HEADER OXIDOREDUCTASE 25-MAR-07 2P9G TITLE CRYSTAL STRUCTURE OF SERINE BOUND G336V,G337V DOUBLE MUTANT OF E.COLI TITLE 2 PHOSPHOGLYCERATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PGDH; COMPND 5 EC: 1.1.1.95; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: SERA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99 KEYWDS OXIDOREDUCTASE, SERINE BIOSYNTHESIS, D-3-PHOSPHOGLYCERATE KEYWDS 2 DEHYDROGENASE, DOUBLE MUTATION EXPDTA X-RAY DIFFRACTION AUTHOR S.DEY,J.C.SACCHETTINI REVDAT 6 30-AUG-23 2P9G 1 REMARK REVDAT 5 20-OCT-21 2P9G 1 REMARK SEQADV REVDAT 4 13-JUL-11 2P9G 1 VERSN REVDAT 3 24-FEB-09 2P9G 1 VERSN REVDAT 2 17-JUL-07 2P9G 1 JRNL REVDAT 1 24-APR-07 2P9G 0 JRNL AUTH S.DEY,Z.HU,X.L.XU,J.C.SACCHETTINI,G.A.GRANT JRNL TITL THE EFFECT OF HINGE MUTATIONS ON EFFECTOR BINDING AND DOMAIN JRNL TITL 2 ROTATION IN ESCHERICHIA COLI D-3-PHOSPHOGLYCERATE JRNL TITL 3 DEHYDROGENASE. JRNL REF J.BIOL.CHEM. V. 282 18418 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17459882 JRNL DOI 10.1074/JBC.M701174200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1285 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1732 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.14000 REMARK 3 B22 (A**2) : -3.00000 REMARK 3 B33 (A**2) : 6.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.366 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.366 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6344 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8618 ; 1.869 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 806 ; 6.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;36.971 ;24.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1072 ;18.899 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;23.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1008 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4710 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2887 ; 0.274 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4346 ; 0.344 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 406 ; 0.216 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 126 ; 0.187 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.261 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4096 ; 4.074 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6440 ; 6.244 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2434 ; 8.101 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2P9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25289 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.20700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M ACETATE, 0.2M REMARK 280 CALCIUM ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 72.03600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.11950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.03600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.11950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 