HEADER TRANSFERASE 19-MAR-07 2P6P TITLE X-RAY CRYSTAL STRUCTURE OF C-C BOND-FORMING DTDP-D-OLIVOSE-TRANSFERASE TITLE 2 URDGT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES FRADIAE; SOURCE 3 ORGANISM_TAXID: 1906; SOURCE 4 STRAIN: STREPTOMYCES FRADIAE TUE2717; SOURCE 5 GENE: URDGT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: E. COLI BL21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSET KEYWDS C-GLYCOSYLTRANSFERASE, DTDP-D-OLIVOSE-TRANSFERASE, POLYKETIDE KEYWDS 2 AGLYCON, GT-B FAMILY, X-RAY-DIFFRACTION, URDAMYCINA-BIOSYNTHESIS, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MITTLER,A.BECHTHOLD,G.E.SCHULZ REVDAT 5 21-FEB-24 2P6P 1 REMARK REVDAT 4 13-JUL-11 2P6P 1 VERSN REVDAT 3 24-FEB-09 2P6P 1 VERSN REVDAT 2 30-OCT-07 2P6P 1 JRNL REVDAT 1 07-AUG-07 2P6P 0 JRNL AUTH M.MITTLER,A.BECHTHOLD,G.E.SCHULZ JRNL TITL STRUCTURE AND ACTION OF THE C-C BOND-FORMING JRNL TITL 2 GLYCOSYLTRANSFERASE URDGT2 INVOLVED IN THE BIOSYNTHESIS OF JRNL TITL 3 THE ANTIBIOTIC URDAMYCIN. JRNL REF J.MOL.BIOL. V. 372 67 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17640665 JRNL DOI 10.1016/J.JMB.2007.06.005 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 54481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.507 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5931 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8105 ; 1.584 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 761 ; 6.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;33.651 ;22.114 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 888 ;17.664 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;19.897 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 930 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4556 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2891 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4012 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 403 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 109 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3919 ; 0.904 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6143 ; 1.383 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2252 ; 2.270 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1959 ; 3.531 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0230 34.3210 58.3400 REMARK 3 T TENSOR REMARK 3 T11: -0.1320 T22: -0.1636 REMARK 3 T33: -0.1680 T12: 0.0217 REMARK 3 T13: -0.0033 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 1.4796 L22: 1.2733 REMARK 3 L33: 1.3319 L12: 0.0724 REMARK 3 L13: -0.0765 L23: -0.5067 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: 0.0990 S13: 0.0026 REMARK 3 S21: -0.0633 S22: -0.0821 S23: -0.1026 REMARK 3 S31: -0.0488 S32: 0.0408 S33: 0.0257 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 382 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6690 49.4080 63.4770 