HEADER LYASE 22-MAR-07 2P8G TITLE CRYSTAL STRUCTURE OF PHENOLIC ACID DECARBOXYLASE (2635953) FROM TITLE 2 BACILLUS SUBTILIS AT 1.36 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENOLIC ACID DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAD; COMPND 5 EC: 4.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: PADC, PAD, BSU34400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS 2635953, PHENOLIC ACID DECARBOXYLASE (PAD), STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 15-NOV-23 2P8G 1 REMARK REVDAT 7 20-SEP-23 2P8G 1 REMARK REVDAT 6 25-JAN-23 2P8G 1 SEQADV REVDAT 5 20-OCT-21 2P8G 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2P8G 1 REMARK REVDAT 3 13-JUL-11 2P8G 1 VERSN REVDAT 2 24-FEB-09 2P8G 1 VERSN REVDAT 1 17-APR-07 2P8G 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PHENOLIC ACID DECARBOXYLASE (2635953) JRNL TITL 2 FROM BACILLUS SUBTILIS AT 1.36 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 59375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3892 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.021 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1456 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1013 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1967 ; 1.489 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2451 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 173 ; 6.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;34.902 ;24.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;10.437 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 200 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1609 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 308 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 289 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1129 ; 0.210 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 746 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 779 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 868 ; 1.666 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 333 ; 0.353 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1352 ; 2.135 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 707 ; 3.713 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 609 ; 5.662 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6640 96.8450 92.1060 REMARK 3 T TENSOR REMARK 3 T11: -0.0285 T22: -0.0340 REMARK 3 T33: -0.0387 T12: 0.0064 REMARK 3 T13: 0.0025 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6993 L22: 0.2286 REMARK 3 L33: 0.2338 L12: -0.1819 REMARK 3 L13: 0.0446 L23: -0.2071 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.0256 S13: 0.0049 REMARK 3 S21: 0.0388 S22: 0.0081 S23: -0.0041 REMARK 3 S31: -0.0133 S32: 0.0066 S33: -0.0079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. EDO MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE REMARK 3 MODELED. REMARK 3 4. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2P8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1000042097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, ASYMMETRICALLY CUT SI(220) REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59580 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 58.722 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 18.20 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.01000 REMARK 200 R SYM FOR SHELL (I) : 1.03600 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CG9 REMARK 200 REMARK 200 REMARK: REMARK 200 THE STRUCTURE WAS SOLVED BY MOLECULAR REPLACEMENT USING PDB ENTRY REMARK 200 2GC9 REMARK 200 AS A TEMPLATE AGAINST A 1.6A DATASET FROM ANOTHER CRYSTAL. THE REMARK 200 STRUCTURE REMARK 200 WAS SUBSEQUENTLY REFINED AGAINST THIS DATASET AT 1.36A RESOLUTION. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NACL, 10.0% PEG 8000, REMARK 280 1.0M LICL, 20.0% PEG 6000, 0.1M NA,K PHOSPHATE PH 6.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.73750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.73750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.73750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.73750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 58.73750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 58.73750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 58.73750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 58.73750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 58.73750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 58.73750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 58.73750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 58.73750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 58.73750 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 88.10625 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 29.36875 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 29.36875 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 88.10625 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 88.10625 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 88.10625 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 29.36875 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 29.36875 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 88.10625 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 29.36875 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 88.10625 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 29.36875 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 88.10625 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 29.36875 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 29.36875 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 29.36875 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 