19500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 144.07200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 4 REMARK 465 SER B 5 REMARK 465 LEU B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 377 N GLY A 377 CA 0.090 REMARK 500 LYS B 218 CD LYS B 218 CE 0.179 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 378 CG - CD2 - CE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 TYR A 378 CZ - CE2 - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG B 338 CB - CA - C ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 10.95 59.25 REMARK 500 ASP A 44 1.10 -44.33 REMARK 500 GLU A 45 -38.28 -151.97 REMARK 500 LEU A 47 -74.62 -42.02 REMARK 500 ARG A 60 -144.83 -123.19 REMARK 500 TYR A 159 52.83 -100.67 REMARK 500 ASN A 214 164.75 172.09 REMARK 500 SER A 239 -95.07 -90.84 REMARK 500 ASN A 286 30.44 -94.13 REMARK 500 SER A 296 73.31 -102.64 REMARK 500 SER A 323 -4.31 88.50 REMARK 500 HIS A 335 22.89 -149.84 REMARK 500 VAL A 336 131.70 167.91 REMARK 500 ARG A 338 113.51 79.00 REMARK 500 GLU A 360 10.43 -65.11 REMARK 500 GLN A 361 24.40 -146.18 REMARK 500 LYS B 8 100.30 10.43 REMARK 500 ASP B 9 42.28 -56.95 REMARK 500 ARG B 60 -135.72 -119.17 REMARK 500 ALA B 83 145.96 174.62 REMARK 500 ASN B 108 49.58 -140.67 REMARK 500 SER B 172 12.51 -65.69 REMARK 500 PRO B 215 -38.23 -31.95 REMARK 500 SER B 233 -169.92 -72.17 REMARK 500 SER B 239 -77.40 -99.31 REMARK 500 ASP B 245 97.23 -62.81 REMARK 500 LYS B 256 16.13 56.96 REMARK 500 HIS B 292 65.77 63.57 REMARK 500 SER B 323 5.29 82.63 REMARK 500 HIS B 335 -62.35 -128.81 REMARK 500 VAL B 337 118.92 -13.07 REMARK 500 GLU B 360 1.88 -64.48 REMARK 500 ALA B 374 -87.45 -2.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SER A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SER A 551 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2P9C RELATED DB: PDB REMARK 900 SERINE BOUND G336V SINGLE MUTANT OF D-3- PHOSPHOGLYCERATE REMARK 900 DEHYDROGENASE REMARK 900 RELATED ID: 2P9E RELATED DB: PDB REMARK 900 G336V MUTANT OF D-3-PHOSPHOGLYCERATE DEHYDROGENASE REMARK 900 RELATED ID: 1YBA RELATED DB: PDB REMARK 900 D-3 PHOSPHOGLYCERATE DEHYDROGENASE REMARK 900 RELATED ID: 1PSD RELATED DB: PDB REMARK 900 SERINE BOUND D-3 PHOSPHOGLYCERATE DEHYDROGENASE DBREF 2P9G A 1 410 UNP P0A9T0 SERA_ECOLI 1 410 DBREF 2P9G B 1 410 UNP P0A9T0 SERA_ECOLI 1 410 SEQADV 2P9G ALA A 81 UNP P0A9T0 CYS 81 ENGINEERED MUTATION SEQADV 2P9G ALA A 83 UNP P0A9T0 CYS 83 ENGINEERED MUTATION SEQADV 2P9G ALA A 250 UNP P0A9T0 CYS 250 ENGINEERED MUTATION SEQADV 2P9G ALA A 282 UNP P0A9T0 CYS 282 ENGINEERED MUTATION SEQADV 2P9G VAL A 336 UNP P0A9T0 GLY 336 ENGINEERED MUTATION SEQADV 2P9G VAL A 337 UNP P0A9T0 GLY 337 ENGINEERED MUTATION SEQADV 2P9G ALA B 81 UNP P0A9T0 CYS 81 ENGINEERED MUTATION