data_2P63 # _entry.id 2P63 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2P63 RCSB RCSB042012 WWPDB D_1000042012 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2P63 _pdbx_database_status.recvd_initial_deposition_date 2007-03-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Orlicky, S.' 1 'Neculai, D.' 2 'Ceccarelli, D.' 3 # _citation.id primary _citation.title 'Suprafacial orientation of the SCFCdc4 dimer accommodates multiple geometries for substrate ubiquitination.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 129 _citation.page_first 1165 _citation.page_last 1176 _citation.year 2007 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17574027 _citation.pdbx_database_id_DOI 10.1016/j.cell.2007.04.042 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tang, X.' 1 primary 'Orlicky, S.' 2 primary 'Lin, Z.' 3 primary 'Willems, A.' 4 primary 'Neculai, D.' 5 primary 'Ceccarelli, D.' 6 primary 'Mercurio, F.' 7 primary 'Shilton, B.H.' 8 primary 'Sicheri, F.' 9 primary 'Tyers, M.' 10 # _cell.entry_id 2P63 _cell.length_a 37.816 _cell.length_b 37.816 _cell.length_c 298.118 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P63 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cell division control protein 4' 6429.942 4 ? ? 'D Domain' ? 2 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'F-box protein CDC4, E3 ubiquitin ligase complex SCF subunit CDC4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GA(MSE)GSPEYLSDEIFSAINNNLPHAYFKNLLFRLVAN(MSE)DRSELSDLGTLIKDNLKRD' _entity_poly.pdbx_seq_one_letter_code_can GAMGSPEYLSDEIFSAINNNLPHAYFKNLLFRLVANMDRSELSDLGTLIKDNLKRD _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MSE n 1 4 GLY n 1 5 SER n 1 6 PRO n 1 7 GLU n 1 8 TYR n 1 9 LEU n 1 10 SER n 1 11 ASP n 1 12 GLU n 1 13 ILE n 1 14 PHE n 1 15 SER n 1 16 ALA n 1 17 ILE n 1 18 ASN n 1 19 ASN n 1 20 ASN n 1 21 LEU n 1 22 PRO n 1 23 HIS n 1 24 ALA n 1 25 TYR n 1 26 PHE n 1 27 LYS n 1 28 ASN n 1 29 LEU n 1 30 LEU n 1 31 PHE n 1 32 ARG n 1 33 LEU n 1 34 VAL n 1 35 ALA n 1 36 ASN n 1 37 MSE n 1 38 ASP n 1 39 ARG n 1 40 SER n 1 41 GLU n 1 42 LEU n 1 43 SER n 1 44 ASP n 1 45 LEU n 1 46 GLY n 1 47 THR n 1 48 LEU n 1 49 ILE n 1 50 LYS n 1 51 ASP n 1 52 ASN n 1 53 LEU n 1 54 LYS n 1 55 ARG n 1 56 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;baker's yeast ; _entity_src_gen.gene_src_genus Saccharomyces _entity_src_gen.pdbx_gene_src_gene CDC4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CDC4_YEAST _struct_ref.pdbx_db_accession P07834 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SPEYLSDEIFSAINNNLPHAYFKNLLFRLVANMDRSELSDLGTLIKDNLKRD _struct_ref.pdbx_align_begin 222 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2P63 A 5 ? 56 ? P07834 222 ? 273 ? 222 273 2 1 2P63 B 5 ? 56 ? P07834 222 ? 273 ? 222 273 3 1 2P63 C 5 ? 56 ? P07834 222 ? 273 ? 222 273 4 1 2P63 D 5 ? 