REMARK 3 T TENSOR REMARK 3 T11: -0.0101 T22: -0.0671 REMARK 3 T33: -0.0721 T12: -0.0204 REMARK 3 T13: 0.0309 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.4301 L22: 4.5905 REMARK 3 L33: 1.6318 L12: -0.5704 REMARK 3 L13: 0.0351 L23: -0.9533 REMARK 3 S TENSOR REMARK 3 S11: 0.0883 S12: -0.0940 S13: 0.4151 REMARK 3 S21: 0.5551 S22: -0.0870 S23: -0.0437 REMARK 3 S31: -0.4818 S32: 0.0188 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8490 34.8020 95.7570 REMARK 3 T TENSOR REMARK 3 T11: -0.1042 T22: -0.0830 REMARK 3 T33: -0.1002 T12: -0.0294 REMARK 3 T13: -0.0057 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.2560 L22: 1.8973 REMARK 3 L33: 2.9214 L12: -0.7628 REMARK 3 L13: -1.0880 L23: 0.8060 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.2836 S13: 0.0074 REMARK 3 S21: 0.2248 S22: 0.0351 S23: -0.0848 REMARK 3 S31: -0.1211 S32: 0.1238 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 197 B 383 REMARK 3 ORIGIN FOR THE GROUP (A): 46.6200 24.8820 91.9190 REMARK 3 T TENSOR REMARK 3 T11: -0.0633 T22: -0.0705 REMARK 3 T33: -0.1165 T12: -0.0033 REMARK 3 T13: 0.0079 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 3.2072 L22: 0.5721 REMARK 3 L33: 1.4502 L12: -0.4180 REMARK 3 L13: 0.9784 L23: -0.2975 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: -0.3141 S13: 0.2712 REMARK 3 S21: 0.1445 S22: -0.0041 S23: -0.0485 REMARK 3 S31: -0.1120 S32: 0.1197 S33: 0.0525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-06; 13-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SLS; SLS REMARK 200 BEAMLINE : X06SA; X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1036; 1.0377, 1.0398, 0.8551 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE-CRYSTAL; SI 111 REMARK 200 DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57345 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 68.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 6.40000 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 68.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 6.40000 REMARK 200 FOR SHELL : 15.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES,18% PEG 1500, PH 7.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.93600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.97900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.97900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.93600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.45200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 SER B 219 REMARK 465 ARG B 220 REMARK 465 VAL B 221 REMARK 465 ALA B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 SER B 225 REMARK 465 TYR B 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 291 O HOH B 1157 1.79 REMARK 500 O HOH B 1145 O HOH B 1146 1.81 REMARK 500 O ASP B 239 O HOH B 1155 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 155 OG1 THR B 349 3656 