data_2P5M # _entry.id 2P5M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2P5M pdb_00002p5m 10.2210/pdb2p5m/pdb RCSB RCSB041995 ? ? WWPDB D_1000041995 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2P5K . unspecified PDB 2P5L . unspecified # _pdbx_database_status.entry_id 2P5M _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-03-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Garnett, J.A.' 1 'Baumberg, S.' 2 'Stockley, P.G.' 3 'Phillips, S.E.V.' 4 # _citation.id primary _citation.title 'Structure of the C-terminal effector-binding domain of AhrC bound to its corepressor L-arginine.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 63 _citation.page_first 918 _citation.page_last 921 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18007040 _citation.pdbx_database_id_DOI 10.1107/S1744309107049391 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Garnett, J.A.' 1 ? primary 'Baumberg, S.' 2 ? primary 'Stockley, P.G.' 3 ? primary 'Phillips, S.E.' 4 ? # _cell.entry_id 2P5M _cell.length_a 117.014 _cell.length_b 117.014 _cell.length_c 68.927 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P5M _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Arginine repressor' 9289.932 3 ? D67M 'C-terminal domain (residues 67-149)' ? 2 non-polymer syn ARGININE 175.209 5 ? ? ? ? 3 water nat water 18.015 169 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Arginine hydroxamate resistance protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLL ELL ; _entity_poly.pdbx_seq_one_letter_code_can ;MQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLL ELL ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ARG n 1 4 PHE n 1 5 ASN n 1 6 PRO n 1 7 LEU n 1 8 SER n 1 9 LYS n 1 10 LEU n 1 11 LYS n 1 12 ARG n 1 13 ALA n 1 14 LEU n 1 15 MET n 1 16 ASP n 1 17 ALA n 1 18 PHE n 1 19 VAL n 1 20 LYS n 1 21 ILE n 1 22 ASP n 1 23 SER n 1 24 ALA n 1 25 SER n 1 26 HIS n 1 27 MET n 1 28 ILE n 1 29 VAL n 1 30 LEU n 1 31 LYS n 1 32 THR n 1 33 MET n 1 34 PRO n 1 35 GLY n 1 36 ASN n 1 37 ALA n 1 38 GLN n 1 39 ALA n 1 40 ILE n 1 41 GLY n 1 42 ALA n 1 43 LEU n 1 44 MET n 1 45 ASP n 1 46 ASN n 1 47 LEU n 1 48 ASP n 1 49 TRP n 1 50 ASP n 1 51 GLU n 1 52 MET n 1 53 MET n 1 54 GLY n 1 55 THR n 1 56 ILE n 1 57 CYS n 1 58 GLY n 1 59 ASP n 1 60 ASP n 1 61 THR n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 ILE n 1 66 CYS n 1 67 ARG n 1 68 THR n 1 69 PRO n 1 70 GLU n 1 71 ASP n 1 72 THR n 1 73 GLU n 1 74 GLY n 1 75 VAL n 1 76 LYS n 1 77 ASN n 1 78 ARG n 1 79 LEU n 1 80 LEU n 1 81 GLU n 1 82 LEU n 1 83 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene 'argR, ahrC' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ARGR_BACSU _struct_ref.pdbx_db_accession P17893 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLL ELL ; _struct_ref.pdbx_align_begin 67 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2P5M A 1 ? 83 ? P17893 67 ? 149 ? 67 149 2 1 2P5M B 1 ? 83 ? P17893 67 ? 149 ? 67 149 3 1 2P5M C 1 ? 83 ? P17893 67 ? 149 ? 67 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2P5M MET A 1 ? UNP P17893 ASP 67 'engineered mutation' 67 1 2 2P5M MET B 1 ? UNP P17893 ASP 67 'engineered mutation' 67 2 3 2P5M MET C 1 ? UNP P17893 ASP 67 'engineered mutation' 67 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2P5M _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.8 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '28% PEG 400, 0.1M Tris-HCl, 0.2M magnesium chloride, pH 8.