56 ? P07834 222 ? 273 ? 222 273 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2P63 GLY A 1 ? UNP P07834 ? ? 'CLONING ARTIFACT' 218 1 1 2P63 ALA A 2 ? UNP P07834 ? ? 'CLONING ARTIFACT' 219 2 1 2P63 MSE A 3 ? UNP P07834 ? ? 'CLONING ARTIFACT' 220 3 1 2P63 GLY A 4 ? UNP P07834 ? ? 'CLONING ARTIFACT' 221 4 1 2P63 MSE A 37 ? UNP P07834 ? ? 'MODIFIED RESIDUE' 254 5 2 2P63 GLY B 1 ? UNP P07834 ? ? 'CLONING ARTIFACT' 218 6 2 2P63 ALA B 2 ? UNP P07834 ? ? 'CLONING ARTIFACT' 219 7 2 2P63 MSE B 3 ? UNP P07834 ? ? 'CLONING ARTIFACT' 220 8 2 2P63 GLY B 4 ? UNP P07834 ? ? 'CLONING ARTIFACT' 221 9 2 2P63 MSE B 37 ? UNP P07834 ? ? 'MODIFIED RESIDUE' 254 10 3 2P63 GLY C 1 ? UNP P07834 ? ? 'CLONING ARTIFACT' 218 11 3 2P63 ALA C 2 ? UNP P07834 ? ? 'CLONING ARTIFACT' 219 12 3 2P63 MSE C 3 ? UNP P07834 ? ? 'CLONING ARTIFACT' 220 13 3 2P63 GLY C 4 ? UNP P07834 ? ? 'CLONING ARTIFACT' 221 14 3 2P63 MSE C 37 ? UNP P07834 ? ? 'MODIFIED RESIDUE' 254 15 4 2P63 GLY D 1 ? UNP P07834 ? ? 'CLONING ARTIFACT' 218 16 4 2P63 ALA D 2 ? UNP P07834 ? ? 'CLONING ARTIFACT' 219 17 4 2P63 MSE D 3 ? UNP P07834 ? ? 'CLONING ARTIFACT' 220 18 4 2P63 GLY D 4 ? UNP P07834 ? ? 'CLONING ARTIFACT' 221 19 4 2P63 MSE D 37 ? UNP P07834 ? ? 'MODIFIED RESIDUE' 254 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2P63 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 49.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '50%MPD, 100 mM (NH4)H2PO4 ph 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC _diffrn_detector.pdbx_collection_date 2005-06-29 _diffrn_detector.details 'Rosenbaum-Rock double-crystal monochromator: Water cooled; sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9788 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9788 # _reflns.entry_id 2P63 _reflns.observed_criterion_sigma_F 8.4 _reflns.observed_criterion_sigma_I 8.4 _reflns.d_resolution_high 2.67 _reflns.d_resolution_low 49.69 _reflns.number_all 6882 _reflns.number_obs 6756 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.0702 _reflns.pdbx_Rsym_value 0.0349 _reflns.pdbx_netI_over_sigmaI 21.15 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.81 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.67 _reflns_shell.d_res_low 2.73 _reflns_shell.percent_possible_all 98.0 _reflns_shell.Rmerge_I_obs 0.1712 _reflns_shell.pdbx_Rsym_value 0.1228 _reflns_shell.meanI_over_sigI_obs 8.47 _reflns_shell.pdbx_redundancy 6.95 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 383 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2P63 _refine.ls_number_reflns_obs 6284 _refine.ls_number_reflns_all 6284 _refine.pdbx_ls_sigma_I 8.47 _refine.pdbx_ls_sigma_F 8.47 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 49.69 _refine.ls_d_res_high 2.67 _refine.ls_percent_reflns_obs 99.08 _refine.ls_R_factor_obs 0.22396 _refine.ls_R_factor_all 0.22396 _refine.ls_R_factor_R_work 