HEADER TRANSFERASE 19-MAR-07 2P72 TITLE CRYSTAL STRUCTURE OF A GLYCOSYLTRANSFERASE INVOLVED IN THE TITLE 2 GLYCOSYLATION OF THE MAJOR CAPSID OF PBCV-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSYLTRANSFERASE (MANNOSYLTRANSFERASE) INVOLVED COMPND 3 IN GLYCOSYLATING THE PBCV-1 MAJOR CAPSID PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: N-TERMINAL FRAGMENT; COMPND 6 SYNONYM: VP54; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAMECIUM BURSARIA CHLORELLA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 10506; SOURCE 4 GENE: A64R; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB-1 KEYWDS GLYCOSYLTRANSFERASE, PBCV-1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,Y.XIANG,J.L.VAN ETTEN,M.G.ROSSMANN REVDAT 6 21-FEB-24 2P72 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2P72 1 REMARK REVDAT 4 13-JUL-11 2P72 1 VERSN REVDAT 3 24-FEB-09 2P72 1 VERSN REVDAT 2 22-JUL-08 2P72 1 JRNL REVDAT 1 21-AUG-07 2P72 0 JRNL AUTH Y.ZHANG,Y.XIANG,J.L.VAN ETTEN,M.G.ROSSMANN JRNL TITL STRUCTURE AND FUNCTION OF A CHLORELLA VIRUS-ENCODED JRNL TITL 2 GLYCOSYLTRANSFERASE. JRNL REF STRUCTURE V. 15 1031 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850743 JRNL DOI 10.1016/J.STR.2007.07.006 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 30485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1988 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3537 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4824 ; 1.274 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 5.907 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;30.795 ;23.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 551 ;13.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.848 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 501 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2731 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1621 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2361 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 194 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2102 ; 0.718 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3311 ; 1.069 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1712 ; 1.795 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1513 ; 2.479 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0810 -0.1690 22.3720 REMARK 3 T TENSOR REMARK 3 T11: 0.2036 T22: -0.2149 REMARK 3 T33: -0.1647 T12: -0.0354 REMARK 3 T13: 0.0083 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.4953 L22: 3.1208 REMARK 3 L33: 1.4519 L12: 0.7558 REMARK 3 L13: -0.1707 L23: -1.4000 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: 0.1055 S13: 0.0191 REMARK 3 S21: -0.4828 S22: 0.2393 S23: 0.2379 REMARK 3 S31: 0.2728 S32: -0.1192 S33: -0.1654 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 208 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4140 25.4590 -0.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: -0.2943 REMARK 3 T33: -0.1885 T12: 0.0962 REMARK 3 T13: 0.0022 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.8567 L22: 2.6448 REMARK 3 L33: 2.6783 L12: -0.1096 REMARK 3 L13: 0.2473 L23: 0.9357 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.0285 S13: 0.0968 REMARK 3 S21: 0.6800 S22: 0.1918 S23: -0.0895 REMARK 3 S31: 0.5598 S32: 0.2288 S33: -0.2018 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 215 B 215 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6620 31.7570 -7.4830 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: -0.1305 REMARK 3 T33: -0.2457 T12: 0.0862 REMARK 3 T13: 0.0252 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 58.1640 L22: 12.6038 REMARK 3 L33: 9.8483 L12: -19.4788 REMARK 3 L13: -17.2756 L23: 8.1949 REMARK 3 S TENSOR REMARK 3 S11: -0.1542 S12: -0.8457 S13: -0.8400 REMARK 3 S21: 0.2840 S22: -0.2184 S23: 0.0533 REMARK 3 S31: -0.5550 S32: 0.0349 S33: 0.3726 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5010 -8.0690 20.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.5711 T22: -0.1662 REMARK 3 T33: -0.3404 T12: 0.1028 REMARK 3 T13: 0.1946 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 6.5382 L22: 1.1783 REMARK 3 L33: 12.2582 L12: 2.7455 REMARK 3 L13: -5.1051 L23: -1.6848 REMARK 3 S TENSOR REMARK 3 S11: -0.1654 S12: -0.1022 S13: -0.9775 REMARK 3 S21: 0.0292 S22: -0.7190 S23: 3.3809 REMARK 3 S31: 1.7483 S32: 0.7592 S33: 0.8844 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 214 B 214 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5800 32.6500 -3.0650 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: -0.1290 REMARK 3 T33: -0.0509 T12: 0.0453 REMARK 3 T13: 0.1350 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.4853 L22: 4.4232 REMARK 3 L33: 0.9961 L12: -1.1774 REMARK 3 L13: -0.3902 L23: 1.3010 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.2637 S13: -0.0444 REMARK 3 S21: -0.8807 S22: 0.1024 S23: -1.3251 REMARK 3 S31: -0.2327 S32: -0.3489 S33: -0.1284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32704 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.22400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.88800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.22400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.88800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 PRO A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 16 REMARK 465 THR A 197 REMARK 465 GLU A 207 REMARK 465 MET A 208 REMARK 465 VAL A 209 REMARK 465 ALA A 210 REMARK 465 THR A 211 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 GLY B 196 REMARK 465 VAL B 209 REMARK 465 ALA B 210 REMARK 465 THR B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 201 CB CG CD OE1 OE2 REMARK 470 ASP A 203 CG OD1 OD2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 226 O HOH A 243 2.01 REMARK 500 O HOH A 243 O HOH A 283 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 149 31.98 -92.98 REMARK 500 TYR A 150 -122.87 68.14 REMARK 500 MET A 194 51.61 -90.23 REMARK 500 PRO B 149 36.02 -91.36 REMARK 500 TYR B 150 -126.56 67.55 REMARK 500 MET B 194 41.97 -94.