SEQADV 2P9G ALA B 83 UNP P0A9T0 CYS 83 ENGINEERED MUTATION SEQADV 2P9G ALA B 250 UNP P0A9T0 CYS 250 ENGINEERED MUTATION SEQADV 2P9G ALA B 282 UNP P0A9T0 CYS 282 ENGINEERED MUTATION SEQADV 2P9G VAL B 336 UNP P0A9T0 GLY 336 ENGINEERED MUTATION SEQADV 2P9G VAL B 337 UNP P0A9T0 GLY 337 ENGINEERED MUTATION SEQRES 1 A 410 MET ALA LYS VAL SER LEU GLU LYS ASP LYS ILE LYS PHE SEQRES 2 A 410 LEU LEU VAL GLU GLY VAL HIS GLN LYS ALA LEU GLU SER SEQRES 3 A 410 LEU ARG ALA ALA GLY TYR THR ASN ILE GLU PHE HIS LYS SEQRES 4 A 410 GLY ALA LEU ASP ASP GLU GLN LEU LYS GLU SER ILE ARG SEQRES 5 A 410 ASP ALA HIS PHE ILE GLY LEU ARG SER ARG THR HIS LEU SEQRES 6 A 410 THR GLU ASP VAL ILE ASN ALA ALA GLU LYS LEU VAL ALA SEQRES 7 A 410 ILE GLY ALA PHE ALA ILE GLY THR ASN GLN VAL ASP LEU SEQRES 8 A 410 ASP ALA ALA ALA LYS ARG GLY ILE PRO VAL PHE ASN ALA SEQRES 9 A 410 PRO PHE SER ASN THR ARG SER VAL ALA GLU LEU VAL ILE SEQRES 10 A 410 GLY GLU LEU LEU LEU LEU LEU ARG GLY VAL PRO GLU ALA SEQRES 11 A 410 ASN ALA LYS ALA HIS ARG GLY VAL TRP ASN LYS LEU ALA SEQRES 12 A 410 ALA GLY SER PHE GLU ALA ARG GLY LYS LYS LEU GLY ILE SEQRES 13 A 410 ILE GLY TYR GLY HIS ILE GLY THR GLN LEU GLY ILE LEU SEQRES 14 A 410 ALA GLU SER LEU GLY MET TYR VAL TYR PHE TYR ASP ILE SEQRES 15 A 410 GLU ASN LYS LEU PRO LEU GLY ASN ALA THR GLN VAL GLN SEQRES 16 A 410 HIS LEU SER ASP LEU LEU ASN MET SER ASP VAL VAL SER SEQRES 17 A 410 LEU HIS VAL PRO GLU ASN PRO SER THR LYS ASN MET MET SEQRES 18 A 410 GLY ALA LYS GLU ILE SER LEU MET LYS PRO GLY SER LEU SEQRES 19 A 410 LEU ILE ASN ALA SER ARG GLY THR VAL VAL ASP ILE PRO SEQRES 20 A 410 ALA LEU ALA ASP ALA LEU ALA SER LYS HIS LEU ALA GLY SEQRES 21 A 410 ALA ALA ILE ASP VAL PHE PRO THR GLU PRO ALA THR ASN SEQRES 22 A 410 SER ASP PRO PHE THR SER PRO LEU ALA GLU PHE ASP ASN SEQRES 23 A 410 VAL LEU LEU THR PRO HIS ILE GLY GLY SER THR GLN GLU SEQRES 24 A 410 ALA GLN GLU ASN ILE GLY LEU GLU VAL ALA GLY LYS LEU SEQRES 25 A 410 ILE LYS TYR SER ASP ASN GLY SER THR LEU SER ALA VAL SEQRES 26 A 410 ASN PHE PRO GLU VAL SER LEU PRO LEU HIS VAL VAL ARG SEQRES 27 A 410 ARG LEU MET HIS ILE HIS GLU ASN ARG PRO GLY VAL LEU SEQRES 28 A 410 THR ALA LEU ASN LYS ILE PHE ALA GLU GLN GLY VAL ASN SEQRES 29 A 410 ILE ALA ALA GLN TYR LEU GLN THR SER ALA GLN MET GLY SEQRES 30 A 410 TYR VAL VAL ILE ASP ILE GLU ALA ASP GLU ASP VAL ALA SEQRES 31 A 410 GLU LYS ALA LEU GLN ALA MET LYS ALA ILE PRO GLY THR SEQRES 32 A 410 ILE ARG ALA ARG LEU LEU TYR SEQRES 1 B 410 MET ALA LYS VAL SER LEU GLU LYS ASP LYS ILE LYS PHE SEQRES 2 B 410 LEU LEU VAL GLU GLY VAL HIS GLN LYS ALA LEU GLU SER SEQRES 3 B 410 LEU ARG ALA ALA GLY TYR THR ASN ILE GLU PHE HIS LYS SEQRES 4 B 410 GLY ALA LEU ASP ASP GLU GLN LEU LYS GLU SER ILE ARG SEQRES 5 B 410 ASP ALA HIS PHE ILE GLY LEU ARG SER ARG THR HIS LEU SEQRES 6 B 410 THR GLU ASP VAL ILE ASN ALA ALA GLU LYS LEU VAL