0.21974 _refine.ls_R_factor_R_free 0.27851 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.0 _refine.ls_number_reflns_R_free 472 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.923 _refine.correlation_coeff_Fo_to_Fc_free 0.871 _refine.B_iso_mean 25.025 _refine.aniso_B[1][1] 3.17 _refine.aniso_B[2][2] 3.17 _refine.aniso_B[3][3] -4.76 _refine.aniso_B[1][2] 1.59 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.406 _refine.overall_SU_ML 0.316 _refine.overall_SU_B 25.966 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1678 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 1715 _refine_hist.d_res_high 2.67 _refine_hist.d_res_low 49.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1751 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.270 1.973 ? 2364 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.045 5.000 ? 211 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.380 24.516 ? 93 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22.595 15.000 ? 315 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.917 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.093 0.200 ? 261 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1334 'X-RAY DIFFRACTION' ? r_nbd_refined 0.221 0.200 ? 769 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 1205 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.148 0.200 ? 79 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.169 0.200 ? 40 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.148 0.200 ? 8 'X-RAY DIFFRACTION' ? r_mcbond_it 0.775 1.500 ? 1081 'X-RAY DIFFRACTION' ? r_mcangle_it 1.320 2.000 ? 1698 'X-RAY DIFFRACTION' ? r_scbond_it 1.264 3.000 ? 733 'X-RAY DIFFRACTION' ? r_scangle_it 2.044 4.500 ? 665 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 360 0.02 0.05 'tight positional' 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 B 377 0.01 0.05 'tight positional' 2 'X-RAY DIFFRACTION' 2 ? ? ? 1 A 360 0.03 0.50 'tight thermal' 1 'X-RAY DIFFRACTION' 3 ? ? ? 1 B 377 0.03 0.50 'tight thermal' 2 'X-RAY DIFFRACTION' 4 ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.670 _refine_ls_shell.d_res_low 2.739 _refine_ls_shell.number_reflns_R_work 473 _refine_ls_shell.R_factor_R_work 0.273 _refine_ls_shell.percent_reflns_obs 98.63 _refine_ls_shell.R_factor_R_free 0.383 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 C 2 1 B 2 2 D # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 227 A 271 1 1 A SER 10 ? A LYS 54 ? 1 ? 2 C 227 C 271 1 1 C SER 10 ? C LYS 54 ? 1 ? 1 B 227 B 271 1 1 B SER 10 ? B LYS 54 ? 2 ? 2 D 227 D 271 1 1 D SER 10 ? D LYS 54 ? 