HEADER HYDROLASE 19-MAR-07 2P6N TITLE HUMAN DEAD-BOX RNA HELICASE DDX41, HELICASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX41; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HELICASE DOMAIN; COMPND 5 SYNONYM: DEAD BOX PROTEIN 41, DEAD BOX PROTEIN ABSTRAKT HOMOLOG; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX41, ABS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS RNA, HELICASE, DEAD, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,D.OGG,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,B.M.HALLBERG, AUTHOR 3 M.HAMMARSTROM,I.JOHANSSON,T.KOTENYOVA,L.LEHTIO,M.MOCHE,P.NORDLUND, AUTHOR 4 T.NYMAN,C.PERSSON,J.SAGEMARK,P.STENMARK,M.SUNDSTROM,A.G.THORSELL, AUTHOR 5 S.VAN DEN BERG,J.WEIGELT,L.HOLMBERG-SCHIAVONE,STRUCTURAL GENOMICS AUTHOR 6 CONSORTIUM (SGC) REVDAT 6 30-AUG-23 2P6N 1 REMARK REVDAT 5 20-OCT-21 2P6N 1 SEQADV REVDAT 4 13-JUL-11 2P6N 1 VERSN REVDAT 3 27-OCT-10 2P6N 1 JRNL REVDAT 2 24-FEB-09 2P6N 1 VERSN REVDAT 1 03-APR-07 2P6N 0 JRNL AUTH P.SCHUTZ,T.KARLBERG,S.VAN DEN BERG,R.COLLINS,L.LEHTIO, JRNL AUTH 2 M.HOGBOM,L.HOLMBERG-SCHIAVONE,W.TEMPEL,H.W.PARK, JRNL AUTH 3 M.HAMMARSTROM,M.MOCHE,A.G.THORSELL,H.SCHULER JRNL TITL COMPARATIVE STRUCTURAL ANALYSIS OF HUMAN DEAD-BOX RNA JRNL TITL 2 HELICASES. JRNL REF PLOS ONE V. 5 12791 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20941364 JRNL DOI 10.1371/JOURNAL.PONE.0012791 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2481 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.559 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.337 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.859 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2518 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1691 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3404 ; 1.602 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4192 ; 0.909 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.343 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;42.956 ;25.943 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;18.747 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;24.418 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2726 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 430 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 562 ; 0.250 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1756 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1227 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1351 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 51 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 18 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1733 ; 0.635 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 636 ; 0.123 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2564 ; 0.942 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1009 ; 1.612 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 840 ; 2.548 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 406 A 565 5 REMARK 3 1 B 406 B 565 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 926 ; 0.23 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 B (A): 1130 ; 0.51 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 926 ; 0.32 ; 2.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1130 ; 0.44 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 406 A 431 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9110 33.9770 191.6930 REMARK 3 T TENSOR REMARK 3 T11: -0.0312 T22: 0.0619 REMARK 3 T33: -0.2277 T12: -0.0803 REMARK 3 T13: -0.0162 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 7.1667 L22: 6.5293 REMARK 3 L33: 8.3378 L12: -3.4473 REMARK 3 L13: -1.3977 L23: -0.8578 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.1145 S13: 0.4293 REMARK 3 S21: 0.7234 S22: -0.0013 S23: -0.2410 REMARK 3 S31: -0.2354 S32: 0.0780 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 432 A 508 REMARK 3 ORIGIN FOR THE GROUP (A): -24.5130 33.2650 176.1220 REMARK 3 T TENSOR REMARK 3 T11: -0.0344 T22: 0.0962 REMARK 3 T33: -0.0934 T12: -0.0576 REMARK 3 T13: 0.0201 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 