ALA SEQRES 7 B 410 ILE GLY ALA PHE ALA ILE GLY THR ASN GLN VAL ASP LEU SEQRES 8 B 410 ASP ALA ALA ALA LYS ARG GLY ILE PRO VAL PHE ASN ALA SEQRES 9 B 410 PRO PHE SER ASN THR ARG SER VAL ALA GLU LEU VAL ILE SEQRES 10 B 410 GLY GLU LEU LEU LEU LEU LEU ARG GLY VAL PRO GLU ALA SEQRES 11 B 410 ASN ALA LYS ALA HIS ARG GLY VAL TRP ASN LYS LEU ALA SEQRES 12 B 410 ALA GLY SER PHE GLU ALA ARG GLY LYS LYS LEU GLY ILE SEQRES 13 B 410 ILE GLY TYR GLY HIS ILE GLY THR GLN LEU GLY ILE LEU SEQRES 14 B 410 ALA GLU SER LEU GLY MET TYR VAL TYR PHE TYR ASP ILE SEQRES 15 B 410 GLU ASN LYS LEU PRO LEU GLY ASN ALA THR GLN VAL GLN SEQRES 16 B 410 HIS LEU SER ASP LEU LEU ASN MET SER ASP VAL VAL SER SEQRES 17 B 410 LEU HIS VAL PRO GLU ASN PRO SER THR LYS ASN MET MET SEQRES 18 B 410 GLY ALA LYS GLU ILE SER LEU MET LYS PRO GLY SER LEU SEQRES 19 B 410 LEU ILE ASN ALA SER ARG GLY THR VAL VAL ASP ILE PRO SEQRES 20 B 410 ALA LEU ALA ASP ALA LEU ALA SER LYS HIS LEU ALA GLY SEQRES 21 B 410 ALA ALA ILE ASP VAL PHE PRO THR GLU PRO ALA THR ASN SEQRES 22 B 410 SER ASP PRO PHE THR SER PRO LEU ALA GLU PHE ASP ASN SEQRES 23 B 410 VAL LEU LEU THR PRO HIS ILE GLY GLY SER THR GLN GLU SEQRES 24 B 410 ALA GLN GLU ASN ILE GLY LEU GLU VAL ALA GLY LYS LEU SEQRES 25 B 410 ILE LYS TYR SER ASP ASN GLY SER THR LEU SER ALA VAL SEQRES 26 B 410 ASN PHE PRO GLU VAL SER LEU PRO LEU HIS VAL VAL ARG SEQRES 27 B 410 ARG LEU MET HIS ILE HIS GLU ASN ARG PRO GLY VAL LEU SEQRES 28 B 410 THR ALA LEU ASN LYS ILE PHE ALA GLU GLN GLY VAL ASN SEQRES 29 B 410 ILE ALA ALA GLN TYR LEU GLN THR SER ALA GLN MET GLY SEQRES 30 B 410 TYR VAL VAL ILE ASP ILE GLU ALA ASP GLU ASP VAL ALA SEQRES 31 B 410 GLU LYS ALA LEU GLN ALA MET LYS ALA ILE PRO GLY THR SEQRES 32 B 410 ILE ARG ALA ARG LEU LEU TYR HET NAI A 450 44 HET SER A 451 7 HET SER A 551 7 HET NAI B 550 44 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM SER SERINE HETSYN NAI NADH FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 4 SER 2(C3 H7 N O3) FORMUL 7 HOH *49(H2 O) HELIX 1 1 GLU A 7 LYS A 10 5 4 HELIX 2 2 HIS A 20 ALA A 29 1 10 HELIX 3 3 GLU A 45 ARG A 52 1 8 HELIX 4 4 THR A 66 ALA A 73 1 8 HELIX 5 5 ASP A 90 ARG A 97 1 8 HELIX 6 6 ASN A 108 GLY A 126 1 19 HELIX 7 7 GLY A 126 HIS A 135 1 10 HELIX 8 8 GLY A 160 LEU A 173 1 14 HELIX 9 9 HIS A 196 SER A 204 1 9 HELIX 10 10 GLY A 222 MET A 229 1 8 HELIX 11 11 ASP A 245 SER A 255 1 11 HELIX 12 12 SER A 279 PHE A 284 5 6 HELIX 13 13 THR A 297 GLY A 319 1 23 HELIX 14 14 GLY A 349 GLU A 360 1 12 HELIX 15 15 ASP A 386 ALA A 399 1 14 HELIX 16 16 HIS B 20 ALA B 29 1 10 HELIX 17 17 ASP B 43 ARG B 52 1 10 HELIX 18 18 THR B 66 ASN B 71 1 6 HELIX 19 19 ASP B 90 ARG B 97 1 8 HELIX 20 20 ASN B 108 ARG B 125 1 18 HELIX 21 21 GLY B 126 HIS B 135 1 10 HELIX 22 22 GLY B 160 SER B 172 1 13 HELIX 23 23 HIS B 196 SER B 204 1 9 HELIX 24 24 GLY B 222 LEU B 228 1 7 HELIX 25 25 ARG