2 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? # _struct.entry_id 2P63 _struct.title 'Suprafacial orientation of the SCFCdc4 dimer accommodates multiple geometries for substrate ubiquitination' _struct.pdbx_descriptor 'Cell division control protein 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P63 _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'ubiquitination, helix bundle, scf complex, CELL CYCLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 10 ? ASN A 18 ? SER A 227 ASN A 235 1 ? 9 HELX_P HELX_P2 2 ASN A 19 ? LEU A 21 ? ASN A 236 LEU A 238 5 ? 3 HELX_P HELX_P3 3 PRO A 22 ? HIS A 23 ? PRO A 239 HIS A 240 5 ? 2 HELX_P HELX_P4 4 ALA A 24 ? MSE A 37 ? ALA A 241 MSE A 254 1 ? 14 HELX_P HELX_P5 5 ASP A 38 ? ARG A 55 ? ASP A 255 ARG A 272 1 ? 18 HELX_P HELX_P6 6 SER B 10 ? ASN B 19 ? SER B 227 ASN B 236 1 ? 10 HELX_P HELX_P7 7 ASN B 20 ? LEU B 21 ? ASN B 237 LEU B 238 5 ? 2 HELX_P HELX_P8 8 PRO B 22 ? PHE B 26 ? PRO B 239 PHE B 243 5 ? 5 HELX_P HELX_P9 9 ASN B 28 ? MSE B 37 ? ASN B 245 MSE B 254 1 ? 10 HELX_P HELX_P10 10 ASP B 38 ? LEU B 53 ? ASP B 255 LEU B 270 1 ? 16 HELX_P HELX_P11 11 SER C 10 ? ASN C 20 ? SER C 227 ASN C 237 1 ? 11 HELX_P HELX_P12 12 ALA C 24 ? ASN C 36 ? ALA C 241 ASN C 253 1 ? 13 HELX_P HELX_P13 13 ASP C 38 ? LYS C 54 ? ASP C 255 LYS C 271 1 ? 17 HELX_P HELX_P14 14 SER D 10 ? ASN D 20 ? SER D 227 ASN D 237 1 ? 11 HELX_P HELX_P15 15 LEU D 21 ? LYS D 27 ? LEU D 238 LYS D 244 5 ? 7 HELX_P HELX_P16 16 ASN D 28 ? ASN D 36 ? ASN D 245 ASN D 253 1 ? 9 HELX_P HELX_P17 17 ASP D 38 ? ARG D 55 ? ASP D 255 ARG D 272 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ASN 36 C ? ? ? 1_555 A MSE 37 N ? ? A ASN 253 A MSE 254 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 37 C ? ? ? 1_555 A ASP 38 N ? ? A MSE 254 A ASP 255 1_555 ? ? ? ? ? ? ? 1.335 ? covale3 covale ? ? B ASN 36 C ? ? ? 1_555 B MSE 37 N ? ? B ASN 253 B MSE 254 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? B MSE 37 C ? ? ? 1_555 B ASP 38 N ? ? B MSE 254 B ASP 255 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? C ASN 36 C ? ? ? 1_555 C MSE 37 N ? ? C ASN 253 C MSE 254 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? C MSE 37 C ? ? ? 1_555 C ASP 38 N ? ? C MSE 254 C ASP 255 1_555 ? ? ? ? ? ? ? 1.333 ? covale7 covale ? ? D ASN 36 C ? ? ? 1_555 D MSE 37 N ? ? D ASN 253 D MSE 254 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? D MSE 37 C ? ? ? 1_555 D ASP 38 N ? ? D MSE 254 D ASP 255 1_555 ? ? ? ? ? ? ? 1.326 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2P63 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2P63 _atom_sites.fract_transf_matrix[1][1] 0.026444 _atom_sites.fract_transf_matrix[1][2] 0.015267 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030535 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003354 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 218 ? ? ? A . n A 1 2 ALA 2 219 ? ? ? A . n A 1 3 MSE 3 220 ? ? ? A . n A 1 4 GLY 4 221 221 GLY GLY A . n A 1 5 SER 5 222 222 SER SER A . n A 1 6 PRO 6 223 223 PRO PRO A . n A 1 7 GLU 7 224 224 GLU GLU A . n A 1 8 TYR 8 225 225 TYR TYR A . n