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 201 CG GLU A 201 CD 0.099 REMARK 500 GLU A 201 CD GLU A 201 OE1 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 153 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 187 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 207 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 207 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 7 -136.83 -89.91 REMARK 500 ALA A 8 -131.41 -151.82 REMARK 500 ASP A 208 -165.48 -124.15 REMARK 500 GLN A 211 95.23 36.22 REMARK 500 ASN A 229 139.03 161.26 REMARK 500 PHE A 230 -23.03 140.13 REMARK 500 ASP A 244 34.58 29.60 REMARK 500 ASP A 332 56.33 -95.97 REMARK 500 ALA B 7 -133.38 -92.66 REMARK 500 ALA B 8 -135.90 -163.03 REMARK 500 ARG B 107 65.38 60.76 REMARK 500 ASP B 137 -166.75 -175.77 REMARK 500 PRO B 180 151.60 -46.76 REMARK 500 ALA B 183 138.40 -39.36 REMARK 500 ASP B 208 -161.66 -117.77 REMARK 500 SER B 217 98.19 -160.23 REMARK 500 ALA B 287 -64.34 82.26 REMARK 500 ILE B 305 72.80 -119.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 210 GLN A 211 78.56 REMARK 500 ASN A 229 PHE A 230 -36.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATES THAT THE SEQUENCE DATABASE REFERENCE REMARK 999 THAT WAS USED FOR THIS ENTRY (UNP Q9RPA7) DOES NOT REMARK 999 MATCH SEQUENCE. THE DB REF WAS REMOVED. DBREF 2P6P A 15 378 UNP Q9RPA7 Q9RPA7_STRFR 2 365 DBREF 2P6P B 15 378 UNP Q9RPA7 Q9RPA7_STRFR 2 365 SEQRES 1 A 384 MET ARG ILE LEU PHE VAL ALA ALA GLY SER PRO ALA THR SEQRES 2 A 384 VAL PHE ALA LEU ALA PRO LEU ALA THR ALA ALA ARG ASN SEQRES 3 A 384 ALA GLY HIS GLN VAL VAL MET ALA ALA ASN GLN ASP MET SEQRES 4 A 384 GLY PRO VAL VAL THR GLY VAL GLY LEU PRO ALA VAL ALA SEQRES 5 A 384 THR THR ASP LEU PRO ILE ARG HIS PHE ILE THR THR ASP SEQRES 6 A 384 ARG GLU GLY ARG PRO GLU ALA ILE PRO SER ASP PRO VAL SEQRES 7 A 384 ALA GLN ALA ARG PHE THR GLY ARG TRP PHE ALA ARG MET SEQRES 8 A 384 ALA ALA SER SER LEU PRO ARG MET LEU ASP PHE SER ARG SEQRES 9 A 384 ALA TRP ARG PRO ASP LEU ILE VAL GLY GLY THR MET SER SEQRES 10 A 384 TYR VAL ALA PRO LEU LEU ALA LEU HIS LEU GLY VAL PRO SEQRES 11 A 384 HIS ALA ARG GLN THR TRP ASP ALA VAL ASP ALA ASP GLY SEQRES 12 A 384 ILE HIS PRO GLY ALA ASP ALA GLU LEU ARG PRO GLU LEU SEQRES 13 A 384 SER GLU LEU GLY LEU GLU ARG LEU PRO ALA PRO ASP LEU SEQRES 14 A 384 PHE ILE ASP ILE CYS PRO PRO SER LEU ARG PRO ALA ASN SEQRES 15 A 384 ALA ALA PRO ALA ARG MET MET ARG HIS VAL ALA THR SER SEQRES 16 A 384 ARG GLN CYS PRO LEU GLU PRO TRP MET TYR THR ARG ASP SEQRES 17 A 384 THR ARG GLN ARG VAL LEU VAL THR SER GLY SER ARG VAL SEQRES 18 A 384 ALA LYS GLU SER TYR ASP ARG ASN PHE ASP PHE LEU ARG SEQRES 19 A 384 GLY LEU ALA LYS ASP LEU VAL ARG TRP ASP VAL GLU LEU SEQRES 20 A 384 ILE VAL ALA ALA PRO ASP THR VAL ALA GLU ALA LEU ARG SEQRES 21 A 384 ALA GLU VAL PRO GLN ALA ARG VAL GLY TRP THR PRO LEU SEQRES 22 A 384 