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 214 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD2 REMARK 620 2 ASP A 80 OD2 108.7 REMARK 620 3 HIS A 193 NE2 96.3 101.1 REMARK 620 4 HOH A 283 O 84.5 81.3 177.0 REMARK 620 5 HOH A 284 O 93.7 155.0 86.8 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 214 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 78 OD2 REMARK 620 2 ASP B 80 OD2 106.7 REMARK 620 3 HIS B 193 NE2 101.2 88.5 REMARK 620 4 UPG B 215 O1A 85.8 95.1 170.8 REMARK 620 5 HOH B 225 O 80.8 164.6 76.6 98.9 REMARK 620 6 HOH B 283 O 144.0 107.4 90.9 80.0 69.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG B 215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P6W RELATED DB: PDB REMARK 900 RELATED ID: 2P73 RELATED DB: PDB DBREF 2P72 A 1 211 UNP Q89399 Q89399_PBCV1 1 211 DBREF 2P72 B 1 211 UNP Q89399 Q89399_PBCV1 1 211 SEQADV 2P72 ALA A -1 UNP Q89399 CLONING ARTIFACT SEQADV 2P72 SER A 0 UNP Q89399 CLONING ARTIFACT SEQADV 2P72 ALA B -1 UNP Q89399 CLONING ARTIFACT SEQADV 2P72 SER B 0 UNP Q89399 CLONING ARTIFACT SEQRES 1 A 213 ALA SER MET THR THR PRO CYS ILE THR ILE LEU SER GLY SEQRES 2 A 213 HIS PHE PRO LYS GLU THR ILE TYR ALA ARG LYS THR LYS SEQRES 3 A 213 GLU LEU VAL GLU GLU TYR CYS SER ILE HIS GLY TYR ASN SEQRES 4 A 213 PHE TYR TYR GLU GLU SER GLU PRO LEU GLU THR GLU GLU SEQRES 5 A 213 HIS ALA LEU HIS PHE ARG ARG SER TRP ILE ILE GLN GLN SEQRES 6 A 213 ALA ALA GLU LYS PHE PRO SER THR GLU TRP PHE LEU TRP SEQRES 7 A 213 LEU ASP SER ASP VAL TYR VAL ASN PRO LYS ASN LYS ASN SEQRES 8 A 213 LYS PRO ILE THR SER PHE ILE ASP LEU SER ASP PRO ASN SEQRES 9 A 213 ILE LEU TYR HIS THR PHE HIS GLU ALA PRO TRP GLY SER SEQRES 10 A 213 TYR PRO ILE ASN THR GLY VAL LYS PHE VAL HIS LYS ASP SEQRES 11 A 213 ALA LEU GLU ILE GLU LYS ILE VAL TRP SER LEU ARG ASN SEQRES 12 A 213 GLU ALA PRO TRP ASN THR PHE PRO TYR GLU GLN LYS THR SEQRES 13 A 213 VAL TYR GLU TYR VAL PHE PRO ARG ILE PRO GLY ARG TYR SEQRES 14 A 213 ILE VAL HIS ASP PRO TYR THR LEU ASN CYS ILE VAL LYS SEQRES 15 A 213 ALA TYR PRO GLU HIS VAL LYS ASP ALA LEU PHE VAL HIS SEQRES 16 A 213 MET CYS GLY THR SER ARG ALA GLU ARG ASP GLU HIS MET SEQRES 17 A 213 GLU MET VAL ALA THR SEQRES 1 B 213 ALA SER MET THR THR PRO CYS ILE THR ILE LEU SER GLY SEQRES 2 B 213 HIS PHE PRO LYS GLU THR ILE TYR ALA ARG LYS THR LYS SEQRES 3 B 213 GLU LEU VAL GLU GLU TYR CYS SER ILE HIS GLY TYR ASN SEQRES 4 B 213 PHE TYR TYR GLU GLU SER GLU PRO LEU GLU THR GLU GLU SEQRES 5 B 213 HIS ALA LEU HIS PHE ARG ARG SER TRP ILE ILE GLN GLN SEQRES 6 B 213 ALA ALA GLU LYS PHE PRO SER THR GLU TRP PHE LEU TRP SEQRES 7 B 213 LEU ASP SER ASP VAL TYR VAL ASN PRO LYS ASN LYS ASN SEQRES 8 B 213 LYS PRO ILE THR SER PHE ILE ASP LEU SER ASP PRO ASN SEQRES 9 B 213 ILE LEU TYR HIS THR PHE HIS GLU ALA PRO TRP GLY SER SEQRES 10 B 213 TYR PRO ILE ASN THR GLY VAL LYS PHE VAL HIS LYS ASP SEQRES 11 B 213 ALA LEU GLU ILE GLU LYS ILE VAL TRP SER LEU ARG ASN SEQRES 12 B 213 GLU ALA PRO TRP ASN THR PHE PRO TYR GLU GLN LYS THR SEQRES 13 B 213 VAL TYR GLU TYR VAL PHE PRO ARG ILE PRO GLY ARG TYR SEQRES 14 B 213 ILE VAL HIS ASP PRO TYR THR LEU ASN CYS ILE VAL LYS SEQRES 15 B 213 ALA TYR PRO GLU HIS VAL LYS ASP ALA LEU PHE VAL HIS SEQRES 16 B 213 MET CYS GLY THR SER ARG ALA GLU ARG ASP GLU HIS MET SEQRES 17 B 213 GLU MET VAL ALA THR HET MN A 214 1 HET MN B 214 1 HET UPG B 215 36 HETNAM MN MANGANESE (II) ION HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 MN 2(MN 2+) FORMUL 5 UPG C15 H24 N2 O17 P2 FORMUL 6 HOH *138(H2 O) HELIX 1 1 THR A 17 GLY A 35 1 19 HELIX 2 2 GLU A 49 PHE A 68 1 20 HELIX 3 3 PRO A 85 LYS A 88 5 4 HELIX 4 4 PRO A 91 PHE A 95 5 5 HELIX 5 5 ALA A 129 LEU A 139 1 11 HELIX 6 6 TYR A 150 TYR A 158 1 9 HELIX 7 7 TYR A 158 ILE A 163 1 6 HELIX 8 8 HIS A 185 ALA A 189 5 5 HELIX 9 9 SER A 198 MET A 206 1 9 HELIX 10 10 THR B 17 GLY B 35 1 19 HELIX 11 11 GLU B 49 ARG B 56 1 8 HELIX 12 12 ARG B 56 PHE B 68 1 13 HELIX 13 13 PRO B 85 LYS B 88 5 4 HELIX 14 14 PRO B 91 PHE B 95 5 5 HELIX 15 15 ALA B 129 LEU B 139 1 11 HELIX 16 16 TYR B 150 TYR B 158 1 9 HELIX 17 17 TYR B 158 ILE B 163 1 6 HELIX 18 18 HIS B 185 ALA B 189 5 5 HELIX 19 19 SER B 198 GLU B 207 1 10 SHEET 1 A 6 ASN A 37 GLU A 41 0 SHEET 2 A 6 ILE A 6 GLY A 11 1 N ILE A 8 O ASN A 37 SHEET 3 A 6 TRP A 73 LEU A 77 1 O LEU A 75 N LEU A 9 SHEET 4 A 6 ASN A 119 HIS A 126 -1 O VAL A 125 N PHE A 74 SHEET 5 A 6 TYR A 105 PHE A 108 -1 N PHE A 108 O ASN A 119 SHEET 6 A 6 TYR A 167 HIS A 170 1 O HIS A 170 N THR A 107 SHEET 1 B 3 VAL A 81 VAL A 83 0 SHEET 2 B 3 PHE A 191 HIS A 193 -1 O VAL A 192 N TYR A 82 SHEET 3 B 3 CYS A 177 ILE A 178 1 N CYS A 177 O PHE A 191 SHEET 1 C 6 ASN B 37 TYR B 40 0 SHEET 2 C 6 ILE B 6 SER B 10 1 N ILE B 8 O ASN B 37 SHEET 3 C 6 TRP B 73 LEU B 77 1 O LEU B 75 N LEU B 9 SHEET 4 C 6 VAL B 122 HIS B 126 -1 O VAL B 125 N PHE B 74 SHEET 5 C 6 TYR B 105 PHE B 108 -1 N HIS B 106 O PHE B 124 SHEET 6 C 6 TYR B 167 HIS B 170 1 O HIS B 170 N THR B 107 SHEET 1 D 3 VAL B 81 VAL B 83 0 SHEET 2 D 3 PHE B 191 HIS B 193 -1 O VAL B 192 N TYR B 82 SHEET 3 D 3 CYS B 177 ILE B 178 1 N CYS B 177 O PHE B 191 LINK OD2 ASP A 78 MN MN A 214 1555 1555 2.37 LINK OD2 ASP A 80 MN MN A 214 1555 1555 2.31 LINK NE2 HIS A 193 MN MN A 214 1555 1555 2.25 LINK MN MN A 214 O HOH A 283 1555 1555 2.08 LINK MN MN A 214 O HOH A 284 1555 1555 2.03 LINK OD2 ASP B 78 MN MN B 214 1555 1555 2.18 LINK OD2 ASP B 80 MN MN B 214 1555 1555 2.34 LINK NE2 HIS B 193 MN MN B 214 1555 1555 2.34 LINK MN MN B 214 O1A UPG B 215 1555 1555 2.05 LINK MN MN B 214 O HOH B 225 1555 1555 2.43 LINK MN MN B 214 O HOH B 283 1555 1555 1.99 CISPEP 1 ALA A 111 PRO A 112 0 -6.86 CISPEP 2 ALA A 143 PRO A 144 0 -0.02 CISPEP 3 PHE A 148 PRO A 149 0 0.70 CISPEP 4 PHE B 13 PRO B 14 0 3.05 CISPEP 5 ALA B 111 PRO B 112 0 -5.04 CISPEP 6 ALA B 143 PRO B 144 0 4.04 CISPEP 7 PHE B 148 PRO B 149 0 -2.57 SITE 1 AC1 5 ASP A 78 ASP A 80 HIS A 193 HOH A 283 SITE 2 AC1 5 HOH A 284 SITE 1 AC2 6 ASP B 78 ASP B 80 HIS B 193 UPG B 215 SITE 2 AC2 6 HOH B 225 HOH B 283 SITE 1 AC3 23 GLY B 11 HIS B 12 PHE B 13 LEU B 53 SITE 2 AC3 23 HIS B 54 ARG B 57 TRP B 76 ASP B 78 SITE 3 AC3 23 SER B 79 ASP B 80 ASN B 119 GLN B 152 SITE 4 AC3 23 CYS B 195 ARG B 202 MN B 214 HOH B 220 SITE 5 AC3 23 HOH B 225 HOH B 247 HOH B 259 HOH B 260 SITE 6 AC3 23 HOH B 261 HOH B 281 HOH B 283 CRYST1 126.448 61.776 76.091 90.00 126.56 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007908 0.000000 0.005865 0.00000 SCALE2 0.000000 0.016188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016362 0.00000