A 1 9 LEU 9 226 226 LEU LEU A . n A 1 10 SER 10 227 227 SER SER A . n A 1 11 ASP 11 228 228 ASP ASP A . n A 1 12 GLU 12 229 229 GLU GLU A . n A 1 13 ILE 13 230 230 ILE ILE A . n A 1 14 PHE 14 231 231 PHE PHE A . n A 1 15 SER 15 232 232 SER SER A . n A 1 16 ALA 16 233 233 ALA ALA A . n A 1 17 ILE 17 234 234 ILE ILE A . n A 1 18 ASN 18 235 235 ASN ASN A . n A 1 19 ASN 19 236 236 ASN ASN A . n A 1 20 ASN 20 237 237 ASN ASN A . n A 1 21 LEU 21 238 238 LEU LEU A . n A 1 22 PRO 22 239 239 PRO PRO A . n A 1 23 HIS 23 240 240 HIS HIS A . n A 1 24 ALA 24 241 241 ALA ALA A . n A 1 25 TYR 25 242 242 TYR TYR A . n A 1 26 PHE 26 243 243 PHE PHE A . n A 1 27 LYS 27 244 244 LYS LYS A . n A 1 28 ASN 28 245 245 ASN ASN A . n A 1 29 LEU 29 246 246 LEU LEU A . n A 1 30 LEU 30 247 247 LEU LEU A . n A 1 31 PHE 31 248 248 PHE PHE A . n A 1 32 ARG 32 249 249 ARG ARG A . n A 1 33 LEU 33 250 250 LEU LEU A . n A 1 34 VAL 34 251 251 VAL VAL A . n A 1 35 ALA 35 252 252 ALA ALA A . n A 1 36 ASN 36 253 253 ASN ASN A . n A 1 37 MSE 37 254 254 MSE MSE A . n A 1 38 ASP 38 255 255 ASP ASP A . n A 1 39 ARG 39 256 256 ARG ARG A . n A 1 40 SER 40 257 257 SER SER A . n A 1 41 GLU 41 258 258 GLU GLU A . n A 1 42 LEU 42 259 259 LEU LEU A . n A 1 43 SER 43 260 260 SER SER A . n A 1 44 ASP 44 261 261 ASP ASP A . n A 1 45 LEU 45 262 262 LEU LEU A . n A 1 46 GLY 46 263 263 GLY GLY A . n A 1 47 THR 47 264 264 THR THR A . n A 1 48 LEU 48 265 265 LEU LEU A . n A 1 49 ILE 49 266 266 ILE ILE A . n A 1 50 LYS 50 267 267 LYS LYS A . n A 1 51 ASP 51 268 268 ASP ASP A . n A 1 52 ASN 52 269 269 ASN ASN A . n A 1 53 LEU 53 270 270 LEU LEU A . n A 1 54 LYS 54 271 271 LYS LYS A . n A 1 55 ARG 55 272 272 ARG ARG A . n A 1 56 ASP 56 273 ? ? ? A . n B 1 1 GLY 1 218 ? ? ? B . n B 1 2 ALA 2 219 ? ? ? B . n B 1 3 MSE 3 220 ? ? ? B . n B 1 4 GLY 4 221 ? ? ? B . n B 1 5 SER 5 222 222 SER SER B . n B 1 6 PRO 6 223 223 PRO PRO B . n B 1 7 GLU 7 224 224 GLU GLU B . n B 1 8 TYR 8 225 225 TYR TYR B . n B 1 9 LEU 9 226 226 LEU LEU B . n B 1 10 SER 10 227 227 SER SER B . n B 1 11 ASP 11 228 228 ASP ASP B . n B 1 12 GLU 12 229 229 GLU GLU B . n B 1 13 ILE 13 230 230 ILE ILE B . n B 1 14 PHE 14 231 231 PHE PHE B . n B 1 15 SER 15 232 232 SER SER B . n B 1 16 ALA 16 233 233 ALA ALA B . n B 1 17 ILE 17 234 234 ILE ILE B . n B 1 18 ASN 18 235 235 ASN ASN B . n B 1 19 ASN 19 236 236 ASN ASN B . n B 1 20 ASN 20 237 237 ASN ASN B . n B 1 21 LEU 21 238 238 LEU LEU B . n B 1 22 PRO 22 239 239 PRO PRO B . n B 1 23 HIS 23 240 240 HIS HIS B . n B 1 24 ALA 24 241 241 ALA ALA B . n B 1 25 TYR 25 242 242 TYR TYR B . n B 1 26 PHE 26 243 243 PHE PHE B . n B 1 27 LYS 27 244 244 LYS LYS B . n B 1 28 ASN 28 245 245 ASN ASN B . n B 1 29 LEU 29 246 246 LEU LEU B . n B 1 30 LEU 30 247 247 LEU LEU B . n B 1 31 PHE 31 248 248 PHE PHE B . n B 1 32 ARG 32 249 249 ARG ARG B . n B 1 33 LEU 33 250 