4.0322 L22: 3.7860 REMARK 3 L33: 6.7715 L12: 0.8659 REMARK 3 L13: -0.1556 L23: 0.6366 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: 0.4739 S13: 0.2612 REMARK 3 S21: -0.2955 S22: 0.1424 S23: 0.0251 REMARK 3 S31: -0.1877 S32: -0.1230 S33: -0.0244 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 509 A 568 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9970 25.5280 190.7190 REMARK 3 T TENSOR REMARK 3 T11: -0.0877 T22: 0.1135 REMARK 3 T33: -0.0660 T12: -0.0555 REMARK 3 T13: 0.0328 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 7.1827 L22: 4.6970 REMARK 3 L33: 6.7789 L12: -1.3006 REMARK 3 L13: 2.3128 L23: 0.7031 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.0180 S13: -0.1703 REMARK 3 S21: -0.1530 S22: -0.3045 S23: -0.3727 REMARK 3 S31: 0.2022 S32: 0.4636 S33: 0.3460 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 406 B 431 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1990 24.5760 191.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.2121 REMARK 3 T33: -0.1241 T12: -0.0498 REMARK 3 T13: 0.0772 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 6.2403 L22: 3.5007 REMARK 3 L33: 5.6320 L12: 3.7737 REMARK 3 L13: 1.2534 L23: 0.6441 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 1.2220 S13: -0.3384 REMARK 3 S21: -0.5125 S22: 0.2112 S23: 0.0387 REMARK 3 S31: 0.3996 S32: 0.0914 S33: -0.1783 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 432 B 508 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4520 25.6870 207.2840 REMARK 3 T TENSOR REMARK 3 T11: -0.0520 T22: 0.0349 REMARK 3 T33: -0.1025 T12: 0.0349 REMARK 3 T13: 0.0645 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 4.9156 L22: 3.3541 REMARK 3 L33: 5.6513 L12: -1.3656 REMARK 3 L13: -0.4729 L23: 1.1903 REMARK 3 S TENSOR REMARK 3 S11: -0.2117 S12: -0.2211 S13: -0.0516 REMARK 3 S21: 0.1108 S22: 0.2445 S23: 0.1148 REMARK 3 S31: 0.1333 S32: -0.1278 S33: -0.0329 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 509 B 565 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6650 32.8900 193.4090 REMARK 3 T TENSOR REMARK 3 T11: -0.0815 T22: 0.1469 REMARK 3 T33: -0.0453 T12: 0.0212 REMARK 3 T13: 0.0657 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 6.8775 L22: 6.0641 REMARK 3 L33: 4.3295 L12: 1.1452 REMARK 3 L13: -1.4436 L23: 0.5550 REMARK 3 S TENSOR REMARK 3 S11: -0.1777 S12: 0.4082 S13: 0.3967 REMARK 3 S21: -0.1833 S22: 0.2227 S23: -0.3175 REMARK 3 S31: -0.0228 S32: 0.0447 S33: -0.0450 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04005 REMARK 200 MONOCHROMATOR : KHOZU, WITH A MCLENNON REMARK 200 CONTROLLER CONTAINING A LN2 REMARK 200 COOLED SI111 CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL, SI(111) OR REMARK 200 SI(311), TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13827 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 40.00 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.02900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 41.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 12.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2I4I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 200MM LITHIUM SULFATE, REMARK 280 100MM BIS-TRIS, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 203.73600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.86800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 152.80200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.93400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 254.67000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 203.73600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 101.86800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.93400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 152.80200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 254.