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-10-23 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX14.2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX14.2 # _reflns.entry_id 2P5M _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 24.11 _reflns.number_all ? _reflns.number_obs 20787 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rsym_value 0.077 _reflns.pdbx_netI_over_sigmaI 32.4 _reflns.B_iso_Wilson_estimate 21.2 _reflns.pdbx_redundancy 16.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.06 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.391 _reflns_shell.meanI_over_sigI_obs 6.6 _reflns_shell.pdbx_Rsym_value 0.391 _reflns_shell.pdbx_redundancy 12.3 _reflns_shell.number_unique_all 36574 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2P5M _refine.ls_d_res_high 1.950 _refine.ls_d_res_low 24.110 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.380 _refine.ls_number_reflns_obs 20217 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_obs 0.187 _refine.ls_R_factor_R_work 0.182 _refine.ls_R_factor_R_free 0.224 _refine.ls_percent_reflns_R_free 10.200 _refine.ls_number_reflns_R_free 2057 _refine.B_iso_mean 22.466 _refine.aniso_B[1][1] 0.460 _refine.aniso_B[2][2] 0.460 _refine.aniso_B[3][3] -0.700 _refine.aniso_B[1][2] 0.230 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.pdbx_overall_ESU_R 0.170 _refine.pdbx_overall_ESU_R_Free 0.154 _refine.overall_SU_ML 0.097 _refine.overall_SU_B 6.085 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'pdb entry 1B4B, Trimer of C-terminal domains from B. steareothermophilus' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model 'Individual isotropic temperature factors and individual TLS parameters for chains A-C' _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1843 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 174 _refine_hist.number_atoms_total 2061 _refine_hist.d_res_high 1.950 _refine_hist.d_res_low 24.110 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1901 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2556 1.415 2.006 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 237 5.151 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 75 35.818 25.200 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 378 15.472 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 13.020 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 306 0.094 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1365 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1117 0.225 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1338 0.311 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 213 0.123 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 82 0.223 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 38 0.154 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1235 0.894 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1947 1.165 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 718 2.251 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 609 3.705 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.000 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 93.050 _refine_ls_shell.number_reflns_R_work 1260 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.194 _refine_ls_shell.R_factor_R_free 0.250 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 120 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1380 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2P5M _struct.title 'C-terminal domain hexamer of AhrC bound with L-arginine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P5M _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'alpha-beta, L-arginine binding domain, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 5 ? ALA A 17 ? ASN A 71 ALA A 83 1 ? 