250 LEU LEU B . n B 1 34 VAL 34 251 251 VAL VAL B . n B 1 35 ALA 35 252 252 ALA ALA B . n B 1 36 ASN 36 253 253 ASN ASN B . n B 1 37 MSE 37 254 254 MSE MSE B . n B 1 38 ASP 38 255 255 ASP ASP B . n B 1 39 ARG 39 256 256 ARG ARG B . n B 1 40 SER 40 257 257 SER SER B . n B 1 41 GLU 41 258 258 GLU GLU B . n B 1 42 LEU 42 259 259 LEU LEU B . n B 1 43 SER 43 260 260 SER SER B . n B 1 44 ASP 44 261 261 ASP ASP B . n B 1 45 LEU 45 262 262 LEU LEU B . n B 1 46 GLY 46 263 263 GLY GLY B . n B 1 47 THR 47 264 264 THR THR B . n B 1 48 LEU 48 265 265 LEU LEU B . n B 1 49 ILE 49 266 266 ILE ILE B . n B 1 50 LYS 50 267 267 LYS LYS B . n B 1 51 ASP 51 268 268 ASP ASP B . n B 1 52 ASN 52 269 269 ASN ASN B . n B 1 53 LEU 53 270 270 LEU LEU B . n B 1 54 LYS 54 271 271 LYS LYS B . n B 1 55 ARG 55 272 272 ARG ARG B . n B 1 56 ASP 56 273 ? ? ? B . n C 1 1 GLY 1 218 ? ? ? C . n C 1 2 ALA 2 219 ? ? ? C . n C 1 3 MSE 3 220 ? ? ? C . n C 1 4 GLY 4 221 221 GLY GLY C . n C 1 5 SER 5 222 222 SER SER C . n C 1 6 PRO 6 223 223 PRO PRO C . n C 1 7 GLU 7 224 224 GLU GLU C . n C 1 8 TYR 8 225 225 TYR TYR C . n C 1 9 LEU 9 226 226 LEU LEU C . n C 1 10 SER 10 227 227 SER SER C . n C 1 11 ASP 11 228 228 ASP ASP C . n C 1 12 GLU 12 229 229 GLU GLU C . n C 1 13 ILE 13 230 230 ILE ILE C . n C 1 14 PHE 14 231 231 PHE PHE C . n C 1 15 SER 15 232 232 SER SER C . n C 1 16 ALA 16 233 233 ALA ALA C . n C 1 17 ILE 17 234 234 ILE ILE C . n C 1 18 ASN 18 235 235 ASN ASN C . n C 1 19 ASN 19 236 236 ASN ASN C . n C 1 20 ASN 20 237 237 ASN ASN C . n C 1 21 LEU 21 238 238 LEU LEU C . n C 1 22 PRO 22 239 239 PRO PRO C . n C 1 23 HIS 23 240 240 HIS HIS C . n C 1 24 ALA 24 241 241 ALA ALA C . n C 1 25 TYR 25 242 242 TYR TYR C . n C 1 26 PHE 26 243 243 PHE PHE C . n C 1 27 LYS 27 244 244 LYS LYS C . n C 1 28 ASN 28 245 245 ASN ASN C . n C 1 29 LEU 29 246 246 LEU LEU C . n C 1 30 LEU 30 247 247 LEU LEU C . n C 1 31 PHE 31 248 248 PHE PHE C . n C 1 32 ARG 32 249 249 ARG ARG C . n C 1 33 LEU 33 250 250 LEU LEU C . n C 1 34 VAL 34 251 251 VAL VAL C . n C 1 35 ALA 35 252 252 ALA ALA C . n C 1 36 ASN 36 253 253 ASN ASN C . n C 1 37 MSE 37 254 254 MSE MSE C . n C 1 38 ASP 38 255 255 ASP ASP C . n C 1 39 ARG 39 256 256 ARG ARG C . n C 1 40 SER 40 257 257 SER SER C . n C 1 41 GLU 41 258 258 GLU GLU C . n C 1 42 LEU 42 259 259 LEU LEU C . n C 1 43 SER 43 260 260 SER SER C . n C 1 44 ASP 44 261 261 ASP ASP C . n C 1 45 LEU 45 262 262 LEU LEU C . n C 1 46 GLY 46 263 263 GLY GLY C . n C 1 47 THR 47 264 264 THR THR C . n C 1 48 LEU 48 265 265 LEU LEU C . n C 1 49 ILE 49 266 266 ILE ILE C . n C 1 50 LYS 50 267 267 LYS LYS C . n C 1 51 ASP 51 268 268 ASP ASP C . n C 1 52 ASN 52 269 269 ASN ASN C . n C 1 53 LEU 53 270 270 LEU LEU C . n C 1 54 LYS 54 271 271 LYS LYS C . n C 1 55 ARG 55 272 272 ARG ARG C . n C 1 56 ASP 56 273 273 ASP ASP C . n D 1 1 GLY 1 218 ? ? ? D . n D 1 