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS A MONOMER. REMARK 300 SEE REMARK 350 FOR INFORMATION ON GENERATING THE REMARK 300 BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 SER A 386 REMARK 465 SER A 387 REMARK 465 GLY A 388 REMARK 465 VAL A 389 REMARK 465 ASP A 390 REMARK 465 LEU A 391 REMARK 465 GLY A 392 REMARK 465 THR A 393 REMARK 465 GLU A 394 REMARK 465 ASN A 395 REMARK 465 LEU A 396 REMARK 465 TYR A 397 REMARK 465 PHE A 398 REMARK 465 GLN A 399 REMARK 465 SER A 400 REMARK 465 MET A 401 REMARK 465 GLY A 402 REMARK 465 ALA A 403 REMARK 465 ALA A 404 REMARK 465 SER A 405 REMARK 465 SER A 526 REMARK 465 GLY A 527 REMARK 465 ASN A 528 REMARK 465 GLY A 569 REMARK 465 MET B 379 REMARK 465 HIS B 380 REMARK 465 HIS B 381 REMARK 465 HIS B 382 REMARK 465 HIS B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 SER B 386 REMARK 465 SER B 387 REMARK 465 GLY B 388 REMARK 465 VAL B 389 REMARK 465 ASP B 390 REMARK 465 LEU B 391 REMARK 465 GLY B 392 REMARK 465 THR B 393 REMARK 465 GLU B 394 REMARK 465 ASN B 395 REMARK 465 LEU B 396 REMARK 465 TYR B 397 REMARK 465 PHE B 398 REMARK 465 GLN B 399 REMARK 465 SER B 400 REMARK 465 MET B 401 REMARK 465 GLY B 402 REMARK 465 ALA B 403 REMARK 465 ALA B 404 REMARK 465 SER B 405 REMARK 465 GLY B 527 REMARK 465 ASN B 528 REMARK 465 LEU B 566 REMARK 465 HIS B 567 REMARK 465 CYS B 568 REMARK 465 GLY B 569 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 542 CG CD OE1 OE2 REMARK 470 SER B 543 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 458 91.94 -66.37 REMARK 500 ALA A 500 101.56 -59.90 REMARK 500 HIS A 503 115.10 -160.96 REMARK 500 ASN A 537 -164.22 -162.91 REMARK 500 LEU A 566 -63.50 -29.62 REMARK 500 ASP B 467 -170.91 -66.12 REMARK 500 ALA B 500 103.83 -53.96 REMARK 500 SER B 543 -71.56 -36.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 2P6N A 402 569 UNP Q9UJV9 DDX41_HUMAN 402 569 DBREF 2P6N B 402 569 UNP Q9UJV9 DDX41_HUMAN 402 569 SEQADV 2P6N MET A 379 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS A 380 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS A 381 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS A 382 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS A 383 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS A 384 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS A 385 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N SER A 386 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N SER A 387 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N GLY A 388 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N VAL A 389 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N ASP A 390 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N LEU A 391 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N GLY A 392 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N THR A 393 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N GLU A 394 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N ASN A 395 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N LEU A 396 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N TYR A 397 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N PHE A 398 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N GLN A 399 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N SER A 400 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N MET A 401 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N CYS A 525 UNP Q9UJV9 ARG 525 ENGINEERED MUTATION SEQADV 2P6N MET B 379 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS B 380 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS B 381 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS B 382 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS B 383 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS B 384 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N HIS B 385 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N SER B 386 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N SER B 387 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N GLY B 388 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N VAL B 389 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N ASP B 390 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N LEU B 391 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N GLY B 392 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N THR B 393 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N