HEADER TRANSFERASE 19-MAR-07 2P73 TITLE CRYSTAL STRUCTURE OF A GLYCOSYLTRANSFERASE INVOLVED IN THE TITLE 2 GLYCOSYLATION OF THE MAJOR CAPSID OF PBCV-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSYLTRANSFERASE (MANNOSYLTRANSFERASE) INVOLVED COMPND 3 IN GLYCOSYLATING THE PBCV-1 MAJOR CAPSID PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: N-TERMINAL FRAGMENT; COMPND 6 SYNONYM: VP54; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAMECIUM BURSARIA CHLORELLA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 10506; SOURCE 4 GENE: A64R; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB-1 KEYWDS GLYCOSYLTRANSFERASE, PBCV-1 A64R, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,Y.XIANG,J.L.VAN ETTEN,M.G.ROSSMANN REVDAT 6 21-FEB-24 2P73 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2P73 1 REMARK REVDAT 4 13-JUL-11 2P73 1 VERSN REVDAT 3 24-FEB-09 2P73 1 VERSN REVDAT 2 16-OCT-07 2P73 1 JRNL REVDAT 1 21-AUG-07 2P73 0 JRNL AUTH Y.ZHANG,Y.XIANG,J.L.VAN ETTEN,M.G.ROSSMANN JRNL TITL STRUCTURE AND FUNCTION OF A CHLORELLA VIRUS-ENCODED JRNL TITL 2 GLYCOSYLTRANSFERASE. JRNL REF STRUCTURE V. 15 1031 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17850743 JRNL DOI 10.1016/J.STR.2007.07.006 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 9530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 450 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 569 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1699 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.70000 REMARK 3 B22 (A**2) : -1.03000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.417 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1786 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2446 ; 1.282 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 5.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.945 ;23.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;13.488 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1388 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 767 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1197 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 60 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.012 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1073 ; 0.680 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1700 ; 1.099 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 845 ; 1.519 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 746 ; 2.291 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6385 13.0032 5.6931 REMARK 3 T TENSOR REMARK 3 T11: -0.0305 T22: -0.0858 REMARK 3 T33: -0.0809 T12: -0.0101 REMARK 3 T13: 0.0183 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.5424 L22: 1.1711 REMARK 3 L33: 1.6559 L12: -0.3437 REMARK 3 L13: -1.0553 L23: -0.6037 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0404 S13: -0.0466 REMARK 3 S21: 0.0556 S22: 0.0453 S23: 0.0128 REMARK 3 S31: -0.0898 S32: -0.0443 S33: -0.0587 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 214 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8414 6.9238 1.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.7461 T22: 0.6023 REMARK 3 T33: 0.6943 T12: 0.2886 REMARK 3 T13: -0.4084 T23: -0.2653 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2P73 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9682 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.76750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 210 REMARK 465 THR A 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 SER A 43 CB OG REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLU A 49 CD OE1 OE2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 LYS A 86 CE NZ REMARK 470 GLU A 142 CD OE1 OE2 REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 110 27.26 -141.10 REMARK 500 TYR A 150 -131.51 69.81 REMARK 500 ASN A 176 59.13 -140.56 REMARK 500 MET A 194 48.42 -86.