13 HELX_P HELX_P2 2 ASN A 36 ? ASN A 46 ? ASN A 102 ASN A 112 1 ? 11 HELX_P HELX_P3 3 THR A 68 ? GLU A 81 ? THR A 134 GLU A 147 1 ? 14 HELX_P HELX_P4 4 ASN B 5 ? ALA B 17 ? ASN B 71 ALA B 83 1 ? 13 HELX_P HELX_P5 5 ASN B 36 ? ASN B 46 ? ASN B 102 ASN B 112 1 ? 11 HELX_P HELX_P6 6 THR B 68 ? GLU B 81 ? THR B 134 GLU B 147 1 ? 14 HELX_P HELX_P7 7 LEU C 7 ? ALA C 17 ? LEU C 73 ALA C 83 1 ? 11 HELX_P HELX_P8 8 ASN C 36 ? ASP C 48 ? ASN C 102 ASP C 114 1 ? 13 HELX_P HELX_P9 9 THR C 68 ? LEU C 82 ? THR C 134 LEU C 148 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 18 ? ALA A 24 ? PHE A 84 ALA A 90 A 2 MET A 27 ? THR A 32 ? MET A 93 THR A 98 A 3 THR A 61 ? ILE A 65 ? THR A 127 ILE A 131 A 4 GLY A 54 ? CYS A 57 ? GLY A 120 CYS A 123 B 1 PHE B 18 ? ALA B 24 ? PHE B 84 ALA B 90 B 2 MET B 27 ? THR B 32 ? MET B 93 THR B 98 B 3 THR B 61 ? ILE B 65 ? THR B 127 ILE B 131 B 4 GLY B 54 ? CYS B 57 ? GLY B 120 CYS B 123 C 1 PHE C 18 ? ALA C 24 ? PHE C 84 ALA C 90 C 2 MET C 27 ? THR C 32 ? MET C 93 THR C 98 C 3 THR C 61 ? CYS C 66 ? THR C 127 CYS C 132 C 4 MET C 52 ? CYS C 57 ? MET C 118 CYS C 123 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 20 ? N LYS A 86 O LYS A 31 ? O LYS A 97 A 2 3 N LEU A 30 ? N LEU A 96 O ILE A 62 ? O ILE A 128 A 3 4 O LEU A 63 ? O LEU A 129 N ILE A 56 ? N ILE A 122 B 1 2 N LYS B 20 ? N LYS B 86 O LYS B 31 ? O LYS B 97 B 2 3 N LEU B 30 ? N LEU B 96 O ILE B 62 ? O ILE B 128 B 3 4 O LEU B 63 ? O LEU B 129 N ILE B 56 ? N ILE B 122 C 1 2 N LYS C 20 ? N LYS C 86 O LYS C 31 ? O LYS C 97 C 2 3 N LEU C 30 ? N LEU C 96 O ILE C 62 ? O ILE C 128 C 3 4 O LEU C 63 ? O LEU C 129 N ILE C 56 ? N ILE C 122 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B ARG 201 ? 14 'BINDING SITE FOR RESIDUE ARG B 201' AC2 Software B ARG 202 ? 15 'BINDING SITE FOR RESIDUE ARG B 202' AC3 Software B ARG 203 ? 16 'BINDING SITE FOR RESIDUE ARG B 203' AC4 Software B ARG 204 ? 4 'BINDING SITE FOR RESIDUE ARG B 204' AC5 Software B ARG 205 ? 2 'BINDING SITE FOR RESIDUE ARG B 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 PRO A 34 ? PRO A 100 . ? 11_555 ? 2 AC1 14 GLY A 35 ? GLY A 101 . ? 11_555 ? 3 AC1 14 GLY A 58 ? GLY A 124 . ? 1_555 ? 4 AC1 14 ASP A 59 ? ASP A 125 . ? 1_555 ? 5 AC1 14 ASP A 59 ? ASP A 125 . ? 11_555 ? 6 AC1 14 ASP A 60 ? ASP A 126 . ? 1_555 ? 7 AC1 14 THR A 61 ? THR A 127 . ? 1_555 ? 8 AC1 14 GLN B 38 ? GLN B 104 . ? 1_555 ? 9 AC1 14 ALA B 42 ? ALA B 108 . ? 1_555 ? 10 AC1 14 ASP B 45 ? ASP B 111 . ? 1_555 ? 11 AC1 14 THR B 55 ? THR B 121 . ? 1_555 ? 12 AC1 14 CYS B 57 ? CYS B 123 . ? 1_555 ? 13 AC1 14 HOH J . ? HOH B 216 . ? 1_555 ? 14 AC1 14 HOH J . ? HOH B 238 . ? 1_555 ? 15 AC2 15 GLY B 58 ? GLY B 124 . ? 1_555 ? 16 AC2 15 ASP B 59 ? ASP B 125 . ? 1_555 ? 17 AC2 15 ASP B 60 ? ASP B 126 . ? 1_555 ? 18 AC2 15 THR B 61 ? THR B 127 . ? 1_555 ? 19 AC2 15 ARG F . ? ARG B 203 . ? 11_555 ? 20 AC2 15 HOH J . ? HOH B 234 . ? 1_555 ? 21 AC2 15 HOH J . ? HOH B 249 . ? 1_555 ? 22 AC2 15 PRO C 34 ? PRO C 100 . ? 11_555 ? 23 AC2 15 GLY C 35 ? GLY C 101 . ? 11_555 ? 24 AC2 15 GLN C 38 ? GLN C 104 . ? 1_555 ? 25 AC2 15 ALA C 42 ? ALA C 108 . ? 1_555 ? 26 AC2 15 ASP C 45 ? ASP C 111 . ? 1_555 ? 27 AC2 15 THR C 55 ? THR C 121 . ? 1_555 ? 28 AC2 15 CYS C 57 ? CYS C 123 . ? 1_555 ? 29 AC2 15 ASP C 59 ? ASP C 125 . ? 11_555 ? 30 AC3 16 GLN A 38 ? GLN A 104 . ? 1_555 ? 31 AC3 16 ALA A 42 ? ALA A 108 . ? 