88.10625 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 29.36875 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 88.10625 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 88.10625 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 88.10625 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 29.36875 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 29.36875 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 88.10625 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 88.10625 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 29.36875 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 29.36875 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 29.36875 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 29.36875 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 88.10625 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 29.36875 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 88.10625 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 29.36875 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 88.10625 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 88.10625 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 88.10625 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 EBI PISA ANALYSIS SUPPORTS THE ASSIGNMENT OF REMARK 300 A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 88.10625 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 205.58125 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 88.10625 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 27 18.73 -144.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 370637 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 THE RESIDUE LYS 146 HAS BEEN MUTATED TO TYR. DBREF 2P8G A 1 161 UNP O07006 PADC_BACSU 1 161 SEQADV 2P8G GLY A 0 UNP O07006 EXPRESSION TAG SEQADV 2P8G MSE A 1 UNP O07006 MET 1 MODIFIED RESIDUE SEQADV 2P8G MSE A 9 UNP O07006 MET 9 MODIFIED RESIDUE SEQADV 2P8G MSE A 37 UNP O07006 MET 37 MODIFIED RESIDUE SEQADV 2P8G MSE A 75 UNP O07006 MET 75 MODIFIED RESIDUE SEQADV 2P8G MSE A 81 UNP O07006 MET 81 MODIFIED RESIDUE SEQADV 2P8G MSE A 109 UNP O07006 MET 109 MODIFIED RESIDUE SEQADV 2P8G TYR A 146 UNP O07006 LYS 146 ENGINEERED MUTATION SEQADV 2P8G MSE A 152 UNP O07006 MET 152 MODIFIED RESIDUE SEQRES 1 A 162 GLY MSE GLU ASN PHE ILE GLY SER HIS MSE ILE TYR THR SEQRES 2 A 162 TYR GLU ASN GLY TRP GLU TYR GLU ILE TYR ILE LYS ASN SEQRES 3 A 162 ASP HIS THR ILE ASP TYR ARG ILE HIS SER GLY MSE VAL SEQRES 4 A 162 ALA GLY ARG TRP VAL ARG ASP GLN GLU VAL ASN ILE VAL SEQRES 5 A 162 LYS LEU THR GLU GLY VAL TYR LYS VAL SER TRP THR GLU SEQRES 6 A 162 PRO THR GLY THR ASP VAL SER LEU ASN PHE MSE PRO ASN SEQRES 7 A 162 GLU LYS ARG MSE HIS GLY ILE ILE PHE PHE PRO LYS TRP SEQRES 8 A 162 VAL HIS GLU HIS PRO GLU ILE THR VAL CYS TYR GLN ASN SEQRES 9 A 162 ASP HIS ILE ASP LEU MSE LYS GLU SER ARG GLU LYS TYR SEQRES 10 A 162 GLU THR TYR PRO LYS TYR VAL VAL PRO GLU PHE ALA GLU SEQRES 11 A 162 ILE THR PHE LEU LYS ASN GLU GLY VAL ASP ASN GLU GLU SEQRES 12 A 162 VAL ILE SER TYR ALA PRO TYR GLU GLY MSE THR ASP ASP SEQRES 13 A 162 ILE ARG ALA GLY ARG LEU MODRES 2P8G MSE A 1 MET SELENOMETHIONINE MODRES 2P8G MSE A 9 MET SELENOMETHIONINE MODRES 2P8G MSE A 37 MET SELENOMETHIONINE MODRES 2P8G MSE A 75 MET SELENOMETHIONINE MODRES 2P8G MSE A 81 MET SELENOMETHIONINE MODRES 2P8G MSE A 109 MET SELENOMETHIONINE MODRES 2P8G MSE A 152 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 9 8 HET MSE A 37 8 HET MSE A 75 8 HET MSE A 81 8 HET MSE A 109 8 HET MSE A 152 8 HET EDO A 162 4 HET EDO A 163 4 HET EDO A 164 4 HET EDO A 165 4 HET EDO A 166 4 HET EDO A 167 4 HET EDO A 168 4 HET EDO A 169 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 EDO 8(C2 H6 O2) FORMUL 10 HOH *254(H2 O) HELIX 1 1 GLY A 0 ILE A 5 1 6 HELIX 2 2 PRO A 76 GLU A 78 5 3 HELIX 3 3 PRO A 88 HIS A 94 1 7 HELIX 4 4 PRO A 95 VAL A 99 5 5 HELIX 5 5 TYR A 101 ASP A 104 5 4 HELIX 6 6 HIS A 105 TYR A 116 1 12 HELIX 7 7 GLY A 151 GLY A 159 1 9 SHEET 1 A 9 TRP A 42 GLU A 47 0 SHEET 2 A 9 THR A 28 ILE A 33 -1 N TYR A 31 O VAL A 43 SHEET 3 A 9 GLU A 18 ASN A 25 -1 N TYR A 22 O ASP A 30 SHEET 4 A 9 SER A 7 THR A 12 -1 N SER A 7 O ILE A 23 SHEET 5 A 9 TYR A 122 ASN A 135 -1 O GLU A 129 N THR A 12 SHEET 6 A 9 ARG A 80 PHE A 87 -1 N PHE A 87 O TYR A 122 SHEET 7 A 9 ASP A 69 MSE A 75 -1 N ASN A 73 O HIS A 82 SHEET 8 A 9 VAL A 57 THR A 63 -1 N VAL A 60 O LEU A 72 SHEET 9 A 9 ASN A 49 THR A 54 -1 N ASN A 49 O SER A 61 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C HIS A 8 N MSE A 9 1555 1555 1.34 LINK C MSE A 9 N ILE A 10 1555 1555 1.33 LINK C GLY A 36 N MSE A 37 1555 1555 1.32 LINK C MSE A 37 N VAL A 38 1555 1555 1.33 LINK C PHE A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N PRO A 76 1555 1555 1.33 LINK C ARG A 80 N MSE A 81 1555 1555 1.32 LINK C MSE A 81 N HIS A 82 1555 1555 1.33 LINK C LEU A 108 N MSE A 109 1555 1555 1.32 LINK C MSE A 109 N LYS A 110 1555 1555 1.33 LINK C GLY A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N THR A 153 1555 1555 1.34 CISPEP 1 TYR A 119 PRO A 120 0 -4.18 SITE 1 AC1 9 HIS A 8 ARG A 32 GLU A 142 VAL A 143 SITE 2 AC1 9 MSE A 152 HOH A 216 HOH A 380 HOH A 391 SITE 3 AC1 9 HOH A 395 SITE 1 AC2 8 GLY A 0 ASN A 3 GLY A 56 TYR A 58 SITE 2 AC2 8 PRO A 76 ASN A 77 HOH A 273 HOH A 402 SITE 1 AC3 2 PRO A 76 HOH A 331 SITE 1 AC4 6 TYR A 31 VAL A 38 GLU A 64 ILE A 85 SITE 2 AC4 6 EDO A 166 HOH A 188 SITE 1 AC5 4 TYR A 11 TYR A 31 EDO A 165 HOH A 185 SITE 1 AC6 4 LYS A 79 GLU A 129 ILE A 130 HOH A 411 SITE 1 AC7 3 LEU A 161 HOH A 232 HOH A 364 SITE 1 AC8 4 LYS A 52 ARG A 80 HOH A 180 HOH A 335 CRYST1 117.475 117.475 117.475 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008510 0.00000