data_2P7E # _entry.id 2P7E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2P7E pdb_00002p7e 10.2210/pdb2p7e/pdb NDB UR0117 ? ? RCSB RCSB042059 ? ? WWPDB D_1000042059 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2OUE ;A related minimal, all-RNA hairpin ribozyme construct solved to 2.05 angstroms resolution with waters identified in the active site. ; unspecified PDB 1M5O 'A 4-WAY JUNCTION VARIANT OF THE HAIRPIN RIBOZYME CRYSTALLIZED WITH VANADATE AT THE ACTIVE SITE' unspecified PDB 2P7D . unspecified PDB 2P7F . unspecified # _pdbx_database_status.entry_id 2P7E _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.recvd_initial_deposition_date 2007-03-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Torelli, A.T.' 1 'Krucinska, J.' 2 'Wedekind, J.E.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization ; Rna 13 1052 1070 2007 RNARFU UK 1355-8382 2122 ? 17488874 10.1261/rna.510807 1 'Water in the active site of an all-RNA hairpin ribozyme and effects of Gua8 base variants on the geometry of phosphoryl transfer.' Biochemistry 45 686 700 2006 BICHAW US 0006-2960 0033 ? 16411744 10.1021/bi051887k 2 ;Conformational heterogeneity at position U37 of an all-RNA hairpin ribozyme with implications for metal binding and the catalytic structure of the S-turn. ; Biochemistry 44 14396 14408 2005 BICHAW US 0006-2960 0033 ? 16262240 10.1021/bi051550i # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Torelli, A.T.' 1 ? primary 'Krucinska, J.' 2 ? primary 'Wedekind, J.E.' 3 ? 1 'Salter, J.' 4 ? 1 'Krucinska, J.' 5 ? 1 'Alam, S.' 6 ? 1 'Grum-Tokars, V.' 7 ? 1 'Wedekind, J.E.' 8 ? 2 'Alam, S.' 9 ? 2 'Grum-Tokars, V.' 10 ? 2 'Krucinska, J.' 11 ? 2 'Kundracik, M.L.' 12 ? 2 'Wedekind, J.E.' 13 ? # _cell.entry_id 2P7E _cell.length_a 94.1 _cell.length_b 94.1 _cell.length_c 132.4 _cell.angle_alpha 90.0 _cell.angle_beta 90.0 _cell.angle_gamma 120.0 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P7E _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 178 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;5' substrate strand, pentameric fragment ; 1587.893 1 ? ? ? ;vanadium oxide at the 2' and 3' oxygens of the 3'-end A ; 2 polymer syn 'Ribozyme strand I' 4182.585 1 ? ? ? ;domain-linking residue S9L at the 3'-end ; 3 polymer syn 'Ribozyme strand II' 5535.445 1 ? ? ? ;domain-linking residue S9L at the 5'-end ; 4 polymer syn 'Ribozyme strand III' 5991.568 1 ? ? ? 'contains the S-turn' 5 polymer syn ;3' substrate strand, octameric fragment ; 2501.553 1 ? ? ? ;vanadium oxide at the O5' oxygen of the 5'-end ; 6 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 7 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 2 ? ? ? ? 8 water nat water 18.015 61 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes 'UCCC(AVC)' UCCCA A ? 2 'polydeoxyribonucleotide/polyribonucleotide hybrid' no yes 'CGGUGAGAAGGG(S9L)' CGGUGAGAAGGGX B ? 3 polyribonucleotide no no GGCAGAGAAACACACGA GGCAGAGAAACACACGA C ? 4 polyribonucleotide no no UCGUGGUACAUUACCUGCC UCGUGGUACAUUACCUGCC D ? 5 polyribonucleotide no no GUCCACCG GUCCACCG P ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 C n 1 3 C n 1 4 C n 1 5 AVC n 2 1 C n 2 2 G n 2 3 G n 2 4 U n 2 5 G n 2 6 A n 2 7 G n 2 8 A n 2 9 A n 2 10 G n 2 11 G n 2 12 G n 2 13 S9L n 3 1 G n 3 2 G n 3 3 C n 3 4 A n 3 5 G n 3 6 A n 3 7 G n 3 8 A n 3 9 A n 3 10 A n 3 11 C n 3 12 A n 3 13 C n 3 14 A n 3 15 C n 3 16 G n 3 17 A n 4 1 U n 4 2 C n 4 3 G n 4 4 U n 4 5 G n 4 6 G n 4 7 U n 4 8 A n 4 9 C n 4 10 A n 4 11 U n 4 12 U n 4 13 A n 4 14 C n 4 15 C n 4 16 U n 4 17 G n 4 18 C n 4 19 C n 5 1 G n 5 2 U n 5 3 C n 5 4 C n 5 5 A n 5 6 C n 5 7 C n 5 8 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'sequence occurs naturally in tobacco ringspot virus satellite RNA' 2 1 sample ? ? ? ? ? 'sequence occurs naturally in tobacco ringspot virus satellite RNA' 3 1 sample ? ? ? ? ? 'sequence occurs naturally in tobacco ringspot virus satellite RNA' 4 1 sample ? ? ? ? ? 'sequence occurs naturally in tobacco ringspot virus satellite RNA' 5 1 sample ? ? ? ? ? 'sequence occurs naturally in tobacco ringspot virus satellite RNA' # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 2P7E 2P7E ? ? ? 2 2 PDB 2P7E 2P7E ? ? ? 3 3 PDB 2P7E 2P7E ? ? ? 4 4 PDB 2P7E 2P7E ? ? ? 5 5 PDB 2P7E 2P7E ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2P7E A 1 ? 5 ? 2P7E 1 ? 5 ? 1 5 2 2 2P7E B 1 ? 13 ? 2P7E 2 ? 14 ? 2 14 3 3 2P7E C 1 ? 17 ? 2P7E 15 ? 31 ? 15 31 4 4 2P7E D 1 ? 19 ? 2P7E 31 ? 49 ? 31 49 5 5 2P7E P 1 ? 8 ? 2P7E 6 ? 13 ? 