HEADER LIGASE 16-MAR-07 2P64 TITLE D DOMAIN OF B-TRCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX/WD REPEAT PROTEIN 1A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: D DOMAIN; COMPND 5 SYNONYM: F-BOX AND WD REPEATS PROTEIN BETA-TRCP, E3RSIKAPPAB, COMPND 6 PIKAPPABALPHA-E3 RECEPTOR SUBUNIT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTRC, BTRCP, FBW1A, FBXW1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS RIGHT HANDED SUPER-HELICAL BUNDLE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NECULAI,S.ORLICKY,D.CECCARELLI REVDAT 4 13-JUL-11 2P64 1 VERSN REVDAT 3 24-FEB-09 2P64 1 VERSN REVDAT 2 17-JUN-08 2P64 1 JRNL REVDAT 1 19-JUN-07 2P64 0 JRNL AUTH X.TANG,S.ORLICKY,Z.LIN,A.WILLEMS,D.NECULAI,D.CECCARELLI, JRNL AUTH 2 F.MERCURIO,B.H.SHILTON,F.SICHERI,M.TYERS JRNL TITL SUPRAFACIAL ORIENTATION OF THE SCFCDC4 DIMER ACCOMMODATES JRNL TITL 2 MULTIPLE GEOMETRIES FOR SUBSTRATE UBIQUITINATION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 129 1165 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17574027 JRNL DOI 10.1016/J.CELL.2007.04.042 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.644 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 906 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1215 ; 1.544 ; 1.913 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 103 ; 4.992 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;43.342 ;25.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 163 ;19.960 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 118 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 698 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 398 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 600 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 16 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.331 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.302 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.359 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 536 ; 1.208 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 830 ; 1.531 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 435 ; 2.696 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 385 ; 3.453 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 67.3197 44.0755 55.5159 REMARK 3 T TENSOR REMARK 3 T11: -0.0845 T22: 0.0716 REMARK 3 T33: 0.0389 T12: -0.0289 REMARK 3 T13: -0.0499 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 6.0270 L22: 5.6078 REMARK 3 L33: 5.9959 L12: -1.7441 REMARK 3 L13: -0.9043 L23: 1.8521 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: -0.2142 S13: 0.1268 REMARK 3 S21: 0.0150 S22: 0.2200 S23: -0.5427 REMARK 3 S31: 0.2051 S32: 0.4123 S33: -0.1330 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 127 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): 65.1517 42.8306 56.5596 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: -0.0171 REMARK 3 T33: 0.0310 T12: -0.0424 REMARK 3 T13: -0.0779 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.4588 L22: 3.3536 REMARK 3 L33: 4.1815 L12: -1.5351 REMARK 3 L13: 1.0199 L23: -0.7805 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: 0.0462 S13: -0.4158 REMARK 3 S21: -0.1071 S22: 0.0776 S23: 0.0204 REMARK 3 S31: 0.1801 S32: 0.1254 S33: -0.1666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P64 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB042013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97906 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11999 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.24600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MGCL2, 5 MM