ASP VAL VAL ALA PRO THR CYS ASP LEU LEU VAL HIS HIS SEQRES 23 A 384 ALA GLY GLY VAL SER THR LEU THR GLY LEU SER ALA GLY SEQRES 24 A 384 VAL PRO GLN LEU LEU ILE PRO LYS GLY SER VAL LEU GLU SEQRES 25 A 384 ALA PRO ALA ARG ARG VAL ALA ASP TYR GLY ALA ALA ILE SEQRES 26 A 384 ALA LEU LEU PRO GLY GLU ASP SER THR GLU ALA ILE ALA SEQRES 27 A 384 ASP SER CYS GLN GLU LEU GLN ALA LYS ASP THR TYR ALA SEQRES 28 A 384 ARG ARG ALA GLN ASP LEU SER ARG GLU ILE SER GLY MET SEQRES 29 A 384 PRO LEU PRO ALA THR VAL VAL THR ALA LEU GLU GLN LEU SEQRES 30 A 384 ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 384 MET ARG ILE LEU PHE VAL ALA ALA GLY SER PRO ALA THR SEQRES 2 B 384 VAL PHE ALA LEU ALA PRO LEU ALA THR ALA ALA ARG ASN SEQRES 3 B 384 ALA GLY HIS GLN VAL VAL MET ALA ALA ASN GLN ASP MET SEQRES 4 B 384 GLY PRO VAL VAL THR GLY VAL GLY LEU PRO ALA VAL ALA SEQRES 5 B 384 THR THR ASP LEU PRO ILE ARG HIS PHE ILE THR THR ASP SEQRES 6 B 384 ARG GLU GLY ARG PRO GLU ALA ILE PRO SER ASP PRO VAL SEQRES 7 B 384 ALA GLN ALA ARG PHE THR GLY ARG TRP PHE ALA ARG MET SEQRES 8 B 384 ALA ALA SER SER LEU PRO ARG MET LEU ASP PHE SER ARG SEQRES 9 B 384 ALA TRP ARG PRO ASP LEU ILE VAL GLY GLY THR MET SER SEQRES 10 B 384 TYR VAL ALA PRO LEU LEU ALA LEU HIS LEU GLY VAL PRO SEQRES 11 B 384 HIS ALA ARG GLN THR TRP ASP ALA VAL ASP ALA ASP GLY SEQRES 12 B 384 ILE HIS PRO GLY ALA ASP ALA GLU LEU ARG PRO GLU LEU SEQRES 13 B 384 SER GLU LEU GLY LEU GLU ARG LEU PRO ALA PRO ASP LEU SEQRES 14 B 384 PHE ILE ASP ILE CYS PRO PRO SER LEU ARG PRO ALA ASN SEQRES 15 B 384 ALA ALA PRO ALA ARG MET MET ARG HIS VAL ALA THR SER SEQRES 16 B 384 ARG GLN CYS PRO LEU GLU PRO TRP MET TYR THR ARG ASP SEQRES 17 B 384 THR ARG GLN ARG VAL LEU VAL THR SER GLY SER ARG VAL SEQRES 18 B 384 ALA LYS GLU SER TYR ASP ARG ASN PHE ASP PHE LEU ARG SEQRES 19 B 384 GLY LEU ALA LYS ASP LEU VAL ARG TRP ASP VAL GLU LEU SEQRES 20 B 384 ILE VAL ALA ALA PRO ASP THR VAL ALA GLU ALA LEU ARG SEQRES 21 B 384 ALA GLU VAL PRO GLN ALA ARG VAL GLY TRP THR PRO LEU SEQRES 22 B 384 ASP VAL VAL ALA PRO THR CYS ASP LEU LEU VAL HIS HIS SEQRES 23 B 384 ALA GLY GLY VAL SER THR LEU THR GLY LEU SER ALA GLY SEQRES 24 B 384 VAL PRO GLN LEU LEU ILE PRO LYS GLY SER VAL LEU GLU SEQRES 25 B 384 ALA PRO ALA ARG ARG VAL ALA ASP TYR GLY ALA ALA ILE SEQRES 26 B 384 ALA LEU LEU PRO GLY GLU ASP SER THR GLU ALA ILE ALA SEQRES 27 B 384 ASP SER CYS GLN GLU LEU GLN ALA LYS ASP THR TYR ALA SEQRES 28 B 384 ARG ARG ALA GLN ASP LEU SER ARG GLU ILE SER GLY MET SEQRES 29 B 384 PRO LEU PRO ALA THR VAL VAL THR ALA LEU GLU GLN LEU SEQRES 30 B 384 ALA HIS HIS HIS HIS HIS HIS HET GOL A1002 6 HET GOL A1003 6 HET GOL A1005 6 HET GOL A1006 6 HET GOL A1007 6 HET GOL B1001 6 HET GOL B1004 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 7(C3 H8 O3) FORMUL 10 HOH *413(H2 O) HELIX 1 1 SER A 10 ALA A 27 1 18 HELIX 2 2 ASN A 36 ASP A 38 5 3 