2 ALA 2 219 ? ? ? D . n D 1 3 MSE 3 220 ? ? ? D . n D 1 4 GLY 4 221 ? ? ? D . n D 1 5 SER 5 222 ? ? ? D . n D 1 6 PRO 6 223 223 PRO PRO D . n D 1 7 GLU 7 224 224 GLU GLU D . n D 1 8 TYR 8 225 225 TYR TYR D . n D 1 9 LEU 9 226 226 LEU LEU D . n D 1 10 SER 10 227 227 SER SER D . n D 1 11 ASP 11 228 228 ASP ASP D . n D 1 12 GLU 12 229 229 GLU GLU D . n D 1 13 ILE 13 230 230 ILE ILE D . n D 1 14 PHE 14 231 231 PHE PHE D . n D 1 15 SER 15 232 232 SER SER D . n D 1 16 ALA 16 233 233 ALA ALA D . n D 1 17 ILE 17 234 234 ILE ILE D . n D 1 18 ASN 18 235 235 ASN ASN D . n D 1 19 ASN 19 236 236 ASN ASN D . n D 1 20 ASN 20 237 237 ASN ASN D . n D 1 21 LEU 21 238 238 LEU LEU D . n D 1 22 PRO 22 239 239 PRO PRO D . n D 1 23 HIS 23 240 240 HIS HIS D . n D 1 24 ALA 24 241 241 ALA ALA D . n D 1 25 TYR 25 242 242 TYR TYR D . n D 1 26 PHE 26 243 243 PHE PHE D . n D 1 27 LYS 27 244 244 LYS LYS D . n D 1 28 ASN 28 245 245 ASN ASN D . n D 1 29 LEU 29 246 246 LEU LEU D . n D 1 30 LEU 30 247 247 LEU LEU D . n D 1 31 PHE 31 248 248 PHE PHE D . n D 1 32 ARG 32 249 249 ARG ARG D . n D 1 33 LEU 33 250 250 LEU LEU D . n D 1 34 VAL 34 251 251 VAL VAL D . n D 1 35 ALA 35 252 252 ALA ALA D . n D 1 36 ASN 36 253 253 ASN ASN D . n D 1 37 MSE 37 254 254 MSE MSE D . n D 1 38 ASP 38 255 255 ASP ASP D . n D 1 39 ARG 39 256 256 ARG ARG D . n D 1 40 SER 40 257 257 SER SER D . n D 1 41 GLU 41 258 258 GLU GLU D . n D 1 42 LEU 42 259 259 LEU LEU D . n D 1 43 SER 43 260 260 SER SER D . n D 1 44 ASP 44 261 261 ASP ASP D . n D 1 45 LEU 45 262 262 LEU LEU D . n D 1 46 GLY 46 263 263 GLY GLY D . n D 1 47 THR 47 264 264 THR THR D . n D 1 48 LEU 48 265 265 LEU LEU D . n D 1 49 ILE 49 266 266 ILE ILE D . n D 1 50 LYS 50 267 267 LYS LYS D . n D 1 51 ASP 51 268 268 ASP ASP D . n D 1 52 ASN 52 269 269 ASN ASN D . n D 1 53 LEU 53 270 270 LEU LEU D . n D 1 54 LYS 54 271 271 LYS LYS D . n D 1 55 ARG 55 272 272 ARG ARG D . n D 1 56 ASP 56 273 273 ASP ASP D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 3 3 HOH HOH A . E 2 HOH 2 9 9 HOH HOH A . E 2 HOH 3 12 12 HOH HOH A . E 2 HOH 4 14 14 HOH HOH A . E 2 HOH 5 15 15 HOH HOH A . E 2 HOH 6 16 16 HOH HOH A . E 2 HOH 7 17 17 HOH HOH A . E 2 HOH 8 21 21 HOH HOH A . E 2 HOH 9 23 23 HOH HOH A . E 2 HOH 10 25 25 HOH HOH A . E 2 HOH 11 27 27 HOH HOH A . E 2 HOH 12 30 30 HOH HOH A . E 2 HOH 13 33 33 HOH HOH A . F 2 HOH 1 18 18 HOH HOH B . F 2 HOH 2 19 19 HOH HOH B . F 2 HOH 3 22 22 HOH HOH B . F 2 HOH 4 29 29 HOH HOH B . F 2 HOH 5 37 37 HOH HOH B . G 2 HOH 1 1 1 HOH HOH C . G 2 HOH 2 2 2 HOH HOH C . G 2 HOH 3 4 4 HOH HOH C . G 2 HOH 4 5 5 HOH HOH C . G 2 HOH 5 6 6 HOH HOH C . G 2 HOH 6 7 7 HOH HOH C . G 2 HOH 7 8 8 HOH HOH C . G 2 HOH 8 11 11 HOH HOH C . G 2 HOH 9 13 13 HOH HOH C . G 2 HOH 10 26 26 HOH HOH C . G 2 HOH 11 32 32 HOH HOH C . G 2 HOH 12 34 34 HOH HOH C . G 2 HOH 13 35 35 HOH HOH C . G 2 HOH 14 36 36 