ILE F 74 1 O LYS F 73 N VAL F 6 SHEET 1 L 4 HIS F 101 ARG F 104 0 SHEET 2 L 4 TRP F 90 GLU F 94 -1 N VAL F 91 O PHE F 103 SHEET 3 L 4 GLU F 145 GLU F 154 -1 O ASN F 151 N GLU F 92 SHEET 4 L 4 LEU F 136 ASN F 140 -1 N ALA F 137 O TRP F 148 CRYST1 148.320 148.320 116.770 90.00 90.00 90.00 P 43 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006742 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008564 0.00000