HELIX 3 3 MET A 39 VAL A 46 1 8 HELIX 4 4 PRO A 57 THR A 64 1 8 HELIX 5 5 ASP A 76 ARG A 107 1 32 HELIX 6 6 TYR A 118 GLY A 128 1 11 HELIX 7 7 ILE A 144 LEU A 152 1 9 HELIX 8 8 LEU A 152 LEU A 159 1 8 HELIX 9 9 PRO A 175 ARG A 179 5 5 HELIX 10 10 GLU A 201 THR A 206 1 6 HELIX 11 11 PHE A 232 ARG A 242 1 11 HELIX 12 12 PRO A 252 VAL A 263 1 12 HELIX 13 13 PRO A 272 ALA A 277 1 6 HELIX 14 14 PRO A 278 CYS A 280 5 3 HELIX 15 15 VAL A 290 ALA A 298 1 9 HELIX 16 16 GLY A 308 GLY A 322 1 15 HELIX 17 17 SER A 333 LYS A 347 1 15 HELIX 18 18 LYS A 347 GLY A 363 1 17 HELIX 19 19 LEU A 366 HIS A 382 1 17 HELIX 20 20 SER B 10 ALA B 27 1 18 HELIX 21 21 ASN B 36 ASP B 38 5 3 HELIX 22 22 MET B 39 GLY B 45 1 7 HELIX 23 23 PRO B 57 ILE B 62 5 6 HELIX 24 24 ASP B 76 ARG B 107 1 32 HELIX 25 25 TYR B 118 GLY B 128 1 11 HELIX 26 26 ILE B 144 LEU B 152 1 9 HELIX 27 27 LEU B 152 LEU B 159 1 8 HELIX 28 28 PRO B 175 ARG B 179 5 5 HELIX 29 29 GLU B 201 THR B 206 5 6 HELIX 30 30 ASP B 227 TRP B 243 1 17 HELIX 31 31 PRO B 252 VAL B 263 1 12 HELIX 32 32 PRO B 272 ALA B 277 1 6 HELIX 33 33 PRO B 278 CYS B 280 5 3 HELIX 34 34 SER B 291 GLY B 299 1 9 HELIX 35 35 GLY B 308 GLY B 322 1 15 HELIX 36 36 SER B 333 LYS B 347 1 15 HELIX 37 37 LYS B 347 GLY B 363 1 17 HELIX 38 38 LEU B 366 HIS B 383 1 18 SHEET 1 A 7 ALA A 50 ALA A 52 0 SHEET 2 A 7 GLN A 30 ALA A 35 1 N ALA A 35 O VAL A 51 SHEET 3 A 7 ARG A 2 VAL A 6 1 N ILE A 3 O GLN A 30 SHEET 4 A 7 LEU A 110 GLY A 114 1 O VAL A 112 N LEU A 4 SHEET 5 A 7 HIS A 131 GLN A 134 1 O ALA A 132 N ILE A 111 SHEET 6 A 7 LEU A 169 ASP A 172 1 O ILE A 171 N ARG A 133 SHEET 7 A 7 ARG A 187 MET A 188 1 O ARG A 187 N PHE A 170 SHEET 1 B 6 ARG A 267 GLY A 269 0 SHEET 2 B 6 GLU A 246 ALA A 250 1 N VAL A 249 O ARG A 267 SHEET 3 B 6 ARG A 212 THR A 216 1 N VAL A 213 O ILE A 248 SHEET 4 B 6 LEU A 282 HIS A 285 1 O VAL A 284 N LEU A 214 SHEET 5 B 6 GLN A 302 LEU A 304 1 O LEU A 303 N LEU A 283 SHEET 6 B 6 ALA A 324 ALA A 326 1 O ILE A 325 N LEU A 304 SHEET 1 C 7 ALA B 50 ALA B 52 0 SHEET 2 C 7 GLN B 30 ALA B 35 1 N MET B 33 O VAL B 51 SHEET 3 C 7 ARG B 2 VAL B 6 1 N PHE B 5 O ALA B 34 SHEET 4 C 7 LEU B 110 GLY B 114 1 O VAL B 112 N LEU B 4 SHEET 5 C 7 HIS B 131 GLN B 134 1 O ALA B 132 N GLY B 113 SHEET 6 C 7 LEU B 169 ASP B 172 1 O ILE B 171 N ARG B 133 SHEET 7 C 7 ARG B 187 MET B 188 1 O ARG B 187 N PHE B 170 SHEET 1 D 6 ARG B 267 VAL B 268 0 SHEET 2 D 6 GLU B 246 ALA B 250 1 N LEU B 247 O ARG B 267 SHEET 3 D 6 ARG B 212 SER B 217 1 N VAL B 215 O ALA B 250 SHEET 4 D 6 LEU B 282 ALA B 287 1 O VAL B 284 N LEU B 214 SHEET 5 D 6 GLN B 302 PRO B 306 1 O ILE B 305 N HIS B 285 SHEET 6 D 6 ALA B 324 ALA B 326 1 O ILE B 325 N LEU B 304 CISPEP 1 SER B 217 GLY B 218 0 -8.18 CRYST1 65.872 78.904 133.958 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015181 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007465 0.00000