6 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AVC 'RNA linking' n "ADENOSINE-5'-MONOPHOSPHATE-2',3'-VANADATE" ? 'C10 H13 N5 O9 P V' 429.154 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 S9L non-polymer . '2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE' ? 'C6 H15 O7 P' 230.153 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2P7E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.27 _exptl_crystal.density_percent_sol 80.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;250 mM Li2SO4, 2.5 mM [Co(NH3)6]Cl3, 2 mM spermidine-HCl, 4.5 mM ammonium metavanadate, 100 mM sodium cacodylate buffer and 20% PEG 2000 MME, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 Li2SO4 ? ? ? 1 2 1 '[Co(NH3)6]Cl3' ? ? ? 1 3 1 spermidine-HCl ? ? ? 1 4 1 'ammonium metavanadate' ? ? ? 1 5 1 'sodium cacodylate' ? ? ? 1 6 1 'PEG 2000 MME' ? ? ? 1 7 2 Li2SO4 ? ? ? 1 8 2 spermidine-HCl ? ? ? 1 9 2 'PEG 2000 MME' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-04-12 _diffrn_detector.details 'Vertical focusing mirror; single crystal Si(311) bent monochromator (horizontal focusing)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Side-scattering cuberoot I-beam bent single crystal; asymmetric cut 12.2 degs' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98789 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98789 # _reflns.entry_id 2P7E _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.67 _reflns.d_resolution_high 2.05 _reflns.number_obs 21610 _reflns.number_all 21610 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_netI_over_sigmaI 14.9 _reflns.B_iso_Wilson_estimate 52.6 _reflns.pdbx_redundancy 5.45 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_all 85.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.429 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 4.86 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2P7E _refine.ls_number_reflns_obs 21580 _refine.ls_number_reflns_all 21580 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2624271.15 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.93 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 96.4 _refine.ls_R_factor_obs 0.2591 _refine.ls_R_factor_all 0.2591 _refine.ls_R_factor_R_work 0.258 _refine.ls_R_factor_R_free 0.271 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 1046 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 61.0 _refine.aniso_B[1][1] -5.99 _refine.aniso_B[2][2] -5.99 _refine.aniso_B[3][3] 11.98 _refine.aniso_B[1][2] 1.25 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.316013 _refine.solvent_model_param_bsol 55.4615 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1ZFR' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Parkinson et al. Acta Cryst.D,52,57 (1996)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2P7E _refine_analyze.Luzzati_coordinate_error_obs 0.40 _refine_analyze.Luzzati_sigma_a_obs 0.81 _refine_analyze.Luzzati_d_res_low_obs 30.67 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.76 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1350 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 1430 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 29.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.77 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.05 _refine_ls_shell.d_res_low 2.18 _refine_ls_shell.number_reflns_R_work 3178 _refine_ls_shell.R_factor_R_work 0.609 _refine_ls_shell.percent_reflns_obs 92.1 _refine_ls_shell.R_factor_R_free 0.586 _refine_ls_shell.R_factor_R_free_error 0.047 _refine_ls_shell.percent_reflns_R_free 4.7 _refine_ls_shell.number_reflns_R_free 157 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 dna-rnaATT dna-rnaATT 'X-RAY DIFFRACTION' 2 cobalt.par cobalt.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 &_1_PARAMETER_INFILE_5 &_1_TOPOLOGY_INFILE_5 'X-RAY DIFFRACTION' # _struct.entry_id 2P7E _struct.title 'Vanadate at the Active Site of a Small Ribozyme Suggests a Role for Water in Transition-State Stabilization' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P7E _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'hairpin ribozyme; vanadate; reaction intermediate; transition-state stabilization; active site waters; induced fit, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 7 ? I N N 8 ? J N N 8 ? K N N 8 ? L N N 8 ? M N N 8 ? # _struct_biol.id 1 _struct_biol.details 'The ribozyme-substrate complex in the asymmetric unit also represents the biological unit' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 4 "O3'" ? ? ? 