HOH HOH C . H 2 HOH 1 10 10 HOH HOH D . H 2 HOH 2 20 20 HOH HOH D . H 2 HOH 3 24 24 HOH HOH D . H 2 HOH 4 28 28 HOH HOH D . H 2 HOH 5 31 31 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 37 A MSE 254 ? MET SELENOMETHIONINE 2 B MSE 37 B MSE 254 ? MET SELENOMETHIONINE 3 C MSE 37 C MSE 254 ? MET SELENOMETHIONINE 4 D MSE 37 D MSE 254 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS tetrameric 4 2 software_defined_assembly PISA dimeric 2 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1 C,D,G,H 3 1 A,B,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3150 ? 2 MORE -25 ? 2 'SSA (A^2)' 7310 ? 3 'ABSA (A^2)' 2860 ? 3 MORE -24 ? 3 'SSA (A^2)' 7300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-06-19 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 10.7972 1.9706 13.6394 0.2315 0.0249 0.1682 0.0401 0.0839 -0.0400 1.5798 5.3017 3.7064 -2.6528 1.6578 -1.4927 0.2998 -0.0420 0.0395 -0.2766 -0.1512 -0.1217 0.1004 0.0563 -0.1486 'X-RAY DIFFRACTION' 2 ? refined 9.7408 0.7361 12.1976 0.0685 0.0866 0.1080 0.1179 0.0587 -0.0879 0.6088 12.1532 8.5283 -1.8157 1.4875 -2.1455 -0.1521 -0.1531 -0.0607 0.2297 0.6962 -0.2269 -0.1692 0.0891 -0.5441 'X-RAY DIFFRACTION' 3 ? refined 11.0200 -2.3219 -13.7254 0.2212 0.0446 0.1745 -0.0323 -0.0635 -0.0554 2.0696 5.0032 3.8639 3.2161 -1.4600 -2.1437 0.3210 0.0278 -0.0461 0.2370 -0.1054 -0.1133 -0.1097 0.0523 -0.2156 'X-RAY DIFFRACTION' 4 ? refined 9.4030 -1.0331 -11.7959 0.0772 0.0754 0.1331 -0.0883 -0.0903 -0.1056 0.4678 13.2058 8.8648 1.4884 -1.7439 -2.3367 -0.1569 0.2339 0.0695 -0.1281 0.8252 -0.2537 0.2360 0.0120 -0.6684 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 228 A 11 A 272 A 55 ? 'X-RAY DIFFRACTION' ? 2 2 B 228 B 11 B 272 B 55 ? 'X-RAY DIFFRACTION' ? 3 3 C 228 C 11 C 273 C 56 ? 'X-RAY DIFFRACTION' ? 4 4 D 228 D 11 D 273 D 56 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 EPICS-based 'data collection' 'beamline control' ? 2 data 'data collection' 'acquisition systems' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 SHELXD phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 255 ? ? -108.44 -169.00 2 1 ASP B 228 ? ? -47.27 -73.60 3 1 MSE B 254 ? ? -54.16 179.74 4 1 GLU C 224 ? ? -147.54 12.61 5 1 LYS C 271 ? ? -116.19 51.29 6 1 ASN D 253 ? ? -89.72 43.05 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 218 ? A GLY 1 2 1 Y 1 A ALA 219 ? A ALA 2 3 1 Y 1 A MSE 220 ? A MSE 3 4 1 Y 1 A ASP 273 ? A ASP 56 5 1 Y 1 B GLY 218 ? B GLY 1 6 1 Y 1 B ALA 219 ? B ALA 2 7 1 Y 1 B MSE 220 ? B MSE 3 8 1 Y 1 B GLY 221 ? B GLY 4 9 1 Y 1 B ASP 273 ? B ASP 56 10 1 Y 1 C GLY 218 ? C GLY 1 11 1 Y 1 C ALA 219 ? C ALA 2 12 1 Y 1 C MSE 220 ? C MSE 3 13 1 Y 1 D GLY 218 ? D GLY 1 14 1 Y 1 D ALA 219 ? D ALA 2 15 1 Y 1 D MSE 220 ? D MSE 3 16 1 Y 1 D GLY 221 ? D GLY 4 17 1 Y 1 D SER 222 ? D SER 5 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #