data_2P7V # _entry.id 2P7V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2P7V RCSB RCSB042076 WWPDB D_1000042076 # _pdbx_database_status.entry_id 2P7V _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-03-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Patikoglou, G.A.' 1 'Westblade, L.F.' 2 'Campbell, E.A.' 3 'Lamour, V.' 4 'Lane, W.J.' 5 'Darst, S.A.' 6 # _citation.id primary _citation.title 'Crystal structure of the Escherichia coli regulator of sigma70, Rsd, in complex with sigma70 domain 4.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 372 _citation.page_first 649 _citation.page_last 659 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17681541 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.06.081 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Patikoglou, G.A.' 1 primary 'Westblade, L.F.' 2 primary 'Campbell, E.A.' 3 primary 'Lamour, V.' 4 primary 'Lane, W.J.' 5 primary 'Darst, S.A.' 6 # _cell.entry_id 2P7V _cell.length_a 84.111 _cell.length_b 84.111 _cell.length_c 84.219 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2P7V _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Regulator of sigma D' 18266.834 1 ? ? ? ? 2 polymer man 'RNA polymerase sigma factor rpoD' 7977.170 1 ? ? 'domain 4' ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 94 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name Sigma-70 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA ; ;MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA ; A ? 2 'polypeptide(L)' no no DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 ASN n 1 4 GLN n 1 5 LEU n 1 6 ASP n 1 7 ASN n 1 8 LEU n 1 9 THR n 1 10 GLU n 1 11 ARG n 1 12 VAL n 1 13 ARG n 1 14 GLY n 1 15 SER n 1 16 ASN n 1 17 LYS n 1 18 LEU n 1 19 VAL n 1 20 ASP n 1 21 ARG n 1 22 TRP n 1 23 LEU n 1 24 HIS n 1 25 VAL n 1 26 ARG n 1 27 LYS n 1 28 HIS n 1 29 LEU n 1 30 LEU n 1 31 VAL n 1 32 ALA n 1 33 TYR n 1 34 TYR n 1 35 ASN n 1 36 LEU n 1 37 VAL n 1 38 GLY n 1 39 ILE n 1 40 LYS n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 GLU n 1 45 SER n 1 46 TYR n 1 47 MET n 1 48 ARG n 1 49 LEU n 1 50 ASN n 1 51 GLU n 1 52 LYS n 1 53 ALA n 1 54 LEU n 1 55 ASP n 1 56 ASP n 1 57 PHE n 1 58 CYS n 1 59 GLN n 1 60 SER n 1 61 LEU n 1 62 VAL n 1 63 ASP n 1 64 TYR n 1 65 LEU n 1 66 SER n 1 67 ALA n 1 68 GLY n 1 69 HIS n 1 70 PHE n 1 71 SER n 1 72 ILE n 1 73 TYR n 1 74 GLU n 1 75 ARG n 1 76 ILE n 1 77 LEU n 1 78 HIS n 1 79 LYS n 1 80 LEU n 1 81 GLU n 1 82 GLY n 1 83 ASN n 1 84 GLY n 1 85 GLN n 1 86 LEU n 1 87 ALA n 1 88 ARG n 1 89 ALA n 1 90 ALA n 1 91 LYS n 1 92 ILE n 1 93 TRP n 1 94 PRO n 1 95 GLN n 1 96 LEU n 1 97 GLU n 1 98 ALA n 1 99 ASN n 1 100 THR n 1 101 GLN n 1 102 GLN n 1 103 ILE n 1 104 MET n 1 105 ASP n 1 106 TYR n 1 107 TYR n 1 108 ASP n 1 109 