GLU B 394 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N ASN B 395 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N LEU B 396 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N TYR B 397 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N PHE B 398 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N GLN B 399 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N SER B 400 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N MET B 401 UNP Q9UJV9 CLONING ARTIFACT SEQADV 2P6N CYS B 525 UNP Q9UJV9 ARG 525 ENGINEERED MUTATION SEQRES 1 A 191 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 191 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY ALA ALA SEQRES 3 A 191 SER LEU ASP VAL ILE GLN GLU VAL GLU TYR VAL LYS GLU SEQRES 4 A 191 GLU ALA LYS MET VAL TYR LEU LEU GLU CYS LEU GLN LYS SEQRES 5 A 191 THR PRO PRO PRO VAL LEU ILE PHE ALA GLU LYS LYS ALA SEQRES 6 A 191 ASP VAL ASP ALA ILE HIS GLU TYR LEU LEU LEU LYS GLY SEQRES 7 A 191 VAL GLU ALA VAL ALA ILE HIS GLY GLY LYS ASP GLN GLU SEQRES 8 A 191 GLU ARG THR LYS ALA ILE GLU ALA PHE ARG GLU GLY LYS SEQRES 9 A 191 LYS ASP VAL LEU VAL ALA THR ASP VAL ALA SER LYS GLY SEQRES 10 A 191 LEU ASP PHE PRO ALA ILE GLN HIS VAL ILE ASN TYR ASP SEQRES 11 A 191 MET PRO GLU GLU ILE GLU ASN TYR VAL HIS ARG ILE GLY SEQRES 12 A 191 ARG THR GLY CYS SER GLY ASN THR GLY ILE ALA THR THR SEQRES 13 A 191 PHE ILE ASN LYS ALA CYS ASP GLU SER VAL LEU MET ASP SEQRES 14 A 191 LEU LYS ALA LEU LEU LEU GLU ALA LYS GLN LYS VAL PRO SEQRES 15 A 191 PRO VAL LEU GLN VAL LEU HIS CYS GLY SEQRES 1 B 191 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 191 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY ALA ALA SEQRES 3 B 191 SER LEU ASP VAL ILE GLN GLU VAL GLU TYR VAL LYS GLU SEQRES 4 B 191 GLU ALA LYS MET VAL TYR LEU LEU GLU CYS LEU GLN LYS SEQRES 5 B 191 THR PRO PRO PRO VAL LEU ILE PHE ALA GLU LYS LYS ALA SEQRES 6 B 191 ASP VAL ASP ALA ILE HIS GLU TYR LEU LEU LEU LYS GLY SEQRES 7 B 191 VAL GLU ALA VAL ALA ILE HIS GLY GLY LYS ASP GLN GLU SEQRES 8 B 191 GLU ARG THR LYS ALA ILE GLU ALA PHE ARG GLU GLY LYS SEQRES 9 B 191 LYS ASP VAL LEU VAL ALA THR ASP VAL ALA SER LYS GLY SEQRES 10 B 191 LEU ASP PHE PRO ALA ILE GLN HIS VAL ILE ASN TYR ASP SEQRES 11 B 191 MET PRO GLU GLU ILE GLU ASN TYR VAL HIS ARG ILE GLY SEQRES 12 B 191 ARG THR GLY CYS SER GLY ASN THR GLY ILE ALA THR THR SEQRES 13 B 191 PHE ILE ASN LYS ALA CYS ASP GLU SER VAL LEU MET ASP SEQRES 14 B 191 LEU LYS ALA LEU LEU LEU GLU ALA LYS GLN LYS VAL PRO SEQRES 15 B 191 PRO VAL LEU GLN VAL LEU HIS CYS GLY HELIX 1 1 LYS A 416 GLU A 418 5 3 HELIX 2 2 ALA A 419 GLN A 429 1 11 HELIX 3 3 LYS A 441 GLY A 456 1 16 HELIX 4 4 ASP A 467 GLY A 481 1 15 HELIX 5 5 THR A 489 LYS A 494 1 6 HELIX 6 6 GLU A 512 GLY A 521 1 10 HELIX 7 7 ASP A 541 ALA A 555 1 15 HELIX 8 8 PRO A 560 VAL A 565 1 6 HELIX 9 9 LYS B 416 GLU B 418 5 3 HELIX 10 10 ALA B 419 LEU B 428 1 10 HELIX 11 11 GLN B 429 THR B 431 5 3 HELIX 12 12 LYS B 441 LYS B 455 1 15 HELIX 13 13 ASP B 467 GLU B 480 1 14 HELIX 14 14 THR B 489 LYS B 494 1 6 HELIX 15 15 GLU B 512 GLY B 521 1 10 HELIX 16 16 ASP B 541 ALA B 555 1 15 HELIX 17 17 PRO B 560 GLN B 564 5 5 SHEET 1 A 6 ILE A 409 TYR A 414 0 SHEET 2 A 6 ILE A 531 ILE A 536 1 O ALA A 532 N GLU A 411 SHEET 3 A 6 HIS A 503 ASN A 506 1 N ASN A 506 O THR A 533 SHEET 4 A 6 VAL A 435 PHE A 438 1 N LEU A 436 O ILE A 505 SHEET 5 A 6 VAL A 485 ALA A 488 1 O ALA A 488 N ILE A 437 SHEET 6 A 6 ALA A 459 ILE A 462 1 N VAL A 460 O VAL A 487 SHEET 1 B 6 VAL B 408 TYR B 414 0 SHEET 2 B 6 GLY B 530 ILE B 536 1 O ILE B 536 N GLU B 413 SHEET 3 B 6 HIS B 503 ASN B 506 1 N ASN B 506 O THR B 533 SHEET 4 B 6 VAL B 435 PHE B 438 1 N LEU B 436 O ILE B 505 SHEET 5 B 6 VAL B 485 ALA B 488 1 O LEU B 486 N ILE B 437 SHEET 6 B 6 ALA B 459 ILE B 462 1 N ILE B 462 O VAL B 487 CISPEP 1 PRO A 433 PRO A 434 0 1.35 CISPEP 2 PRO B 433 PRO B 434 0 1.27 CRYST1 68.013 68.013 305.604 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014703 0.008489 0.000000 0.00000 SCALE2 0.000000 0.016978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003272 0.00000