B 240 VAL B 244 5 5 HELIX 26 26 ASP B 245 SER B 255 1 11 HELIX 27 27 SER B 279 PHE B 284 5 6 HELIX 28 28 THR B 297 ASN B 318 1 22 HELIX 29 29 GLY B 349 GLU B 360 1 12 HELIX 30 30 ASP B 386 ALA B 399 1 14 SHEET 1 A 5 ASN A 34 PHE A 37 0 SHEET 2 A 5 LYS A 12 LEU A 15 1 N LEU A 15 O GLU A 36 SHEET 3 A 5 PHE A 56 LEU A 59 1 O GLY A 58 N LEU A 14 SHEET 4 A 5 ALA A 78 ALA A 81 1 O GLY A 80 N ILE A 57 SHEET 5 A 5 VAL A 101 PHE A 102 1 O PHE A 102 N ALA A 81 SHEET 1 B 6 TYR A 176 TYR A 180 0 SHEET 2 B 6 LYS A 153 ILE A 157 1 N ILE A 156 O TYR A 178 SHEET 3 B 6 VAL A 206 LEU A 209 1 O VAL A 206 N GLY A 155 SHEET 4 B 6 SER A 233 ASN A 237 1 O ILE A 236 N VAL A 207 SHEET 5 B 6 LEU A 258 ILE A 263 1 O ALA A 259 N SER A 233 SHEET 6 B 6 VAL A 287 LEU A 289 1 O LEU A 288 N ALA A 261 SHEET 1 C 8 THR A 403 TYR A 410 0 SHEET 2 C 8 ARG A 339 GLU A 345 -1 N ILE A 343 O ILE A 404 SHEET 3 C 8 MET A 376 GLU A 384 -1 O ILE A 381 N LEU A 340 SHEET 4 C 8 ASN A 364 THR A 372 -1 N ALA A 367 O ASP A 382 SHEET 5 C 8 ASN B 364 SER B 373 -1 O GLN B 368 N LEU A 370 SHEET 6 C 8 MET B 376 GLU B 384 -1 O MET B 376 N SER B 373 SHEET 7 C 8 ARG B 339 GLU B 345 -1 N LEU B 340 O ILE B 381 SHEET 8 C 8 THR B 403 TYR B 410 -1 O ARG B 405 N ILE B 343 SHEET 1 D 5 ILE B 35 PHE B 37 0 SHEET 2 D 5 PHE B 13 LEU B 15 1 N LEU B 15 O GLU B 36 SHEET 3 D 5 PHE B 56 LEU B 59 1 O GLY B 58 N LEU B 14 SHEET 4 D 5 ALA B 78 ALA B 81 1 O GLY B 80 N ILE B 57 SHEET 5 D 5 VAL B 101 PHE B 102 1 O PHE B 102 N ALA B 81 SHEET 1 E 7 THR B 192 GLN B 193 0 SHEET 2 E 7 TYR B 176 TYR B 180 1 N PHE B 179 O THR B 192 SHEET 3 E 7 LYS B 153 ILE B 157 1 N ILE B 156 O TYR B 178 SHEET 4 E 7 VAL B 206 LEU B 209 1 O VAL B 206 N GLY B 155 SHEET 5 E 7 LEU B 234 ASN B 237 1 O ILE B 236 N VAL B 207 SHEET 6 E 7 GLY B 260 ILE B 263 1 O ALA B 262 N ASN B 237 SHEET 7 E 7 VAL B 287 LEU B 289 1 O LEU B 288 N ALA B 261 CISPEP 1 VAL B 337 ARG B 338 0 8.44 SITE 1 AC1 21 ILE A 84 PHE A 106 TYR A 159 GLY A 160 SITE 2 AC1 21 HIS A 161 ILE A 162 TYR A 180 ASP A 181 SITE 3 AC1 21 ILE A 182 LYS A 185 HIS A 210 VAL A 211 SITE 4 AC1 21 PRO A 212 SER A 216 ALA A 238 SER A 239 SITE 5 AC1 21 ARG A 240 ASP A 264 HIS A 292 GLY A 294 SITE 6 AC1 21 GLY A 295 SITE 1 AC2 20 PHE B 106 ASN B 108 GLY B 160 HIS B 161 SITE 2 AC2 20 ILE B 162 ASP B 181 ILE B 182 LYS B 185 SITE 3 AC2 20 HIS B 210 VAL B 211 PRO B 212 SER B 216 SITE 4 AC2 20 THR B 217 MET B 220 ALA B 238 SER B 239 SITE 5 AC2 20 ARG B 240 ASP B 264 HIS B 292 GLY B 295 SITE 1 AC3 10 HIS A 344 ASN A 346 ARG A 347 GLY A 349 SITE 2 AC3 10 VAL A 350 LEU A 351 LEU A 370 HOH A 546 SITE 3 AC3 10 ASN B 364 ILE B 365 SITE 1 AC4 11 ASN A 364 ILE A 365 HOH A 517 HIS B 344 SITE 2 AC4 11 ASN B 346 ARG B 347 PRO B 348 GLY B 349 SITE 3 AC4 11 VAL B 350 LEU B 370 THR B 372 CRYST1 144.072 132.239 52.370 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019095 0.00000