SER n 1 110 SER n 1 111 LEU n 1 112 GLU n 1 113 THR n 1 114 ALA n 1 115 ILE n 1 116 ASP n 1 117 HIS n 1 118 ASP n 1 119 ASN n 1 120 TYR n 1 121 LEU n 1 122 GLU n 1 123 PHE n 1 124 GLN n 1 125 GLN n 1 126 VAL n 1 127 LEU n 1 128 SER n 1 129 ASP n 1 130 ILE n 1 131 GLY n 1 132 GLU n 1 133 ALA n 1 134 LEU n 1 135 GLU n 1 136 ALA n 1 137 ARG n 1 138 PHE n 1 139 VAL n 1 140 LEU n 1 141 GLU n 1 142 ASP n 1 143 LYS n 1 144 LEU n 1 145 ILE n 1 146 LEU n 1 147 LEU n 1 148 VAL n 1 149 LEU n 1 150 ASP n 1 151 ALA n 1 152 ALA n 1 153 ARG n 1 154 VAL n 1 155 LYS n 1 156 HIS n 1 157 PRO n 1 158 ALA n 2 1 ASP n 2 2 VAL n 2 3 LEU n 2 4 ALA n 2 5 GLY n 2 6 LEU n 2 7 THR n 2 8 ALA n 2 9 ARG n 2 10 GLU n 2 11 ALA n 2 12 LYS n 2 13 VAL n 2 14 LEU n 2 15 ARG n 2 16 MET n 2 17 ARG n 2 18 PHE n 2 19 GLY n 2 20 ILE n 2 21 ASP n 2 22 MET n 2 23 ASN n 2 24 THR n 2 25 ASP n 2 26 TYR n 2 27 THR n 2 28 LEU n 2 29 GLU n 2 30 GLU n 2 31 VAL n 2 32 GLY n 2 33 LYS n 2 34 GLN n 2 35 PHE n 2 36 ASP n 2 37 VAL n 2 38 THR n 2 39 ARG n 2 40 GLU n 2 41 ARG n 2 42 ILE n 2 43 ARG n 2 44 GLN n 2 45 ILE n 2 46 GLU n 2 47 ALA n 2 48 LYS n 2 49 ALA n 2 50 LEU n 2 51 ARG n 2 52 LYS n 2 53 LEU n 2 54 ARG n 2 55 HIS n 2 56 PRO n 2 57 SER n 2 58 ARG n 2 59 SER n 2 60 GLU n 2 61 VAL n 2 62 LEU n 2 63 ARG n 2 64 SER n 2 65 PHE n 2 66 LEU n 2 67 ASP n 2 68 ASP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Escherichia rsd ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? Escherichia 'rpoD, alt' ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RSD_ECOLI P0AFX4 1 ;MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL EGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA ; 1 ? 2 UNP RPOD_ECOLI P00579 2 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD 546 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2P7V A 1 ? 158 ? P0AFX4 1 ? 158 ? 1 158 2 2 2P7V B 1 ? 68 ? P00579 546 ? 613 ? 546 613 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 2 _exptl.entry_id 2P7V _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 62.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2 M KCl, 0.05 M MgCl2, 0.05 M Tris-HCl, pH 7.5, and 10% PEG4000, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 ? ? 1 2 ? ? 1 1,2 ? ? 1 # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' ? M x-ray 2 2 MAD ? M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.1 1.0 2 0.9793 1.0 3 0.9641 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'NSLS BEAMLINE X29A' ? 1.1 NSLS X29A 2 SYNCHROTRON 'APS BEAMLINE 31-ID' ? '0.9793, 0.9641' APS 31-ID # _reflns.entry_id 2P7V _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 50 _reflns.number_all 10405 _reflns.number_obs 10405 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _refine.entry_id 2P7V _refine.ls_d_res_high 2.600 _refine.ls_d_res_low 50.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.1 _refine.ls_number_reflns_obs 10405 _refine.ls_R_factor_R_work 0.239 _refine.ls_R_factor_R_free 0.273 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 513 _refine.B_iso_mean 42.907 _refine.solvent_model_param_bsol 29.183 _refine.aniso_B[1][1] 0.158 _refine.aniso_B[2][2] 0.158 _refine.aniso_B[3][3] -0.315 _refine.aniso_B[1][2] -8.887 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 10405 _refine.ls_R_factor_all 0.24 _refine.ls_R_factor_obs 0.24 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1770 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1865 _refine_hist.d_res_high 2.600 _refine_hist.d_res_low 50.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.008 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.328 ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2P7V _struct.title 'Crystal structure of the Escherichia coli regulator of sigma 70, Rsd, in complex with sigma 70 domain 4' _struct.pdbx_descriptor 'Regulator of sigma D, RNA polymerase sigma factor rpoD' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2P7V _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;Rsd, sigma 70, Regulator of sigma 70, sigma 70 domain 4, transcription, regulation, Helix-turn-helix, Rsd-sigma 70 complex, sigma factor, Escherichia coli Rsd-sigma 70 complex, E. coli Rsd-sigma 70 complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly consists of one Rsd - sigma 70 domain 4 protein-protein complex.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MET A 1 ? ARG A 13 ? MET A 1 ARG A 13 1 ? 13 HELX_P HELX_P2 2 ASN A 16 ? GLY A 38 ? ASN A 16 GLY A 38 1 ? 23 HELX_P HELX_P3 3 GLU A 51 ? SER A 71 ? GLU A 51 SER A 71 1 ? 21 HELX_P HELX_P4 4 SER A 71 ? HIS A 78 ? SER A 71 HIS A 78 1 ? 8 HELX_P HELX_P5 5 GLY A 82 ? HIS A 117 ? GLY A 82 HIS A 117 1 ? 36 HELX_P HELX_P6 6 ASN A 119 ? LYS A 155 ? ASN A 119 LYS A 155 1 ? 37 HELX_P HELX_P7 7 THR B 7 ? PHE B 18 ? THR B 552 PHE B 563 1 ? 12 HELX_P HELX_P8 8 THR B 27 ? ASP B 36 ? THR B 572 ASP B 581 1 ? 10 HELX_P HELX_P9 9 THR B 38 ? LYS B 52 ? THR B 583 LYS B 597 1 ? 15 HELX_P HELX_P10 10 LEU B 53 ? HIS B 55 ? LEU B 598 HIS B 600 5 ? 3 HELX_P HELX_P11 11 SER B 57 ? ARG B 63 ? SER B 602 ARG B 608 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? B GLU 60 O ? ? ? 1_555 C MG . MG ? ? B GLU 605 B MG 101 1_555 ? ? ? ? ? ? ? 2.432 ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 101 B HOH 1 1_555 ? ? ? ? ? ? ? 1.890 ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 B ARG 63 O ? ? B MG 101 B ARG 608 1_555 ? ? ? ? ? ? ? 2.638 ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 101 B HOH 1 4_665 ? ? ? ? ? ? ? 1.873 ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 B GLU 60 O ? ? B MG 101 B GLU 605 4_665 ? ? ? ? ? ? ? 2.432 ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 B ARG 63 O ? ? B MG 101 B ARG 608 4_665 ? ? ? ? ? ? ? 2.637 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 156 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 156 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 157 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 157 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.69 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH E . ? HOH B 1 . ? 4_665 ? 2 AC1 6 HOH E . ? HOH B 1 . ? 1_555 ? 3 AC1 6 GLU B 60 ? GLU B 605 . ? 1_555 ? 4 AC1 6 GLU B 60 ? GLU B 605 . ? 4_665 ? 5 AC1 6 ARG B 63 ? ARG B 608 . ? 4_665 ? 6 AC1 6 ARG B 63 ? ARG B 608 . ? 1_555 ? # _atom_sites.entry_id 2P7V _atom_sites.fract_transf_matrix[1][1] 0.011889 _atom_sites.fract_transf_matrix[1][2] 0.006864 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013728 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011874 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 TRP 22 22 22 TRP TRP A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 HIS 24 24 24 HIS HIS A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LYS 43 43 ? ? ? A . n A 1 44 GLU 44 44 ? ? ? A . n A 1 45 SER 45 45 ? ? ? A . n A 1 46 TYR 46 46 ? ? ? A . n A 1 47 MET 47 47 ? ? ? A . n A 1 48 ARG 48 48 ? ? ? A . n A 1 49 LEU 49 49 ? ? ? A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 TRP 93 93 93 TRP TRP A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 MET 104 104 104 MET MET A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 GLN 125 125 125 GLN GLN A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 HIS 156 156 156 HIS HIS A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 ALA 158 158 158 ALA ALA A . n B 2 1 ASP 1 546 546 ASP ASP B . n B 2 2 VAL 2 547 547 VAL VAL B . n B 2 3 LEU 3 548 548 LEU LEU B . n B 2 4 ALA 4 549 549 ALA ALA B . n B 2 5 GLY 5 550 550 GLY GLY B . n B 2 6 LEU 6 551 551 LEU LEU B . n B 2 7 THR 7 552 552 THR THR B . n B 2 8 ALA 8 553 553 ALA ALA B . n B 2 9 ARG 9 554 554 ARG ARG B . n B 2 10 GLU 10 555 555 GLU GLU B . n B 2 11 ALA 11 556 556 ALA ALA B . n B 2 12 LYS 12 557 557 LYS LYS B . n B 2 13 VAL 13 558 558 VAL VAL B . n B 2 14 LEU 14 559 559 LEU LEU B . n B 2 15 ARG 15 560 560 ARG ARG B . n B 2 16 MET 16 561 561 MET MET B . n B 2 17 ARG 17 562 562 ARG ARG B . n B 2 18 PHE 18 563 563 PHE PHE B . n B 2 19 GLY 19 564 564 GLY GLY B . n B 2 20 ILE 20 565 565 ILE ILE B . n B 2 21 ASP 21 566 566 ASP ASP B . n B 2 22 MET 22 567 567 MET MET B . n B 2 23 ASN 23 568 568 ASN ASN B . n B 2 24 THR 24 569 569 THR THR B . n B 2 25 ASP 25 570 570 ASP ASP B . n B 2 26 TYR 26 571 571 TYR TYR B . n B 2 27 THR 27 572 572 THR THR B . n B 2 28 LEU 28 573 573 LEU LEU B . n B 2 29 