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 214 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD2 REMARK 620 2 ASP A 80 OD2 158.1 REMARK 620 3 ASP A 80 OD1 107.5 51.3 REMARK 620 4 HIS A 193 NE2 101.1 88.3 96.6 REMARK 620 5 UDP A 411 O1A 91.5 80.7 81.5 167.3 REMARK 620 6 UDP A 411 O1B 99.4 100.0 149.3 92.4 83.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P6W RELATED DB: PDB REMARK 900 RELATED ID: 2P72 RELATED DB: PDB DBREF 2P73 A 1 211 UNP Q89399 Q89399_PBCV1 1 211 SEQADV 2P73 ALA A -1 UNP Q89399 CLONING ARTIFACT SEQADV 2P73 SER A 0 UNP Q89399 CLONING ARTIFACT SEQRES 1 A 213 ALA SER MET THR THR PRO CYS ILE THR ILE LEU SER GLY SEQRES 2 A 213 HIS PHE PRO LYS GLU THR ILE TYR ALA ARG LYS THR LYS SEQRES 3 A 213 GLU LEU VAL GLU GLU TYR CYS SER ILE HIS GLY TYR ASN SEQRES 4 A 213 PHE TYR TYR GLU GLU SER GLU PRO LEU GLU THR GLU GLU SEQRES 5 A 213 HIS ALA LEU HIS PHE ARG ARG SER TRP ILE ILE GLN GLN SEQRES 6 A 213 ALA ALA GLU LYS PHE PRO SER THR GLU TRP PHE LEU TRP SEQRES 7 A 213 LEU ASP SER ASP VAL TYR VAL ASN PRO LYS ASN LYS ASN SEQRES 8 A 213 LYS PRO ILE THR SER PHE ILE ASP LEU SER ASP PRO ASN SEQRES 9 A 213 ILE LEU TYR HIS THR PHE HIS GLU ALA PRO TRP GLY SER SEQRES 10 A 213 TYR PRO ILE ASN THR GLY VAL LYS PHE VAL HIS LYS ASP SEQRES 11 A 213 ALA LEU GLU ILE GLU LYS ILE VAL TRP SER LEU ARG ASN SEQRES 12 A 213 GLU ALA PRO TRP ASN THR PHE PRO TYR GLU GLN LYS THR SEQRES 13 A 213 VAL TYR GLU TYR VAL PHE PRO ARG ILE PRO GLY ARG TYR SEQRES 14 A 213 ILE VAL HIS ASP PRO TYR THR LEU ASN CYS ILE VAL LYS SEQRES 15 A 213 ALA TYR PRO GLU HIS VAL LYS ASP ALA LEU PHE VAL HIS SEQRES 16 A 213 MET CYS GLY THR SER ARG ALA GLU ARG ASP GLU HIS MET SEQRES 17 A 213 GLU MET VAL ALA THR HET MN A 214 1 HET UDP A 411 25 HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 HOH *35(H2 O) HELIX 1 1 THR A 17 GLY A 35 1 19 HELIX 2 2 GLU A 49 ARG A 56 1 8 HELIX 3 3 ARG A 56 PHE A 68 1 13 HELIX 4 4 PRO A 91 PHE A 95 5 5 HELIX 5 5 ALA A 129 LEU A 139 1 11 HELIX 6 6 TYR A 150 TYR A 158 1 9 HELIX 7 7 TYR A 158 ILE A 163 1 6 HELIX 8 8 HIS A 185 ALA A 189 5 5 HELIX 9 9 SER A 198 VAL A 209 1 12 SHEET 1 A 6 ASN A 37 GLU A 41 0 SHEET 2 A 6 ILE A 6 GLY A 11 1 N ILE A 8 O TYR A 39 SHEET 3 A 6 TRP A 73 LEU A 77 1 O LEU A 75 N THR A 7 SHEET 4 A 6 VAL A 122 HIS A 126 -1 O VAL A 125 N PHE A 74 SHEET 5 A 6 TYR A 105 PHE A 108 -1 N HIS A 106 O PHE A 124 SHEET 6 A 6 TYR A 167 HIS A 170 1 O ILE A 168 N THR A 107 SHEET 1 B 3 VAL A 81 VAL A 83 0 SHEET 2 B 3 PHE A 191 HIS A 193 -1 O VAL A 192 N TYR A 82 SHEET 3 B 3 CYS A 177 ILE A 178 1 N CYS A 177 O PHE A 191 LINK OD2 ASP A 78 MN MN A 214 1555 1555 2.40 LINK OD2 ASP A 80 MN MN A 214 1555 1555 2.68 LINK OD1 ASP A 80 MN MN A 214 1555 1555 2.32 LINK NE2 HIS A 193 MN MN A 214 1555 1555 2.11 LINK MN MN A 214 O1A UDP A 411 1555 1555 2.25 LINK MN MN A 214 O1B UDP A 411 1555 1555 2.36 CISPEP 1 PHE A 13 PRO A 14 0 0.03 CISPEP 2 ALA A 111 PRO A 112 0 -7.66 CISPEP 3 ALA A 143 PRO A 144 0 3.84 CISPEP 4 PHE A 148 PRO A 149 0 17.22 SITE 1 AC1 4 ASP A 78 ASP A 80 HIS A 193 UDP A 411 SITE 1 AC2 15 GLY A 11 HIS A 12 PHE A 13 LEU A 53 SITE 2 AC2 15 HIS A 54 ARG A 57 TRP A 76 ASP A 78 SITE 3 AC2 15 SER A 79 ASP A 80 HIS A 193 CYS A 195 SITE 4 AC2 15 GLY A 196 ARG A 202 MN A 214 CRYST1 43.375 63.535 44.760 90.00 114.03 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023055 0.000000 0.010279 0.00000 SCALE2 0.000000 0.015739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024461 0.00000