1_555 A AVC 5 P ? ? A C 4 A AVC 5 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? B G 12 "O3'" ? ? ? 1_555 B S9L 13 P ? ? B G 13 B S9L 14 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale3 covale both ? B S9L 13 "O3'" ? ? ? 1_555 C G 1 P ? ? B S9L 14 C G 15 1_555 ? ? ? ? ? ? ? 1.602 ? ? metalc1 metalc ? ? A AVC 5 V ? ? ? 1_555 E G 1 "O5'" ? ? A AVC 5 P G 6 1_555 ? ? ? ? ? ? ? 1.985 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 12 N1 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 12 O6 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 12 N2 ? ? A C 2 B G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 3 B G 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 10 N1 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 10 O6 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 10 N2 ? ? A C 4 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A AVC 5 N3 ? ? ? 1_555 B A 8 N6 ? ? A AVC 5 B A 9 1_555 ? ? ? ? ? ? 'AVC-A MISPAIR' ? ? ? hydrog11 hydrog ? ? A AVC 5 N3 ? ? ? 1_555 B A 9 N6 ? ? A AVC 5 B A 10 1_555 ? ? ? ? ? ? 'AVC-A MISPAIR' ? ? ? hydrog12 hydrog ? ? B C 1 N3 ? ? ? 1_555 E G 8 N1 ? ? B C 2 P G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 1 N4 ? ? ? 1_555 E G 8 O6 ? ? B C 2 P G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 1 O2 ? ? ? 1_555 E G 8 N2 ? ? B C 2 P G 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B G 2 N1 ? ? ? 1_555 E C 7 N3 ? ? B G 3 P C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B G 2 N2 ? ? ? 1_555 E C 7 O2 ? ? B G 3 P C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B G 2 O6 ? ? ? 1_555 E C 7 N4 ? ? B G 3 P C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B G 3 N1 ? ? ? 1_555 E C 6 N3 ? ? B G 4 P C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B G 3 N2 ? ? ? 1_555 E C 6 O2 ? ? B G 4 P C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B G 3 O6 ? ? ? 1_555 E C 6 N4 ? ? B G 4 P C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B U 4 N3 ? ? ? 1_555 E A 5 N1 ? ? B U 5 P A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B U 4 O4 ? ? ? 1_555 E A 5 N6 ? ? B U 5 P A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 5 N1 ? ? ? 1_555 E C 4 N3 ? ? B G 6 P C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 5 N2 ? ? ? 1_555 E C 4 O2 ? ? B G 6 P C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 5 O6 ? ? ? 1_555 E C 4 N4 ? ? B G 6 P C 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B A 6 N1 ? ? ? 1_555 E C 3 N4 ? ? B A 7 P C 8 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog27 hydrog ? ? B G 7 N2 A ? ? 1_555 E U 2 O4 ? ? B G 8 P U 7 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog28 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 19 N3 ? ? C G 15 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 19 O2 ? ? C G 15 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 19 N4 ? ? C G 15 D C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 18 N3 ? ? C G 16 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 18 O2 ? ? C G 16 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 18 N4 ? ? C G 16 D C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C C 3 N3 ? ? ? 1_555 D G 17 N1 ? ? C C 17 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C C 3 N4 ? ? ? 1_555 D G 17 O6 ? ? C C 17 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C C 3 O2 ? ? ? 1_555 D G 17 N2 ? ? C C 17 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C A 4 N1 ? ? ? 1_555 D U 16 N3 ? ? C A 18 D U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C A 4 N6 ? ? ? 1_555 D U 16 O4 ? ? C A 18 D U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 19 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 19 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 19 D C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C A 6 N1 ? ? ? 1_555 D C 14 N4 ? ? C A 20 D C 44 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog43 hydrog ? ? C G 7 N2 ? ? ? 1_555 D A 13 N7 ? ? C G 21 D A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? C G 7 N3 ? ? ? 1_555 D A 13 N6 ? ? C G 21 D A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? C A 8 N6 ? ? ? 1_555 D U 11 O2 ? ? C A 22 D U 41 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog46 hydrog ? ? C A 8 N7 ? ? ? 1_555 D U 11 N3 ? ? C A 22 D U 41 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? C A 9 N6 ? ? ? 1_555 D A 10 N1 ? ? C A 23 D A 40 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog48 hydrog ? ? C A 9 N7 ? ? ? 1_555 D A 10 N6 ? ? C A 23 D A 40 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog49 hydrog ? ? C A 10 N6 ? ? ? 1_555 D A 8 N7 ? ? C A 24 D A 38 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog50 hydrog ? ? C C 11 N3 ? ? ? 1_555 E G 1 N1 ? ? C C 25 P G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C C 11 N4 ? ? ? 1_555 E G 1 O6 ? ? C C 25 P G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 11 O2 ? ? ? 1_555 E G 1 N2 ? ? C C 25 P G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C A 12 N1 ? ? ? 1_555 D G 6 N1 ? ? C A 26 D G 36 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog54 hydrog ? ? C A 12 N6 ? ? ? 1_555 D G 6 O6 ? ? C A 26 D G 36 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog55 hydrog ? ? C C 13 N3 ? ? ? 1_555 D G 5 N1 ? ? C C 27 D G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C C 13 N4 ? ? ? 1_555 D G 5 O6 ? ? C C 27 D G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C C 13 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 27 D G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C A 14 N1 ? ? ? 1_555 D U 4 N3 ? ? C A 28 D U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C A 14 N6 ? ? ? 1_555 D U 4 O4 ? ? C A 28 D U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 15 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 29 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C C 15 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 29 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C C 15 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 29 D G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 16 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 30 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 16 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 30 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 16 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 30 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C A 17 N1 ? ? ? 1_555 D U 1 N3 ? ? C A 31 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C A 17 N6 ? ? ? 1_555 D U 1 O4 ? ? C A 31 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 103 ? 5 'BINDING SITE FOR RESIDUE SO4 A 103' AC2 Software C NCO 101 ? 4 'BINDING SITE FOR RESIDUE NCO C 101' AC3 Software B NCO 102 ? 6 'BINDING SITE FOR RESIDUE NCO B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 U A 1 ? U A 1 . ? 1_555 ? 2 AC1 5 C A 2 ? C A 2 . ? 1_555 ? 3 AC1 5 HOH I . ? HOH A 108 . ? 1_555 ? 4 AC1 5 HOH I . ? HOH A 109 . ? 1_555 ? 5 AC1 5 NCO G . ? NCO B 102 . ? 1_555 ? 6 AC2 4 A C 6 ? A C 20 . ? 1_555 ? 7 AC2 4 G C 7 ? G C 21 . ? 1_555 ? 8 AC2 4 A D 10 ? A D 40 . ? 1_555 ? 9 AC2 4 U D 11 ? U D 41 . ? 1_555 ? 10 AC3 6 C A 2 ? C A 2 . ? 1_555 ? 11 AC3 6 C A 3 ? C A 3 . ? 1_555 ? 12 AC3 6 SO4 F . ? SO4 A 103 . ? 1_555 ? 13 AC3 6 G B 10 ? G B 11 . ? 1_555 ? 14 AC3 6 G B 11 ? G B 12 . ? 1_555 ? 15 AC3 6 G B 12 ? G B 13 . ? 1_555 ? # _atom_sites.entry_id 2P7E _atom_sites.fract_transf_matrix[1][1] 0.010627 _atom_sites.fract_transf_matrix[1][2] 0.006135 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012271 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007553 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P S V # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 AVC 5 5 5 AVC AVC A . n B 2 1 C 1 2 2 C C B . n B 2 2 G 2 3 3 G G B . n B 2 3 G 3 4 4 G G B . n B 2 4 U 4 5 5 U U B . n B 2 5 G 5 6 6 G G B . n B 2 6 A 6 7 7 A A B . n B 2 7 G 7 8 8 G G B . n B 2 8 A 8 9 9 A A B . n B 2 9 A 9 10 10 A A B . n B 2 10 G 10 11 11 G G B . n B 2 11 G 11 12 12 G G B . n B 2 12 G 12 13 13 G G B . n B 2 13 S9L 13 14 14 S9L S9L B . n C 3 1 G 1 15 15 G G C . n C 3 2 G 2 16 16 G G C . n C 3 3 C 3 17 17 C C C . n C 3 4 A 4 18 18 A A C . n C 3 5 G 5 19 19 G G C . n C 3 6 A 6 20 20 A A C . n C 3 7 G 7 21 21 G G C . n C 3 8 A 8 22 22 A A C . n C 3 9 A 9 23 23 A A C . n C 3 10 A 10 24 24 A A C . n C 3 11 C 11 25 25 C C C . n C 3 12 A 12 26 26 A A C . n C 3 13 C 13 27 27 C C C . n C 3 14 A 14 28 28 A A C . n C 3 15 C 15 29 29 C C C . n C 3 16 G 16 30 30 G G C . n C 3 17 A 17 31 31 A A C . n D 4 1 U 1 31 31 U U D . n D 4 2 C 2 32 32 C C D . n D 4 3 G 3 33 33 G G D . n D 4 4 U 4 34 34 U U D . n D 4 5 G 5 35 35 G G D . n D 4 6 G 6 36 36 G G D . n D 4 7 U 7 37 37 U U D . n D 4 8 A 8 38 38 A A D . n D 4 9 C 9 39 39 C C D . n D 4 10 A 10 40 40 A A D . n D 4 11 U 11 41 41 U U D . n D 4 12 U 12 42 42 U U D . n D 4 13 A 13 43 43 A A D . n D 4 14 C 14 44 44 C C D . n D 4 15 C 15 45 45 C C D . n D 4 16 U 16 46 46 U U D . n D 4 17 G 17 47 47 G G D . n D 4 18 C 18 48 48 C C D . n D 4 19 C 19 49 49 C C D . n E 5 1 G 1 6 6 G G P . n E 5 2 U 2 7 7 U U P . n E 5 3 C 3 8 8 C C P . n E 5 4 C 4 9 9 C C P . n E 5 5 A 5 10 10 A A P . n E 5 6 C 6 11 11 C C P . n E 5 7 C 7 12 12 C C P . n E 5 8 G 8 13 13 G G P . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 SO4 1 103 103 SO4 SO4 A . G 7 NCO 1 102 102 NCO NCO B . H 7 NCO 1 101 101 NCO NCO C . I 8 HOH 1 104 1 HOH HOH A . I 8 HOH 2 105 2 HOH HOH A . I 8 HOH 3 106 7 HOH HOH A . I 8 HOH 4 107 14 HOH HOH A . I 8 HOH 5 108 21 HOH HOH A . I 8 HOH 6 109 54 HOH HOH A . I 8 HOH 7 110 61 HOH HOH A . J 8 HOH 1 16 16 HOH HOH B . J 8 HOH 2 36 36 HOH HOH B . J 8 HOH 3 38 38 HOH HOH B . J 8 HOH 4 40 40 HOH HOH B . J 8 HOH 5 41 41 HOH HOH B . J 8 HOH 6 55 55 HOH HOH B . K 8 HOH 1 102 6 HOH HOH C . K 8 HOH 2 103 9 HOH HOH C . K 8 HOH 3 104 13 HOH HOH C . K 8 HOH 4 105 15 HOH HOH C . K 8 HOH 5 106 17 HOH HOH C . K 8 HOH 6 107 19 HOH HOH C . K 8 HOH 7 108 22 HOH HOH C . K 8 HOH 8 109 23 HOH HOH C . K 8 HOH 9 110 24 HOH HOH C . K 8 HOH 10 111 28 HOH HOH C . K 8 HOH 11 112 29 HOH HOH C . K 8 HOH 12 113 34 HOH HOH C . K 8 HOH 13 114 39 HOH HOH C . K 8 HOH 14 115 43 HOH HOH C . K 8 HOH 15 116 47 HOH HOH C . K 8 HOH 16 117 49 HOH HOH C . K 8 HOH 17 118 53 HOH HOH C . K 8 HOH 18 119 59 HOH HOH C . L 8 HOH 1 50 3 HOH HOH D . L 8 HOH 2 51 4 HOH HOH D . L 8 HOH 3 52 8 HOH HOH D . L 8 HOH 4 53 10 HOH HOH D . L 8 HOH 5 54 11 HOH HOH D . L 8 HOH 6 55 12 HOH HOH D . L 8 HOH 7 56 18 HOH HOH D . L 8 HOH 8 57 20 HOH HOH D . L 8 HOH 9 58 25 HOH HOH D . L 8 HOH 10 59 26 HOH HOH D . L 8 HOH 11 60 27 HOH HOH D . L 8 HOH 12 61 30 HOH HOH D . L 8 HOH 13 62 31 HOH HOH D . L 8 HOH 14 63 33 HOH HOH D . L 8 HOH 15 64 35 HOH HOH D . L 8 HOH 16 65 37 HOH HOH D . L 8 HOH 17 66 42 HOH HOH D . L 8 HOH 18 67 44 HOH HOH D . L 8 HOH 19 68 45 HOH HOH D . L 8 HOH 20 69 46 HOH HOH D . L 8 HOH 21 70 48 HOH HOH D . L 8 HOH 22 71 50 HOH HOH D . L 8 HOH 23 72 51 HOH HOH D . L 8 HOH 24 73 52 HOH HOH D . L 8 HOH 25 74 57 HOH HOH D . L 8 HOH 26 75 58 HOH HOH D . L 8 HOH 27 76 60 HOH HOH D . M 8 HOH 1 5 5 HOH HOH P . M 8 HOH 2 32 32 HOH HOH P . M 8 HOH 3 56 56 HOH HOH P . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id AVC _pdbx_struct_mod_residue.label_seq_id 5 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id AVC _pdbx_struct_mod_residue.auth_seq_id 5 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id U _pdbx_struct_special_symmetry.auth_seq_id 1 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id A _pdbx_struct_special_symmetry.label_comp_id U _pdbx_struct_special_symmetry.label_seq_id 1 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O5'" ? E G 1 ? P G 6 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 "O3'" ? A AVC 5 ? A AVC 5 ? 1_555 81.3 ? 2 "O5'" ? E G 1 ? P G 6 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 "O2'" ? A AVC 5 ? A AVC 5 ? 1_555 153.5 ? 3 "O3'" ? A AVC 5 ? A AVC 5 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 "O2'" ? A AVC 5 ? A AVC 5 ? 1_555 76.6 ? 4 "O5'" ? E G 1 ? P G 6 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 O1V ? A AVC 5 ? A AVC 5 ? 1_555 93.9 ? 5 "O3'" ? A AVC 5 ? A AVC 5 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 O1V ? A AVC 5 ? A AVC 5 ? 1_555 130.0 ? 6 "O2'" ? A AVC 5 ? A AVC 5 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 O1V ? A AVC 5 ? A AVC 5 ? 1_555 89.4 ? 7 "O5'" ? E G 1 ? P G 6 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 O2V ? A AVC 5 ? A AVC 5 ? 1_555 97.8 ? 8 "O3'" ? A AVC 5 ? A AVC 5 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 O2V ? A AVC 5 ? A AVC 5 ? 1_555 121.4 ? 9 "O2'" ? A AVC 5 ? A AVC 5 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 O2V ? A AVC 5 ? A AVC 5 ? 1_555 106.0 ? 10 O1V ? A AVC 5 ? A AVC 5 ? 1_555 V ? A AVC 5 ? A AVC 5 ? 1_555 O2V ? A AVC 5 ? A AVC 5 ? 1_555 108.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-22 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_special_symmetry 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.conn_type_id' 4 4 'Structure model' '_struct_conn.id' 5 4 'Structure model' '_struct_conn.pdbx_dist_value' 6 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 4 'Structure model' '_struct_conn_type.id' 20 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 CNS refinement . ? 2 CrystalClear 'data reduction' . ? 3 CrystalClear 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N9 B G 8 ? B "C1'" B G 8 ? B "C2'" B G 8 ? B 126.81 114.00 12.81 1.30 N 2 1 "O4'" B G 8 ? B "C1'" B G 8 ? B N9 B G 8 ? B 113.51 108.50 5.01 0.70 N 3 1 "C5'" P G 6 ? ? "C4'" P G 6 ? ? "C3'" P G 6 ? ? 105.70 115.20 -9.50 1.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AVC OP3 O N N 38 AVC P P N N 39 AVC OP1 O N N 40 AVC OP2 O N N 41 AVC "O5'" O N N 42 AVC "C5'" C N N 43 AVC "C4'" C N R 44 AVC "O4'" O N N 45 AVC "C3'" C N R 46 AVC "O3'" O N N 47 AVC "C2'" C N R 48 AVC "O2'" O N N 49 AVC "C1'" C N R 50 AVC V V N N 51 AVC O1V O N N 52 AVC O2V O N N 53 AVC N9 N Y N 54 AVC C8 C Y N 55 AVC N7 N Y N 56 AVC C5 C Y N 57 AVC C6 C Y N 58 AVC N6 N N N 59 AVC N1 N Y N 60 AVC C2 C Y N 61 AVC N3 N Y N 62 AVC C4 C Y N 63 AVC HOP3 H N N 64 AVC HOP2 H N N 65 AVC "H5'" H N N 66 AVC "H5''" H N N 67 AVC "H4'" H N N 68 AVC "H3'" H N N 69 AVC "H2'" H N N 70 AVC "H1'" H N N 71 AVC HV H N N 72 AVC H8 H N N 73 AVC H61 H N N 74 AVC H62 H N N 75 AVC H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 NCO CO CO N N 153 NCO N1 N N N 154 NCO N2 N N N 155 NCO N3 N N N 156 NCO N4 N N N 157 NCO N5 N N N 158 NCO N6 N N N 159 NCO HN11 H N N 160 NCO HN12 H N N 161 NCO HN13 H N N 162 NCO HN21 H N N 163 NCO HN22 H N N 164 NCO HN23 H N N 165 NCO HN31 H N N 166 NCO HN32 H N N 167 NCO HN33 H N N 168 NCO HN41 H N N 169 NCO HN42 H N N 170 NCO HN43 H N N 171 NCO HN51 H N N 172 NCO HN52 H N N 173 NCO HN53 H N N 174 NCO HN61 H N N 175 NCO HN62 H N N 176 NCO HN63 H N N 177 S9L O3P O N N 178 S9L P P N N 179 S9L O1P O N N 180 S9L O2P O N N 181 S9L "O5'" O N N 182 S9L C12 C N N 183 S9L C22 C N N 184 S9L OH3 O N N 185 S9L C13 C N N 186 S9L C23 C N N 187 S9L OH4 O N N 188 S9L C14 C N N 189 S9L C24 C N N 190 S9L "O3'" O N N 191 S9L HO3P H N N 192 S9L HO1P H N N 193 S9L H121 H N N 194 S9L H122 H N N 195 S9L H221 H N N 196 S9L H222 H N N 197 S9L H131 H N N 198 S9L H132 H N N 199 S9L H231 H N N 200 S9L H232 H N N 201 S9L H141 H N N 202 S9L H142 H N N 203 S9L H241 H N N 204 S9L H242 H N N 205 S9L "HO3'" H N N 206 SO4 S S N N 207 SO4 O1 O N N 208 SO4 O2 O N N 209 SO4 O3 O N N 210 SO4 O4 O N N 211 U OP3 O N N 212 U P P N N 213 U OP1 O N N 214 U OP2 O N N 215 U "O5'" O N N 216 U "C5'" C N N 217 U "C4'" C N R 218 U "O4'" O N N 219 U "C3'" C N S 220 U "O3'" O N N 221 U "C2'" C N R 222 U "O2'" O N N 223 U "C1'" C N R 224 U N1 N N N 225 U C2 C N N 226 U O2 O N N 227 U N3 N N N 228 U C4 C N N 229 U O4 O N N 230 U C5 C N N 231 U C6 C N N 232 U HOP3 H N N 233 U HOP2 H N N 234 U "H5'" H N N 235 U "H5''" H N N 236 U "H4'" H N N 237 U "H3'" H N N 238 U "HO3'" H N N 239 U "H2'" H N N 240 U "HO2'" H N N 241 U "H1'" H N N 242 U H3 H N N 243 U H5 H N N 244 U H6 H N N 245 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AVC OP3 P sing N N 40 AVC OP3 HOP3 sing N N 41 AVC P OP1 doub N N 42 AVC P OP2 sing N N 43 AVC P "O5'" sing N N 44 AVC OP2 HOP2 sing N N 45 AVC "O5'" "C5'" sing N N 46 AVC "C5'" "C4'" sing N N 47 AVC "C5'" "H5'" sing N N 48 AVC "C5'" "H5''" sing N N 49 AVC "C4'" "O4'" sing N N 50 AVC "C4'" "C3'" sing N N 51 AVC "C4'" "H4'" sing N N 52 AVC "O4'" "C1'" sing N N 53 AVC "C3'" "O3'" sing N N 54 AVC "C3'" "C2'" sing N N 55 AVC "C3'" "H3'" sing N N 56 AVC "O3'" V sing N N 57 AVC "C2'" "O2'" sing N N 58 AVC "C2'" "C1'" sing N N 59 AVC "C2'" "H2'" sing N N 60 AVC "O2'" V sing N N 61 AVC "C1'" N9 sing N N 62 AVC "C1'" "H1'" sing N N 63 AVC V O1V doub N N 64 AVC V O2V sing N N 65 AVC O2V HV sing N N 66 AVC N9 C8 sing Y N 67 AVC N9 C4 sing Y N 68 AVC C8 N7 doub Y N 69 AVC C8 H8 sing N N 70 AVC N7 C5 sing Y N 71 AVC C5 C6 sing Y N 72 AVC C5 C4 doub Y N 73 AVC C6 N6 sing N N 74 AVC C6 N1 doub Y N 75 AVC N6 H61 sing N N 76 AVC N6 H62 sing N N 77 AVC N1 C2 sing Y N 78 AVC C2 N3 doub Y N 79 AVC C2 H2 sing N N 80 AVC N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 NCO CO N1 sing N N 160 NCO CO N2 sing N N 161 NCO CO N3 sing N N 162 NCO CO N4 sing N N 163 NCO CO N5 sing N N 164 NCO CO N6 sing N N 165 NCO N1 HN11 sing N N 166 NCO N1 HN12 sing N N 167 NCO N1 HN13 sing N N 168 NCO N2 HN21 sing N N 169 NCO N2 HN22 sing N N 170 NCO N2 HN23 sing N N 171 NCO N3 HN31 sing N N 172 NCO N3 HN32 sing N N 173 NCO N3 HN33 sing N N 174 NCO N4 HN41 sing N N 175 NCO N4 HN42 sing N N 176 NCO N4 HN43 sing N N 177 NCO N5 HN51 sing N N 178 NCO N5 HN52 sing N N 179 NCO N5 HN53 sing N N 180 NCO N6 HN61 sing N N 181 NCO N6 HN62 sing N N 182 NCO N6 HN63 sing N N 183 S9L O3P P sing N N 184 S9L O3P HO3P sing N N 185 S9L P O2P doub N N 186 S9L P O1P sing N N 187 S9L P "O5'" sing N N 188 S9L O1P HO1P sing N N 189 S9L "O5'" C12 sing N N 190 S9L C12 C22 sing N N 191 S9L C12 H121 sing N N 192 S9L C12 H122 sing N N 193 S9L C22 OH3 sing N N 194 S9L C22 H221 sing N N 195 S9L C22 H222 sing N N 196 S9L OH3 C23 sing N N 197 S9L C13 C23 sing N N 198 S9L C13 OH4 sing N N 199 S9L C13 H131 sing N N 200 S9L C13 H132 sing N N 201 S9L C23 H231 sing N N 202 S9L C23 H232 sing N N 203 S9L OH4 C24 sing N N 204 S9L C14 C24 sing N N 205 S9L C14 "O3'" sing N N 206 S9L C14 H141 sing N N 207 S9L C14 H142 sing N N 208 S9L C24 H241 sing N N 209 S9L C24 H242 sing N N 210 S9L "O3'" "HO3'" sing N N 211 SO4 S O1 doub N N 212 SO4 S O2 doub N N 213 SO4 S O3 sing N N 214 SO4 S O4 sing N N 215 U OP3 P sing N N 216 U OP3 HOP3 sing N N 217 U P OP1 doub N N 218 U P OP2 sing N N 219 U P "O5'" sing N N 220 U OP2 HOP2 sing N N 221 U "O5'" "C5'" sing N N 222 U "C5'" "C4'" sing N N 223 U "C5'" "H5'" sing N N 224 U "C5'" "H5''" sing N N 225 U "C4'" "O4'" sing N N 226 U "C4'" "C3'" sing N N 227 U "C4'" "H4'" sing N N 228 U "O4'" "C1'" sing N N 229 U "C3'" "O3'" sing N N 230 U "C3'" "C2'" sing N N 231 U "C3'" "H3'" sing N N 232 U "O3'" "HO3'" sing N N 233 U "C2'" "O2'" sing N N 234 U "C2'" "C1'" sing N N 235 U "C2'" "H2'" sing N N 236 U "O2'" "HO2'" sing N N 237 U "C1'" N1 sing N N 238 U "C1'" "H1'" sing N N 239 U N1 C2 sing N N 240 U N1 C6 sing N N 241 U C2 O2 doub N N 242 U C2 N3 sing N N 243 U N3 C4 sing N N 244 U N3 H3 sing N N 245 U C4 O4 doub N N 246 U C4 C5 sing N N 247 U C5 C6 doub N N 248 U C5 H5 sing N N 249 U C6 H6 sing N N 250 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2P7E 'double helix' 2P7E 'a-form double helix' 2P7E 'bulge loop' 2P7E 'mismatched base pair' 2P7E 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 B G 12 1_555 0.198 -0.371 -0.309 6.360 -18.470 -0.090 1 A_C2:G13_B A 2 ? B 13 ? 19 1 1 A C 3 1_555 B G 11 1_555 0.062 -0.380 -0.147 -1.227 -7.931 -2.549 2 A_C3:G12_B A 3 ? B 12 ? 19 1 1 A C 4 1_555 B G 10 1_555 0.495 -0.223 0.012 2.120 3.491 2.569 3 A_C4:G11_B A 4 ? B 11 ? 19 1 1 A AVC 5 1_555 B A 8 1_555 6.675 -4.037 -0.329 8.441 -0.635 -29.697 4 A_AVC5:A9_B A 5 ? B 9 ? ? 10 1 E U 2 1_555 B G 7 1_555 -8.164 -2.444 0.010 6.119 10.225 -0.603 5 P_U7:G8_B P 7 ? B 8 ? ? ? 1 E C 3 1_555 B A 6 1_555 -1.868 0.489 -0.585 15.494 -14.915 5.283 6 P_C8:A7_B P 8 ? B 7 ? ? ? 1 E C 4 1_555 B G 5 1_555 0.122 0.032 0.073 8.675 -14.318 3.198 7 P_C9:G6_B P 9 ? B 6 ? 19 1 1 E A 5 1_555 B U 4 1_555 0.570 -0.087 0.545 9.694 -10.417 -1.445 8 P_A10:U5_B P 10 ? B 5 ? 20 1 1 E C 6 1_555 B G 3 1_555 0.215 -0.142 0.449 1.610 -12.272 3.342 9 P_C11:G4_B P 11 ? B 4 ? 19 1 1 E C 7 1_555 B G 2 1_555 0.263 -0.401 0.367 0.448 -14.658 -3.549 10 P_C12:G3_B P 12 ? B 3 ? 19 1 1 E G 8 1_555 B C 1 1_555 0.346 -0.104 0.080 -0.175 -9.565 2.736 11 P_G13:C2_B P 13 ? B 2 ? 19 1 1 C G 1 1_555 D C 19 1_555 -0.422 -0.064 0.731 7.740 -8.889 -1.442 12 C_G15:C49_D C 15 ? D 49 ? 19 1 1 C G 2 1_555 D C 18 1_555 -0.251 -0.226 0.365 13.388 -12.826 -3.227 13 C_G16:C48_D C 16 ? D 48 ? 19 1 1 C C 3 1_555 D G 17 1_555 -0.118 -0.104 0.068 4.645 -15.137 1.269 14 C_C17:G47_D C 17 ? D 47 ? 19 1 1 C A 4 1_555 D U 16 1_555 -0.293 -0.026 0.124 0.584 -11.281 3.380 15 C_A18:U46_D C 18 ? D 46 ? 20 1 1 C G 5 1_555 D C 15 1_555 -0.397 -0.208 -0.368 -7.172 -7.400 2.861 16 C_G19:C45_D C 19 ? D 45 ? 19 1 1 C A 6 1_555 D C 14 1_555 2.261 0.208 -0.352 -14.199 -3.190 15.771 17 C_A20:C44_D C 20 ? D 44 ? ? 1 1 C G 7 1_555 D A 13 1_555 7.014 -4.558 -0.041 -7.662 2.600 -4.447 18 C_G21:A43_D C 21 ? D 43 ? 11 10 1 C A 8 1_555 D U 11 1_555 -4.110 -1.767 -0.094 -3.530 -9.884 -101.191 19 C_A22:U41_D C 22 ? D 41 ? 24 4 1 C A 9 1_555 D A 10 1_555 -4.258 1.115 -0.223 0.690 -18.955 -100.202 20 C_A23:A40_D C 23 ? D 40 ? 5 4 1 C A 10 1_555 D A 8 1_555 5.153 3.527 -0.399 -0.734 -16.073 -159.077 21 C_A24:A38_D C 24 ? D 38 ? ? ? 1 C C 11 1_555 E G 1 1_555 0.145 -0.205 0.126 17.661 -12.224 -1.228 22 C_C25:G6_P C 25 ? P 6 ? 19 1 1 C A 12 1_555 D G 6 1_555 0.210 1.344 -0.508 -8.919 -16.270 -17.585 23 C_A26:G36_D C 26 ? D 36 ? 8 ? 1 C C 13 1_555 D G 5 1_555 0.188 -0.154 0.233 3.681 -19.966 0.891 24 C_C27:G35_D C 27 ? D 35 ? 19 1 1 C A 14 1_555 D U 4 1_555 0.097 -0.243 0.419 6.174 -18.879 0.752 25 C_A28:U34_D C 28 ? D 34 ? 20 1 1 C C 15 1_555 D G 3 1_555 -0.003 -0.255 0.169 3.897 -13.563 0.774 26 C_C29:G33_D C 29 ? D 33 ? 19 1 1 C G 16 1_555 D C 2 1_555 -0.206 -0.157 0.053 -8.041 -14.670 -3.294 27 C_G30:C32_D C 30 ? D 32 ? 19 1 1 C A 17 1_555 D U 1 1_555 0.178 0.012 0.075 -3.983 -5.554 2.262 28 C_A31:U31_D C 31 ? D 31 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 B G 12 1_555 A C 3 1_555 B G 11 1_555 -0.648 -1.775 3.536 -1.124 9.731 31.237 -4.845 0.955 2.889 17.539 2.026 32.701 1 AA_C2C3:G12G13_BB A 2 ? B 13 ? A 3 ? B 12 ? 1 A C 3 1_555 B G 11 1_555 A C 4 1_555 B G 10 1_555 0.813 -1.647 3.374 1.587 8.531 29.345 -4.761 -1.237 2.833 16.393 -3.049 30.574 2 AA_C3C4:G11G12_BB A 3 ? B 12 ? A 4 ? B 11 ? 1 A C 4 1_555 B G 10 1_555 A AVC 5 1_555 B A 8 1_555 -0.020 -1.074 5.280 -2.902 30.050 73.209 -2.178 -0.112 4.630 24.226 2.339 78.377 3 AA_C4AVC5:A9G11_BB A 4 ? B 11 ? A 5 ? B 9 ? 1 A AVC 5 1_555 B A 8 1_555 E U 2 1_555 B G 7 1_555 -0.654 0.378 3.490 6.998 1.080 9.880 0.405 12.050 2.497 5.444 -35.279 12.150 4 AP_AVC5U7:G8A9_BB A 5 ? B 9 ? P 7 ? B 8 ? 1 E U 2 1_555 B G 7 1_555 E C 3 1_555 B A 6 1_555 -0.045 -0.631 3.096 -5.788 12.411 54.144 -1.343 -0.263 2.889 13.396 6.247 55.722 5 PP_U7C8:A7G8_BB P 7 ? B 8 ? P 8 ? B 7 ? 1 E C 3 1_555 B A 6 1_555 E C 4 1_555 B G 5 1_555 -0.198 -1.455 3.511 -6.731 6.119 37.778 -2.970 -0.560 3.232 9.287 10.216 38.819 6 PP_C8C9:G6A7_BB P 8 ? B 7 ? P 9 ? B 6 ? 1 E C 4 1_555 B G 5 1_555 E A 5 1_555 B U 4 1_555 -0.645 -1.801 2.972 -4.847 8.574 35.124 -3.902 0.454 2.541 13.874 7.844 36.437 7 PP_C9A10:U5G6_BB P 9 ? B 6 ? P 10 ? B 5 ? 1 E A 5 1_555 B U 4 1_555 E C 6 1_555 B G 3 1_555 -0.018 -2.007 3.427 -0.288 3.028 26.492 -5.154 -0.038 3.181 6.579 0.626 26.662 8 PP_A10C11:G4U5_BB P 10 ? B 5 ? P 11 ? B 4 ? 1 E C 6 1_555 B G 3 1_555 E C 7 1_555 B G 2 1_555 -0.142 -2.207 3.133 1.518 5.032 32.164 -4.728 0.492 2.756 9.008 -2.718 32.579 9 PP_C11C12:G3G4_BB P 11 ? B 4 ? P 12 ? B 3 ? 1 E C 7 1_555 B G 2 1_555 E G 8 1_555 B C 1 1_555 0.239 -1.943 3.085 3.847 10.551 32.720 -4.673 0.109 2.375 18.078 -6.591 34.544 10 PP_C12G13:C2G3_BB P 12 ? B 3 ? P 13 ? B 2 ? 1 C G 1 1_555 D C 19 1_555 C G 2 1_555 D C 18 1_555 -0.681 -1.212 3.088 -0.676 4.909 34.324 -2.728 1.047 2.904 8.265 1.139 34.669 11 CC_G15G16:C48C49_DD C 15 ? D 49 ? C 16 ? D 48 ? 1 C G 2 1_555 D C 18 1_555 C C 3 1_555 D G 17 1_555 0.424 -1.289 3.510 1.837 8.421 33.770 -3.475 -0.420 3.126 14.211 -3.099 34.822 12 CC_G16C17:G47C48_DD C 16 ? D 48 ? C 17 ? D 47 ? 1 C C 3 1_555 D G 17 1_555 C A 4 1_555 D U 16 1_555 0.376 -1.836 3.261 -1.606 10.869 31.229 -4.887 -0.907 2.479 19.451 2.873 33.060 13 CC_C17A18:U46G47_DD C 17 ? D 47 ? C 18 ? D 46 ? 1 C A 4 1_555 D U 16 1_555 C G 5 1_555 D C 15 1_555 0.190 -2.007 3.502 2.564 7.614 30.105 -5.192 0.135 2.924 14.341 -4.829 31.135 14 CC_A18G19:C45U46_DD C 18 ? D 46 ? C 19 ? D 45 ? 1 C G 5 1_555 D C 15 1_555 C A 6 1_555 D C 14 1_555 0.960 -1.421 3.434 1.652 7.818 39.062 -3.004 -1.215 3.139 11.546 -2.439 39.840 15 CC_G19A20:C44C45_DD C 19 ? D 45 ? C 20 ? D 44 ? 1 C A 6 1_555 D C 14 1_555 C G 7 1_555 D A 13 1_555 -0.484 -1.037 3.196 5.277 5.081 59.121 -1.289 0.742 3.056 5.128 -5.326 59.533 16 CC_A20G21:A43C44_DD C 20 ? D 44 ? C 21 ? D 43 ? 1 C G 7 1_555 D A 13 1_555 C A 8 1_555 D U 11 1_555 -2.376 -0.554 3.408 3.290 -1.924 12.370 -0.392 14.071 2.738 -8.662 -14.814 12.942 17 CC_G21A22:U41A43_DD C 21 ? D 43 ? C 22 ? D 41 ? 1 C A 8 1_555 D U 11 1_555 C A 9 1_555 D A 10 1_555 -0.107 -2.337 3.459 -8.764 3.870 44.437 -3.380 -0.663 3.219 5.047 11.431 45.407 18 CC_A22A23:A40U41_DD C 22 ? D 41 ? C 23 ? D 40 ? 1 C A 9 1_555 D A 10 1_555 C A 10 1_555 D A 8 1_555 -3.463 -3.256 3.670 -5.597 2.345 74.537 -2.765 2.655 3.795 1.933 4.614 74.747 19 CC_A23A24:A38A40_DD C 23 ? D 40 ? C 24 ? D 38 ? 1 C C 11 1_555 E G 1 1_555 C A 12 1_555 D G 6 1_555 0.292 -2.053 3.840 5.506 5.053 48.160 -2.933 0.130 3.631 6.149 -6.700 48.702 20 CC_C25A26:G36G6_DP C 25 ? P 6 ? C 26 ? D 36 ? 1 C A 12 1_555 D G 6 1_555 C C 13 1_555 D G 5 1_555 1.135 -0.658 3.028 -5.861 3.889 29.270 -1.968 -3.243 2.648 7.559 11.393 30.085 21 CC_A26C27:G35G36_DD C 26 ? D 36 ? C 27 ? D 35 ? 1 C C 13 1_555 D G 5 1_555 C A 14 1_555 D U 4 1_555 0.205 -1.162 3.097 -0.170 7.101 34.796 -2.855 -0.359 2.812 11.722 0.280 35.491 22 CC_C27A28:U34G35_DD C 27 ? D 35 ? C 28 ? D 34 ? 1 C A 14 1_555 D U 4 1_555 C C 15 1_555 D G 3 1_555 0.297 -1.107 3.328 2.673 1.704 31.611 -2.338 -0.047 3.279 3.119 -4.892 31.766 23 CC_A28C29:G33U34_DD C 28 ? D 34 ? C 29 ? D 33 ? 1 C C 15 1_555 D G 3 1_555 C G 16 1_555 D C 2 1_555 0.145 -1.578 3.435 2.650 11.050 35.296 -3.944 0.121 2.834 17.668 -4.236 37.025 24 CC_C29G30:C32G33_DD C 29 ? D 33 ? C 30 ? D 32 ? 1 C G 16 1_555 D C 2 1_555 C A 17 1_555 D U 1 1_555 0.828 -1.608 3.133 3.267 5.165 31.529 -3.773 -0.951 2.909 9.394 -5.942 32.101 25 CC_G30A31:U31C32_DD C 30 ? D 32 ? C 31 ? D 31 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 6 'SULFATE ION' SO4 7 'COBALT HEXAMMINE(III)' NCO 8 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZFR _pdbx_initial_refinement_model.details 'PDB ENTRY 1ZFR' #