GLU 29 574 574 GLU GLU B . n B 2 30 GLU 30 575 575 GLU GLU B . n B 2 31 VAL 31 576 576 VAL VAL B . n B 2 32 GLY 32 577 577 GLY GLY B . n B 2 33 LYS 33 578 578 LYS LYS B . n B 2 34 GLN 34 579 579 GLN GLN B . n B 2 35 PHE 35 580 580 PHE PHE B . n B 2 36 ASP 36 581 581 ASP ASP B . n B 2 37 VAL 37 582 582 VAL VAL B . n B 2 38 THR 38 583 583 THR THR B . n B 2 39 ARG 39 584 584 ARG ARG B . n B 2 40 GLU 40 585 585 GLU GLU B . n B 2 41 ARG 41 586 586 ARG ARG B . n B 2 42 ILE 42 587 587 ILE ILE B . n B 2 43 ARG 43 588 588 ARG ARG B . n B 2 44 GLN 44 589 589 GLN GLN B . n B 2 45 ILE 45 590 590 ILE ILE B . n B 2 46 GLU 46 591 591 GLU GLU B . n B 2 47 ALA 47 592 592 ALA ALA B . n B 2 48 LYS 48 593 593 LYS LYS B . n B 2 49 ALA 49 594 594 ALA ALA B . n B 2 50 LEU 50 595 595 LEU LEU B . n B 2 51 ARG 51 596 596 ARG ARG B . n B 2 52 LYS 52 597 597 LYS LYS B . n B 2 53 LEU 53 598 598 LEU LEU B . n B 2 54 ARG 54 599 599 ARG ARG B . n B 2 55 HIS 55 600 600 HIS HIS B . n B 2 56 PRO 56 601 601 PRO PRO B . n B 2 57 SER 57 602 602 SER SER B . n B 2 58 ARG 58 603 603 ARG ARG B . n B 2 59 SER 59 604 604 SER SER B . n B 2 60 GLU 60 605 605 GLU GLU B . n B 2 61 VAL 61 606 606 VAL VAL B . n B 2 62 LEU 62 607 607 LEU LEU B . n B 2 63 ARG 63 608 608 ARG ARG B . n B 2 64 SER 64 609 609 SER SER B . n B 2 65 PHE 65 610 610 PHE PHE B . n B 2 66 LEU 66 611 611 LEU LEU B . n B 2 67 ASP 67 612 612 ASP ASP B . n B 2 68 ASP 68 613 613 ASP ASP B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 101 101 MG MG B . D 4 HOH 1 159 159 HOH HOH A . D 4 HOH 2 160 160 HOH HOH A . D 4 HOH 3 161 161 HOH HOH A . D 4 HOH 4 162 162 HOH HOH A . D 4 HOH 5 163 163 HOH HOH A . D 4 HOH 6 164 164 HOH HOH A . D 4 HOH 7 165 165 HOH HOH A . D 4 HOH 8 166 166 HOH HOH A . D 4 HOH 9 167 167 HOH HOH A . D 4 HOH 10 168 168 HOH HOH A . D 4 HOH 11 169 169 HOH HOH A . D 4 HOH 12 170 170 HOH HOH A . D 4 HOH 13 171 171 HOH HOH A . D 4 HOH 14 172 172 HOH HOH A . D 4 HOH 15 173 173 HOH HOH A . D 4 HOH 16 174 174 HOH HOH A . D 4 HOH 17 175 175 HOH HOH A . D 4 HOH 18 176 176 HOH HOH A . D 4 HOH 19 177 177 HOH HOH A . D 4 HOH 20 178 178 HOH HOH A . D 4 HOH 21 179 179 HOH HOH A . D 4 HOH 22 180 180 HOH HOH A . D 4 HOH 23 181 181 HOH HOH A . D 4 HOH 24 182 182 HOH HOH A . D 4 HOH 25 183 183 HOH HOH A . D 4 HOH 26 184 184 HOH HOH A . D 4 HOH 27 185 185 HOH HOH A . D 4 HOH 28 186 186 HOH HOH A . D 4 HOH 29 187 187 HOH HOH A . D 4 HOH 30 188 188 HOH HOH A . D 4 HOH 31 189 189 HOH HOH A . D 4 HOH 32 190 190 HOH HOH A . D 4 HOH 33 191 191 HOH HOH A . D 4 HOH 34 192 192 HOH HOH A . D 4 HOH 35 193 193 HOH HOH A . D 4 HOH 36 194 194 HOH HOH A . D 4 HOH 37 195 195 HOH HOH A . D 4 HOH 38 196 196 HOH HOH A . D 4 HOH 39 197 197 HOH HOH A . D 4 HOH 40 198 198 HOH HOH A . D 4 HOH 41 199 199 HOH HOH A . D 4 HOH 