1_555 ? 32 AC3 16 ASP A 45 ? ASP A 111 . ? 1_555 ? 33 AC3 16 THR A 55 ? THR A 121 . ? 1_555 ? 34 AC3 16 ILE A 56 ? ILE A 122 . ? 1_555 ? 35 AC3 16 CYS A 57 ? CYS A 123 . ? 1_555 ? 36 AC3 16 PRO B 34 ? PRO B 100 . ? 11_555 ? 37 AC3 16 GLY B 35 ? GLY B 101 . ? 11_555 ? 38 AC3 16 ASP B 59 ? ASP B 125 . ? 11_555 ? 39 AC3 16 ARG E . ? ARG B 202 . ? 11_555 ? 40 AC3 16 HOH J . ? HOH B 209 . ? 1_555 ? 41 AC3 16 HOH J . ? HOH B 227 . ? 1_555 ? 42 AC3 16 GLY C 58 ? GLY C 124 . ? 1_555 ? 43 AC3 16 ASP C 59 ? ASP C 125 . ? 1_555 ? 44 AC3 16 ASP C 60 ? ASP C 126 . ? 1_555 ? 45 AC3 16 THR C 61 ? THR C 127 . ? 1_555 ? 46 AC4 4 GLU A 81 ? GLU A 147 . ? 12_565 ? 47 AC4 4 LEU A 83 ? LEU A 149 . ? 12_565 ? 48 AC4 4 ASP B 50 ? ASP B 116 . ? 1_555 ? 49 AC4 4 HOH J . ? HOH B 211 . ? 1_555 ? 50 AC5 2 GLU A 81 ? GLU A 147 . ? 12_565 ? 51 AC5 2 ASP B 71 ? ASP B 137 . ? 1_555 ? # _atom_sites.entry_id 2P5M _atom_sites.fract_transf_matrix[1][1] 0.008546 _atom_sites.fract_transf_matrix[1][2] 0.004934 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009868 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014508 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 67 ? ? ? A . n A 1 2 GLN 2 68 68 GLN GLN A . n A 1 3 ARG 3 69 69 ARG ARG A . n A 1 4 PHE 4 70 70 PHE PHE A . n A 1 5 ASN 5 71 71 ASN ASN A . n A 1 6 PRO 6 72 72 PRO PRO A . n A 1 7 LEU 7 73 73 LEU LEU A . n A 1 8 SER 8 74 74 SER SER A . n A 1 9 LYS 9 75 75 LYS LYS A . n A 1 10 LEU 10 76 76 LEU LEU A . n A 1 11 LYS 11 77 77 LYS LYS A . n A 1 12 ARG 12 78 78 ARG ARG A . n A 1 13 ALA 13 79 79 ALA ALA A . n A 1 14 LEU 14 80 80 LEU LEU A . n A 1 15 MET 15 81 81 MET MET A . n A 1 16 ASP 16 82 82 ASP ASP A . n A 1 17 ALA 17 83 83 ALA ALA A . n A 1 18 PHE 18 84 84 PHE PHE A . n A 1 19 VAL 19 85 85 VAL VAL A . n A 1 20 LYS 20 86 86 LYS LYS A . n A 1 21 ILE 21 87 87 ILE ILE A . n A 1 22 ASP 22 88 88 ASP ASP A . n A 1 23 SER 23 89 89 SER SER A . n A 1 24 ALA 24 90 90 ALA ALA A . n A 1 25 SER 25 91 91 SER SER A . n A 1 26 HIS 26 92 92 HIS HIS A . n A 1 27 MET 27 93 93 MET MET A . n A 1 28 ILE 28 94 94 ILE ILE A . n A 1 29 VAL 29 95 95 VAL VAL A . n A 1 30 LEU 30 96 96 LEU LEU A . n A 1 31 LYS 31 97 97 LYS LYS A . n A 1 32 THR 32 98 98 THR THR A . n A 1 33 MET 33 99 99 MET MET A . n A 1 34 PRO 34 100 100 PRO PRO A . n A 1 35 GLY 35 101 101 GLY GLY A . n A 1 36 ASN 36 102 102 ASN ASN A . n A 1 37 ALA 37 103 103 ALA ALA A . n A 1 38 GLN 38 104 104 GLN GLN A . n A 1 39 ALA 39 105 105 ALA ALA A . n A 1 40 ILE 40 106 106 ILE ILE A . n A 1 41 GLY 41 107 107 GLY GLY A . n A 1 42 ALA 42 108 108 ALA ALA A . n A 1 43 LEU 43 109 109 LEU LEU A . n A 1 44 MET 44 110 110 MET MET A . n A 1 45 ASP 45 111 111 ASP ASP A . n A 1 46 ASN 46 112 112 ASN ASN A . n A 1 47 LEU 47 113 113 LEU LEU A . n A 1 48 ASP 48 114 114 ASP ASP A . n A 1 49 TRP 49 115 115 TRP TRP A . n A 1 50 ASP 50 116 116 ASP ASP A . n A 1 51 GLU 51 117 117 GLU GLU A . n A 1 52 MET 52 118 118 MET MET A . n A 1 53 MET 53 119 119 MET MET A . n A 1 54 GLY 54 120 120 GLY GLY A . n A 1 55 THR 55 121 121 THR THR A . n A 1 56 ILE 56 122 122 ILE ILE A . n A 1 57 CYS 57 123 123 CYS CYS A . n A 1 58 GLY 58 124 124 GLY GLY A . n A 1 59 ASP 59 125 125 ASP ASP A . n A 1 60 ASP 60 126 126 ASP ASP A . n A 1 61 THR 61 127 127 THR THR A . n A 1 62 ILE 62 128 128 ILE ILE A . n A 1 63 LEU 63 129 129 LEU LEU A . n A 1 64 ILE 64 130 130 ILE ILE A . n A 1 65 ILE 65 131 131 ILE ILE A . n A 1 66 CYS 66 132 132 CYS CYS A . n A 1 67 ARG 67 133 133 ARG ARG A . n A 1 68 THR 68 134 134 THR THR A . n A 1 69 PRO 