CDCL2, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.15050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.65800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.65800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.22575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.65800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.65800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.07525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.65800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.65800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.22575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.65800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.65800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.07525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.15050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 161 OE2 GLU B 146 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CYS A 161 CD CD A 100 3644 1.50 REMARK 500 OE2 GLU B 146 CD CD A 100 3644 1.71 REMARK 500 OE1 GLU B 146 CD CD A 100 3644 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 146 CB GLU B 146 CG 0.133 REMARK 500 GLU B 146 CG GLU B 146 CD 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 161 CA - CB - SG ANGL. DEV. = 13.1 DEGREES REMARK 500 GLU B 146 OE1 - CD - OE2 ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 100 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 146 OE2 REMARK 620 2 GLU B 146 OE2 162.6 REMARK 620 3 GLU B 146 OE1 126.0 68.5 REMARK 620 4 CYS A 161 SG 102.9 61.5 104.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 100 DBREF 2P64 A 128 177 UNP Q9Y297 FBW1A_HUMAN 128 177 DBREF 2P64 B 128 177 UNP Q9Y297 FBW1A_HUMAN 128 177 SEQADV 2P64 GLY A 126 UNP Q9Y297 CLONING ARTIFACT SEQADV 2P64 ALA A 127 UNP Q9Y297 CLONING ARTIFACT SEQADV 2P64 MSE A 160 UNP Q9Y297 MET 160 MODIFIED RESIDUE SEQADV 2P64 MSE A 175 UNP Q9Y297 MET 175 MODIFIED RESIDUE SEQADV 2P64 GLY B 126 UNP Q9Y297 CLONING ARTIFACT SEQADV 2P64 ALA B 127 UNP Q9Y297 CLONING ARTIFACT SEQADV 2P64 MSE B 160 UNP Q9Y297 MET 160 MODIFIED RESIDUE SEQADV 2P64 MSE B 175 UNP Q9Y297 MET 175 MODIFIED RESIDUE SEQRES 1 A 52 GLY ALA ALA SER TYR GLU LYS GLU LYS GLU LEU CYS VAL SEQRES 2 A 52 LYS TYR PHE GLU GLN TRP SER GLU SER ASP GLN VAL GLU SEQRES 3 A 52 PHE VAL GLU HIS LEU ILE SER GLN MSE CYS HIS TYR GLN SEQRES 4 A 52 HIS GLY HIS ILE ASN SER TYR LEU LYS PRO MSE LEU GLN SEQRES 1 B 52 GLY ALA ALA SER TYR GLU LYS GLU LYS GLU LEU CYS VAL SEQRES 2 B 52 LYS TYR PHE GLU GLN TRP SER GLU SER ASP GLN VAL GLU SEQRES 3 B 52 PHE VAL GLU HIS LEU ILE SER GLN MSE CYS HIS TYR GLN SEQRES 4 B 52 HIS GLY HIS ILE ASN SER TYR LEU LYS PRO MSE LEU GLN MODRES 2P64 MSE A 160 MET SELENOMETHIONINE MODRES 2P64 MSE A 175 MET SELENOMETHIONINE MODRES 2P64 MSE B 160 MET SELENOMETHIONINE MODRES 2P64 MSE B 175 MET SELENOMETHIONINE HET MSE A 160 8 HET MSE A 175 8 HET MSE B 160 8 HET MSE B 175 8 HET CD A 100 1 HETNAM MSE SELENOMETHIONINE HETNAM CD CADMIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 CD CD 2+ FORMUL 4 HOH *11(H2 O) HELIX 1 1 ALA A 128 GLU A 142 1 15 HELIX 2 2 SER A 145 GLN A 159 1 15 HELIX 3 3 CYS A 161 LYS A 173 1 13 HELIX 4 4 PRO A 174 LEU A 176 5 3 HELIX 5 5 GLY B 126 ALA B 128 5 3 HELIX 6 6 SER B 129 GLU B 142 1 14 HELIX 7 7 SER B 145 GLN B 159 1 15 HELIX 8 8 CYS B 161 LYS B 173 1 13 HELIX 9 9 PRO B 174 GLN B 177 5 4 LINK OE2 GLU A 146 CD CD A 100 1555 1555 2.18 LINK C GLN A 159 N MSE A 160 1555 1555 1.33 LINK C MSE A 160 N CYS A 161 1555 1555 1.35 LINK C PRO A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N LEU A 176 1555 1555 1.33 LINK C GLN B 159 N MSE B 160 1555 1555 1.32 LINK C MSE B 160 N CYS B 161 1555 1555 1.32 LINK C PRO B 174 N MSE B 175 1555 1555 1.33 LINK C MSE B 175 N LEU B 176 1555 1555 1.33 LINK CD CD A 100 OE2 GLU B 146 1555 4565 1.72 LINK CD CD A 100 OE1 GLU B 146 1555 4565 2.05 LINK CD CD A 100 SG CYS A 161 1555 4565 1.50 CISPEP 1 ALA A 127 ALA A 128 0 5.74 SITE 1 AC1 4 GLU A 146 CYS A 161 GLU B 146 CYS B 161 CRYST1 71.316 71.316 116.301 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014022 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008598 0.00000