42 200 200 HOH HOH A . D 4 HOH 43 201 201 HOH HOH A . D 4 HOH 44 202 202 HOH HOH A . D 4 HOH 45 203 203 HOH HOH A . D 4 HOH 46 204 204 HOH HOH A . D 4 HOH 47 205 205 HOH HOH A . D 4 HOH 48 206 206 HOH HOH A . D 4 HOH 49 207 207 HOH HOH A . D 4 HOH 50 208 208 HOH HOH A . D 4 HOH 51 209 209 HOH HOH A . D 4 HOH 52 210 210 HOH HOH A . E 4 HOH 1 1 1 HOH HOH B . E 4 HOH 2 2 2 HOH HOH B . E 4 HOH 3 3 3 HOH HOH B . E 4 HOH 4 4 4 HOH HOH B . E 4 HOH 5 5 5 HOH HOH B . E 4 HOH 6 6 6 HOH HOH B . E 4 HOH 7 7 7 HOH HOH B . E 4 HOH 8 8 8 HOH HOH B . E 4 HOH 9 13 13 HOH HOH B . E 4 HOH 10 14 14 HOH HOH B . E 4 HOH 11 15 15 HOH HOH B . E 4 HOH 12 19 19 HOH HOH B . E 4 HOH 13 20 20 HOH HOH B . E 4 HOH 14 21 21 HOH HOH B . E 4 HOH 15 23 23 HOH HOH B . E 4 HOH 16 26 26 HOH HOH B . E 4 HOH 17 30 30 HOH HOH B . E 4 HOH 18 32 32 HOH HOH B . E 4 HOH 19 35 35 HOH HOH B . E 4 HOH 20 42 42 HOH HOH B . E 4 HOH 21 43 43 HOH HOH B . E 4 HOH 22 46 46 HOH HOH B . E 4 HOH 23 49 49 HOH HOH B . E 4 HOH 24 51 51 HOH HOH B . E 4 HOH 25 54 54 HOH HOH B . E 4 HOH 26 56 56 HOH HOH B . E 4 HOH 27 57 57 HOH HOH B . E 4 HOH 28 62 62 HOH HOH B . E 4 HOH 29 64 64 HOH HOH B . E 4 HOH 30 65 65 HOH HOH B . E 4 HOH 31 66 66 HOH HOH B . E 4 HOH 32 67 67 HOH HOH B . E 4 HOH 33 68 68 HOH HOH B . E 4 HOH 34 71 71 HOH HOH B . E 4 HOH 35 73 73 HOH HOH B . E 4 HOH 36 77 77 HOH HOH B . E 4 HOH 37 79 79 HOH HOH B . E 4 HOH 38 81 81 HOH HOH B . E 4 HOH 39 86 86 HOH HOH B . E 4 HOH 40 89 89 HOH HOH B . E 4 HOH 41 95 95 HOH HOH B . E 4 HOH 42 96 96 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 2 1,2 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 6610 ? 2 MORE -32 ? 2 'SSA (A^2)' 21680 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 42.0555000000 0.0000000000 -1.0000000000 0.0000000000 72.8422627377 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B MG 101 ? C MG . 2 1 A HOH 169 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B GLU 60 ? B GLU 605 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? E HOH . ? B HOH 1 ? 1_555 86.4 ? 2 O ? B GLU 60 ? B GLU 605 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B ARG 63 ? B ARG 608 ? 1_555 89.0 ? 3 O ? E HOH . ? B HOH 1 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B ARG 63 ? B ARG 608 ? 1_555 93.4 ? 4 O ? B GLU 60 ? B GLU 605 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? E HOH . ? B HOH 1 ? 4_665 85.6 ? 5 O ? E HOH . ? B HOH 1 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? E HOH . ? B HOH 1 ? 4_665 168.5 ? 6 O ? B ARG 63 ? B ARG 608 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? E HOH . ? B HOH 1 ? 4_665 94.8 ? 7 O ? B GLU 60 ? B GLU 605 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B GLU 60 ? B GLU 605 ? 4_665 92.0 ? 