69 135 135 PRO PRO A . n A 1 70 GLU 70 136 136 GLU GLU A . n A 1 71 ASP 71 137 137 ASP ASP A . n A 1 72 THR 72 138 138 THR THR A . n A 1 73 GLU 73 139 139 GLU GLU A . n A 1 74 GLY 74 140 140 GLY GLY A . n A 1 75 VAL 75 141 141 VAL VAL A . n A 1 76 LYS 76 142 142 LYS LYS A . n A 1 77 ASN 77 143 143 ASN ASN A . n A 1 78 ARG 78 144 144 ARG ARG A . n A 1 79 LEU 79 145 145 LEU LEU A . n A 1 80 LEU 80 146 146 LEU LEU A . n A 1 81 GLU 81 147 147 GLU GLU A . n A 1 82 LEU 82 148 148 LEU LEU A . n A 1 83 LEU 83 149 149 LEU LEU A . n B 1 1 MET 1 67 ? ? ? B . n B 1 2 GLN 2 68 ? ? ? B . n B 1 3 ARG 3 69 ? ? ? B . n B 1 4 PHE 4 70 ? ? ? B . n B 1 5 ASN 5 71 71 ASN ASN B . n B 1 6 PRO 6 72 72 PRO PRO B . n B 1 7 LEU 7 73 73 LEU LEU B . n B 1 8 SER 8 74 74 SER SER B . n B 1 9 LYS 9 75 75 LYS LYS B . n B 1 10 LEU 10 76 76 LEU LEU B . n B 1 11 LYS 11 77 77 LYS LYS B . n B 1 12 ARG 12 78 78 ARG ARG B . n B 1 13 ALA 13 79 79 ALA ALA B . n B 1 14 LEU 14 80 80 LEU LEU B . n B 1 15 MET 15 81 81 MET MET B . n B 1 16 ASP 16 82 82 ASP ASP B . n B 1 17 ALA 17 83 83 ALA ALA B . n B 1 18 PHE 18 84 84 PHE PHE B . n B 1 19 VAL 19 85 85 VAL VAL B . n B 1 20 LYS 20 86 86 LYS LYS B . n B 1 21 ILE 21 87 87 ILE ILE B . n B 1 22 ASP 22 88 88 ASP ASP B . n B 1 23 SER 23 89 89 SER SER B . n B 1 24 ALA 24 90 90 ALA ALA B . n B 1 25 SER 25 91 91 SER SER B . n B 1 26 HIS 26 92 92 HIS HIS B . n B 1 27 MET 27 93 93 MET MET B . n B 1 28 ILE 28 94 94 ILE ILE B . n B 1 29 VAL 29 95 95 VAL VAL B . n B 1 30 LEU 30 96 96 LEU LEU B . n B 1 31 LYS 31 97 97 LYS LYS B . n B 1 32 THR 32 98 98 THR THR B . n B 1 33 MET 33 99 99 MET MET B . n B 1 34 PRO 34 100 100 PRO PRO B . n B 1 35 GLY 35 101 101 GLY GLY B . n B 1 36 ASN 36 102 102 ASN ASN B . n B 1 37 ALA 37 103 103 ALA ALA B . n B 1 38 GLN 38 104 104 GLN GLN B . n B 1 39 ALA 39 105 105 ALA ALA B . n B 1 40 ILE 40 106 106 ILE ILE B . n B 1 41 GLY 41 107 107 GLY GLY B . n B 1 42 ALA 42 108 108 ALA ALA B . n B 1 43 LEU 43 109 109 LEU LEU B . n B 1 44 MET 44 110 110 MET MET B . n B 1 45 ASP 45 111 111 ASP ASP B . n B 1 46 ASN 46 112 112 ASN ASN B . n B 1 47 LEU 47 113 113 LEU LEU B . n B 1 48 ASP 48 114 114 ASP ASP B . n B 1 49 TRP 49 115 115 TRP TRP B . n B 1 50 ASP 50 116 116 ASP ASP B . n B 1 51 GLU 51 117 117 GLU GLU B . n B 1 52 MET 52 118 118 MET MET B . n B 1 53 MET 53 119 119 MET MET B . n B 1 54 GLY 54 120 120 GLY GLY B . n B 1 55 THR 55 121 121 THR THR B . n B 1 56 ILE 56 122 122 ILE ILE B . n B 1 57 CYS 57 123 123 CYS CYS B . n B 1 58 GLY 58 124 124 GLY GLY B . n B 1 59 ASP 59 125 125 ASP ASP B . n B 1 60 ASP 60 126 126 ASP ASP B . n B 1 61 THR 61 127 127 THR THR B . n B 1 62 ILE 62 128 128 ILE ILE B . n B 1 63 LEU 63 129 129 LEU LEU B . n B 1 64 ILE 64 130 130 ILE ILE B . n B 1 65 ILE 65 131 131 ILE ILE B . n B 1 66 CYS 66 132 132 CYS CYS B . n B 1 67 ARG 67 133 133 ARG ARG B . n B 1 68 THR 68 134 134 THR THR B . n B 1 69 PRO 69 135 135 PRO PRO B . n B 1 70 GLU 70 136 136 GLU GLU B . n B 1 71 ASP 71 137 137 ASP ASP B . n B 1 72 THR 72 138 138 THR THR B . n B 1 73 GLU 73 139 139 GLU GLU B . n B 1 74 GLY 74 140 140 GLY GLY B . n B 1 75 VAL 75 141 141 VAL VAL B . n B 1 76 LYS 76 142 142 LYS LYS B . n B 1 77 ASN 77 143 143 ASN ASN B . n B 1 78 ARG 78 144 144 ARG ARG B . n B 1 79 LEU 79 145 145 LEU LEU B . n B 1 80 LEU 80 146 146 LEU LEU B . n B 1 81 GLU 81 147 147 GLU GLU B . n B 1 82 LEU 82 148 148 LEU LEU B . n B 1 83 LEU 83 149 149 LEU LEU B . n C 1 1 MET 1 67 ? ? ? C . n C 1 2 GLN 2 68 ? ? ? C . n C 1 3 ARG 3 69 ? ? ? C . n C 1 4 PHE 4 70 ? ? ? C . n C 1 5 ASN 5 71 71 ASN ASN C . n C 1 6 PRO 6 72 72 PRO PRO C . n C 1 7 LEU 7 73 73 LEU LEU C . n C 1 8 SER 8 74 74 SER SER C . n C 1 9 LYS 9 75 75 LYS LYS C . n C 1 10 LEU 10 76 76 LEU LEU C . n C 1 11 LYS 11 77 77 LYS LYS C . n C 1 12 ARG 12 78 78 ARG ARG C . n C 1 13 ALA 13 79 79 ALA ALA C . n C 1 14 LEU 14 80 80 LEU LEU C . n C 1 15 MET 15 81 81 MET MET C . n C 1 16 ASP 16 82 82 ASP ASP C . n C 1 17 ALA 17 83 83 ALA ALA C . n C 1 18 PHE 18 84 84 PHE PHE C . n C 1 19 VAL 19 85 85 VAL VAL C . n C 1 20 LYS 20 86 86 LYS LYS C . n C 1 21 ILE 21 87 87 ILE ILE C . n C 1 22 ASP 22 88 88 ASP ASP C . n C 1 23 SER 23 89 89 SER SER C . n C 1 24 ALA 24 90 90 ALA ALA C . n C 1 25 SER 25 91 91 SER SER C . n C 1 26 HIS 26 92 92 HIS HIS C . n C 1 27 MET 27 93 93 MET MET C . n C 1 28 ILE 28 94 94 ILE ILE C . n C 1 29 VAL 29 95 95 VAL VAL C . n C 1 30 LEU 30 96 96 LEU LEU C . n C 1 31 LYS 31 97 97 LYS LYS C . n C 1 32 THR 32 98 98 THR THR C . n C 1 33 MET 33 99 99 MET MET C . n C 1 34 PRO 34 100 100 PRO PRO C . n C 1 35 GLY 35 101 101 GLY GLY C . n C 1 36 ASN 36 102 102 ASN ASN C . n C 1 37 ALA 37 103 103 ALA ALA C . n C 1 38 GLN 38 104 104 GLN GLN C . n C 1 39 ALA 39 105 105 ALA ALA C . n C 1 40 ILE 40 106 106 ILE ILE C . n C 1 41 GLY 41 107 107 GLY GLY C . n C 1 42 ALA 42 108 108 ALA ALA C . n C 1 43 LEU 43 109 109 LEU LEU C . n C 1 44 MET 44 110 110 MET MET C . n C 1 45 ASP 45 111 111 ASP ASP C . n C 1 46 ASN 46 112 112 ASN ASN C . n C 1 47 LEU 47 113 113 LEU LEU C . n C 1 48 ASP 48 114 114 ASP ASP C . n C 1 49 TRP 49 115 115 TRP TRP C . n C 1 50 ASP 50 116 116 ASP ASP C . n C 1 51 GLU 51 117 117 GLU GLU C . n C 1 52 MET 52 118 118 MET MET C . n C 1 53 MET 53 119 119 MET MET C . n C 1 54 GLY 54 120 120 GLY GLY C . n C 1 55 THR 55 121 121 THR THR C . n C 1 56 ILE 56 122 122 ILE ILE C . n C 1 57 CYS 57 123 123 CYS CYS C . n C 1 58 GLY 58 124 124 GLY GLY C . n C 1 59 ASP 59 125 125 ASP ASP C . n C 1 60 ASP 60 126 126 ASP ASP C . n C 1 61 THR 61 127 127 THR THR C . n C 1 62 ILE 62 128 128 ILE ILE C . n C 1 63 LEU 63 129 129 LEU LEU C . n C 1 64 ILE 64 130 130 ILE ILE C . n C 1 65 ILE 65 131 131 ILE ILE C . n C 1 66 CYS 66 132 132 CYS CYS C . n C 1 67 ARG 67 133 133 ARG ARG C . n C 1 68 THR 68 134 134 THR THR C . n C 1 69 PRO 69 135 135 PRO PRO C . n C 1 70 GLU 70 136 136 GLU GLU C . n C 1 71 ASP 71 137 137 ASP ASP C . n C 1 72 THR 72 138 138 THR THR C . n C 1 73 GLU 73 139 139 GLU GLU C . n C 1 74 GLY 74 140 140 GLY GLY C . n C 1 75 VAL 75 141 141 VAL VAL C . n C 1 76 LYS 76 142 142 LYS LYS C . n C 1 77 ASN 77 143 143 ASN ASN C . n C 1 78 ARG 78 144 144 ARG ARG C . n C 1 79 LEU 79 145 145 LEU LEU C . n C 1 80 LEU 80 146 146 LEU LEU C . n C 1 81 GLU 81 147 147 GLU GLU C . n C 1 82 LEU 82 148 148 LEU LEU C . n C 1 83 LEU 83 149 149 LEU LEU C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ARG 1 201 201 ARG ARG B . E 2 ARG 1 202 202 ARG ARG B . F 2 ARG 1 203 203 ARG ARG B . G 2 ARG 1 204 204 ARG ARG B . H 2 ARG 1 205 205 ARG ARG B . I 3 HOH 1 150 2 HOH HOH A . I 3 HOH 2 151 5 HOH HOH A . I 3 HOH 3 152 9 HOH HOH A . I 3 HOH 4 153 13 HOH HOH A . I 3 HOH 5 154 15 HOH HOH A . I 3 HOH 6 155 17 HOH HOH A . I 3 HOH 7 156 18 HOH HOH A . I 3 HOH 8 157 19 HOH HOH A . I 3 HOH 9 158 21 HOH HOH A . I 3 HOH 10 159 23 HOH HOH A . I 3 HOH 11 160 29 HOH HOH A . I 3 HOH 12 161 32 HOH HOH A . I 3 HOH 13 162 37 HOH HOH A . I 3 HOH 14 163 39 HOH HOH A . I 3 HOH 15 164 41 HOH HOH A . I 3 HOH 16 165 47 HOH HOH A . I 3 HOH 17 166 48 HOH HOH A . I 3 HOH 18 167 53 HOH HOH A . I 3 HOH 19 168 59 HOH HOH A . I 3 HOH 20 169 60 HOH HOH A . I 3 HOH 21 170 66 HOH HOH A . I 3 HOH 22 171 67 HOH HOH A . I 3 HOH 23 172 68 HOH HOH A . I 3 HOH 24 173 69 HOH HOH A . I 3 HOH 25 174 73 HOH HOH A . I 3 HOH 26 175 76 HOH HOH A . I 3 HOH 27 176 80 HOH HOH A . I 3 HOH 28 177 81 HOH HOH A . I 3 HOH 29 178 82 HOH HOH A . I 3 HOH 30 179 83 HOH HOH A . I 3 HOH 31 180 84 HOH HOH A . I 3 HOH 32 181 86 HOH HOH A . I 3 HOH 33 182 88 HOH HOH A . I 3 HOH 34 183 90 HOH HOH A . I 3 HOH 35 184 91 HOH HOH A . I 3 HOH 36 185 94 HOH HOH A . I 3 HOH 37 186 98 HOH HOH A . I 3 HOH 38 187 104 HOH HOH A . I 3 HOH 39 188 105 HOH HOH A . I 3 HOH 40 189 108 HOH HOH A . I 3 HOH 41 190 110 HOH HOH A . I 3 HOH 42 191 112 HOH HOH A . I 3 HOH 43 192 114 HOH HOH A . I 3 HOH 44 193 115 HOH HOH A . I 3 HOH 45 194 123 HOH HOH A . I 3 HOH 46 195 125 HOH HOH A . I 3 HOH 47 196 135 HOH HOH A . I 3 HOH 48 197 140 HOH HOH A . I 3 HOH 49 198 143 HOH HOH A . I 3 HOH 50 199 146 HOH HOH A . I 3 HOH 51 200 147 HOH HOH A . I 3 HOH 52 201 152 HOH HOH A . I 3 HOH 53 202 153 HOH HOH A . I 3 HOH 54 203 154 HOH HOH A . I 3 HOH 55 204 155 HOH HOH A . I 3 HOH 56 205 156 HOH HOH A . I 3 HOH 57 206 157 HOH HOH A . I 3 HOH 58 207 158 HOH HOH A . I 3 HOH 59 208 159 HOH HOH A . I 3 HOH 60 209 164 HOH HOH A . I 3 HOH 61 210 167 HOH HOH A . I 3 HOH 62 211 168 HOH HOH A . J 3 HOH 1 206 1 HOH HOH B . J 3 HOH 2 207 3 HOH HOH B . J 3 HOH 3 208 4 HOH HOH B . J 3 HOH 4 209 7 HOH HOH B . J 3 HOH 5 210 11 HOH HOH B . J 3 HOH 6 211 14 HOH HOH B . J 3 HOH 7 212 16 HOH HOH B . J 3 HOH 8 213 22 HOH HOH B . J 3 HOH 9 214 25 HOH HOH B . J 3 HOH 10 215 27 HOH HOH B . J 3 HOH 11 216 28 HOH HOH B . J 3 HOH 12 217 30 HOH HOH B . J 3 HOH 13 218 31 HOH HOH B . J 3 HOH 14 219 34 HOH HOH B . J 3 HOH 15 220 36 HOH HOH B . J 3 HOH 16 221 38 HOH HOH B . J 3 HOH 17 222 43 HOH HOH B . J 3 HOH 18 223 44 HOH HOH B . J 3 HOH 19 224 46 HOH HOH B . J 3 HOH 20 225 49 HOH HOH B . J 3 HOH 21 226 54 HOH HOH B . J 3 HOH 22 227 61 HOH HOH B . J 3 HOH 23 228 62 HOH HOH B . J 3 HOH 24 229 63 HOH HOH B . J 3 HOH 25 230 65 HOH HOH B . J 3 HOH 26 231 70 HOH HOH B . J 3 HOH 27 232 74 HOH HOH B . J 3 HOH 28 233 75 HOH HOH B . J 3 HOH 29 234 77 HOH HOH B . J 3 HOH 30 235 78 HOH HOH B . J 3 HOH 31 236 79 HOH HOH B . J 3 HOH 32 237 87 HOH HOH B . J 3 HOH 33 238 89 HOH HOH B . J 3 HOH 34 239 92 HOH HOH B . J 3 HOH 35 240 93 HOH HOH B . J 3 HOH 36 241 96 HOH HOH B . J 3 HOH 37 242 97 HOH HOH B . J 3 HOH 38 243 100 HOH HOH B . J 3 HOH 39 244 106 HOH HOH B . J 3 HOH 40 245 107 HOH HOH B . J 3 HOH 41 246 119 HOH HOH B . J 3 HOH 42 247 120 HOH HOH B . J 3 HOH 43 248 121 HOH HOH B . J 3 HOH 44 249 122 HOH HOH B . J 3 HOH 45 250 124 HOH HOH B . J 3 HOH 46 251 126 HOH HOH B . J 3 HOH 47 252 128 HOH HOH B . J 3 HOH 48 253 133 HOH HOH B . J 3 HOH 49 254 134 HOH HOH B . J 3 HOH 50 255 136 HOH HOH B . J 3 HOH 51 256 137 HOH HOH B . J 3 HOH 52 257 142 HOH HOH B . J 3 HOH 53 258 145 HOH HOH B . J 3 HOH 54 259 149 HOH HOH B . J 3 HOH 55 260 150 HOH HOH B . J 3 HOH 56 261 161 HOH HOH B . J 3 HOH 57 262 162 HOH HOH B . J 3 HOH 58 263 163 HOH HOH B . J 3 HOH 59 264 165 HOH HOH B . J 3 HOH 60 265 166 HOH HOH B . J 3 HOH 61 266 169 HOH HOH B . K 3 HOH 1 150 6 HOH HOH C . K 3 HOH 2 151 8 HOH HOH C . K 3 HOH 3 152 10 HOH HOH C . K 3 HOH 4 153 12 HOH HOH C . K 3 HOH 5 154 20 HOH HOH C . K 3 HOH 6 155 24 HOH HOH C . K 3 HOH 7 156 26 HOH HOH C . K 3 HOH 8 157 33 HOH HOH C . K 3 HOH 9 158 35 HOH HOH C . K 3 HOH 10 159 40 HOH HOH C . K 3 HOH 11 160 42 HOH HOH C . K 3 HOH 12 161 45 HOH HOH C . K 3 HOH 13 162 50 HOH HOH C . K 3 HOH 14 163 51 HOH HOH C . K 3 HOH 15 164 52 HOH HOH C . K 3 HOH 16 165 55 HOH HOH C . K 3 HOH 17 166 56 HOH HOH C . K 3 HOH 18 167 57 HOH HOH C . K 3 HOH 19 168 58 HOH HOH C . K 3 HOH 20 169 64 HOH HOH C . K 3 HOH 21 170 71 HOH HOH C . K 3 HOH 22 171 72 HOH HOH C . K 3 HOH 23 172 85 HOH HOH C . K 3 HOH 24 173 95 HOH HOH C . K 3 HOH 25 174 99 HOH HOH C . K 3 HOH 26 175 101 HOH HOH C . K 3 HOH 27 176 102 HOH HOH C . K 3 HOH 28 177 103 HOH HOH C . K 3 HOH 29 178 109 HOH HOH C . K 3 HOH 30 179 111 HOH HOH C . K 3 HOH 31 180 113 HOH HOH C . K 3 HOH 32 181 116 HOH HOH C . K 3 HOH 33 182 117 HOH HOH C . K 3 HOH 34 183 118 HOH HOH C . K 3 HOH 35 184 127 HOH HOH C . K 3 HOH 36 185 129 HOH HOH C . K 3 HOH 37 186 130 HOH HOH C . K 3 HOH 38 187 131 HOH HOH C . K 3 HOH 39 188 132 HOH HOH C . K 3 HOH 40 189 138 HOH HOH C . K 3 HOH 41 190 139 HOH HOH C . K 3 HOH 42 191 141 HOH HOH C . K 3 HOH 43 192 144 HOH HOH C . K 3 HOH 44 193 148 HOH HOH C . K 3 HOH 45 194 151 HOH HOH C . K 3 HOH 46 195 160 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.4635000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 183 ? I HOH . 2 1 B HOH 244 ? J HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 3 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 4 SCALA . ? ? ? ? 'data scaling' ? ? ? 5 AMoRE . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 85 ? ? -120.90 -51.96 2 1 SER A 91 ? ? 48.19 -113.42 3 1 VAL B 85 ? ? -121.97 -50.43 4 1 SER B 91 ? ? 55.90 -130.81 5 1 SER C 91 ? ? 49.94 -118.56 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B ARG 204 ? N ? G ARG 1 N 2 1 N 1 B ARG 204 ? CA ? G ARG 1 CA 3 1 N 1 B ARG 204 ? C ? G ARG 1 C 4 1 N 1 B ARG 204 ? O ? G ARG 1 O 5 1 N 1 B ARG 204 ? CB ? G ARG 1 CB 6 1 N 1 B ARG 204 ? CG ? G ARG 1 CG 7 1 N 1 B ARG 204 ? CD ? G ARG 1 CD 8 1 N 1 B ARG 204 ? OXT ? G ARG 1 OXT 9 1 N 1 B ARG 205 ? N ? H ARG 1 N 10 1 N 1 B ARG 205 ? CA ? H ARG 1 CA 11 1 N 1 B ARG 205 ? C ? H ARG 1 C 12 1 N 1 B ARG 205 ? O ? H ARG 1 O 13 1 N 1 B ARG 205 ? CB ? H ARG 1 CB 14 1 N 1 B ARG 205 ? CG ? H ARG 1 CG 15 1 N 1 B ARG 205 ? CD ? H ARG 1 CD 16 1 N 1 B ARG 205 ? OXT ? H ARG 1 OXT # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 67 ? A MET 1 2 1 Y 1 B MET 67 ? B MET 1 3 1 Y 1 B GLN 68 ? B GLN 2 4 1 Y 1 B ARG 69 ? B ARG 3 5 1 Y 1 B PHE 70 ? B PHE 4 6 1 Y 1 C MET 67 ? C MET 1 7 1 Y 1 C GLN 68 ? C GLN 2 8 1 Y 1 C ARG 69 ? C ARG 3 9 1 Y 1 C PHE 70 ? C PHE 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 VAL N N N N 348 VAL CA C N S 349 VAL C C N N 350 VAL O O N N 351 VAL CB C N N 352 VAL CG1 C N N 353 VAL CG2 C N N 354 VAL OXT O N N 355 VAL H H N N 356 VAL H2 H N N 357 VAL HA H N N 358 VAL HB H N N 359 VAL HG11 H N N 360 VAL HG12 H N N 361 VAL HG13 H N N 362 VAL HG21 H N N 363 VAL HG22 H N N 364 VAL HG23 H N N 365 VAL HXT H N N 366 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 VAL N CA sing N N 334 VAL N H sing N N 335 VAL N H2 sing N N 336 VAL CA C sing N N 337 VAL CA CB sing N N 338 VAL CA HA sing N N 339 VAL C O doub N N 340 VAL C OXT sing N N 341 VAL CB CG1 sing N N 342 VAL CB CG2 sing N N 343 VAL CB HB sing N N 344 VAL CG1 HG11 sing N N 345 VAL CG1 HG12 sing N N 346 VAL CG1 HG13 sing N N 347 VAL CG2 HG21 sing N N 348 VAL CG2 HG22 sing N N 349 VAL CG2 HG23 sing N N 350 VAL OXT HXT sing N N 351 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ARGININE ARG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1B4B _pdbx_initial_refinement_model.details 'pdb entry 1B4B, Trimer of C-terminal domains from B. steareothermophilus' #