8 O ? E HOH . ? B HOH 1 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B GLU 60 ? B GLU 605 ? 4_665 85.2 ? 9 O ? B ARG 63 ? B ARG 608 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B GLU 60 ? B GLU 605 ? 4_665 178.2 ? 10 O ? E HOH . ? B HOH 1 ? 4_665 MG ? C MG . ? B MG 101 ? 1_555 O ? B GLU 60 ? B GLU 605 ? 4_665 86.8 ? 11 O ? B GLU 60 ? B GLU 605 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B ARG 63 ? B ARG 608 ? 4_665 178.7 ? 12 O ? E HOH . ? B HOH 1 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B ARG 63 ? B ARG 608 ? 4_665 94.4 ? 13 O ? B ARG 63 ? B ARG 608 ? 1_555 MG ? C MG . ? B MG 101 ? 1_555 O ? B ARG 63 ? B ARG 608 ? 4_665 90.0 ? 14 O ? E HOH . ? B HOH 1 ? 4_665 MG ? C MG . ? B MG 101 ? 1_555 O ? B ARG 63 ? B ARG 608 ? 4_665 93.8 ? 15 O ? B GLU 60 ? B GLU 605 ? 4_665 MG ? C MG . ? B MG 101 ? 1_555 O ? B ARG 63 ? B ARG 608 ? 4_665 89.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-21 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 SHARP . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE1 A GLU 10 ? ? NH2 A ARG 13 ? ? 1.81 2 1 O A TYR 120 ? ? O A HOH 180 ? ? 2.07 3 1 O B ASP 613 ? ? O B HOH 65 ? ? 2.07 4 1 N B VAL 547 ? ? O B HOH 95 ? ? 2.09 5 1 NH1 A ARG 75 ? ? O A HOH 165 ? ? 2.09 6 1 ND1 A HIS 24 ? ? O A HOH 177 ? ? 2.11 7 1 NH1 A ARG 75 ? ? O A HOH 161 ? ? 2.11 8 1 OE1 B GLN 579 ? ? O B HOH 13 ? ? 2.12 9 1 NH2 B ARG 554 ? ? O B HOH 96 ? ? 2.13 10 1 O B VAL 606 ? ? O B HOH 62 ? ? 2.16 11 1 O A ARG 11 ? ? O A HOH 202 ? ? 2.17 12 1 CA A LEU 2 ? ? O A HOH 203 ? ? 2.19 13 1 O A GLU 132 ? ? O A HOH 182 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 71 ? ? -135.37 -59.20 2 1 ASP A 108 ? ? -82.75 -83.76 3 1 SER A 109 ? ? -51.07 -89.65 4 1 ALA A 114 ? ? -76.11 29.88 5 1 ILE A 115 ? ? -134.60 -59.03 6 1 HIS A 117 ? ? -110.42 74.69 7 1 ASP A 118 ? ? -50.10 109.47 8 1 ASN A 119 ? ? -155.43 73.51 9 1 TYR A 120 ? ? -15.15 -35.90 10 1 ALA A 151 ? ? -23.45 -74.05 11 1 ALA A 152 ? ? -30.46 -72.04 12 1 SER B 602 ? ? -162.37 6.35 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 40 ? CG ? A LYS 40 CG 2 1 Y 1 A LYS 40 ? CD ? A LYS 40 CD 3 1 Y 1 A LYS 40 ? CE ? A LYS 40 CE 4 1 Y 1 A LYS 40 ? NZ ? A LYS 40 NZ 5 1 Y 1 A PRO 41 ? CG ? A PRO 41 CG 6 1 Y 1 A PRO 41 ? CD ? A PRO 41 CD 7 1 Y 1 A ASN 50 ? CG ? A ASN 50 CG 8 1 Y 1 A ASN 50 ? OD1 ? A ASN 50 OD1 9 1 Y 1 A ASN 50 ? ND2 ? A ASN 50 ND2 10 1 Y 1 A LYS 52 ? CG ? A LYS 52 CG 11 1 Y 1 A LYS 52 ? CD ? A LYS 52 CD 12 1 Y 1 A LYS 52 ? CE ? A LYS 52 CE 13 1 Y 1 A LYS 52 ? NZ ? A LYS 52 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 43 ? A LYS 43 2 1 Y 1 A GLU 44 ? A GLU 44 3 1 Y 1 A SER 45 ? A SER 45 4 1 Y 1 A TYR 46 ? A TYR 46 5 1 Y 1 A MET 47 ? A MET 47 6 1 Y 1 A ARG 48 ? A ARG 48 7 1 Y 1 A LEU 49 ? A LEU 49 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH #