HEADER HYDROLASE 27-MAR-07 2PAR TITLE CRYSTAL STRUCTURE OF THE 5'-DEOXYNUCLEOTIDASE YFBR MUTANT E72A TITLE 2 COMPLEXED WITH CO(2+) AND TMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-DEOXYNUCLEOTIDASE YFBR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOSIDE 5'-MONOPHOSPHATE PHOSPHOHYDROLASE, 5'- COMPND 5 DEOXYRIBONUCLEOTIDASE; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YFBR, B2291, JW2288; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-15B KEYWDS NUCLEOTIDASE, 5'-DEOXYNUCLEOTIDASE, YFBR, HD DOMAIN PHOSPHOHYDROLASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.ZIMMERMAN,M.PROUDFOOT,A.YAKUNIN,W.MINOR REVDAT 6 30-AUG-23 2PAR 1 REMARK REVDAT 5 13-APR-22 2PAR 1 AUTHOR JRNL REVDAT 4 20-OCT-21 2PAR 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2PAR 1 VERSN REVDAT 2 06-MAY-08 2PAR 1 JRNL VERSN REVDAT 1 04-MAR-08 2PAR 0 JRNL AUTH M.D.ZIMMERMAN,M.PROUDFOOT,A.YAKUNIN,W.MINOR JRNL TITL STRUCTURAL INSIGHT INTO THE MECHANISM OF SUBSTRATE JRNL TITL 2 SPECIFICITY AND CATALYTIC ACTIVITY OF AN HD-DOMAIN JRNL TITL 3 PHOSPHOHYDROLASE: THE 5'-DEOXYRIBONUCLEOTIDASE YFBR FROM JRNL TITL 4 ESCHERICHIA COLI. JRNL REF J.MOL.BIOL. V. 378 215 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18353368 JRNL DOI 10.1016/J.JMB.2008.02.036 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 21608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.277 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2840 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2605 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3847 ; 1.842 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6013 ; 0.932 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;31.212 ;24.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;15.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.153 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3133 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 562 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 677 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2590 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1368 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1662 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.320 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1805 ; 0.926 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 707 ; 0.276 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2808 ; 1.360 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1160 ; 2.406 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1039 ; 3.518 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 2 A 301 4 REMARK 3 2 B 2 B 301 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2645 ; 0.49 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2645 ; 0.74 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1777 -14.2150 -17.2498 REMARK 3 T TENSOR REMARK 3 T11: 0.2447 T22: 0.0927 REMARK 3 T33: -0.0201 T12: -0.0009 REMARK 3 T13: -0.0537 T23: 0.0560 REMARK 3 L TENSOR REMARK 3 L11: 11.3632 L22: 3.3582 REMARK 3 L33: 8.3110 L12: 3.0676 REMARK 3 L13: -2.5886 L23: -1.6072 REMARK 3 S TENSOR REMARK 3 S11: 0.1965 S12: 0.5902 S13: 0.2495 REMARK 3 S21: -0.4740 S22: 0.2119 S23: 0.2460 REMARK 3 S31: 0.1021 S32: -0.1921 S33: -0.4083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2547 -5.7731 2.2848 REMARK 3 T TENSOR REMARK 3 T11: 0.1062 T22: 0.0261 REMARK 3 T33: 0.0921 T12: -0.0185 REMARK 3 T13: -0.0275 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.7509 L22: 4.2484 REMARK 3 L33: 4.3893 L12: 1.0304 REMARK 3 L13: 1.5236 L23: 2.0394 REMARK 3 S TENSOR REMARK 3 S11: -0.1228 S12: 0.0351 S13: 0.4709 REMARK 3 S21: -0.0419 S22: -0.0084 S23: -0.0982 REMARK 3 S31: -0.2101 S32: 0.0122 S33: 0.1312 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7065 -25.6923 7.7668 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.1018 REMARK 3 T33: -0.0333 T12: -0.0361 REMARK 3 T13: 0.0233 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.8983 L22: 2.0621 REMARK 3 L33: 2.9038 L12: 0.8462 REMARK 3 L13: -0.5312 L23: -1.2150 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.1797 S13: -0.0125 REMARK 3 S21: 0.0956 S22: -0.0624 S23: 0.2174 REMARK 3 S31: 0.0365 S32: -0.1157 S33: 0.0888 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -26.0989 -7.4495 -4.4285 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.0846 REMARK 3 T33: 0.0971 T12: 0.0278 REMARK 3 T13: -0.0542 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.1414 L22: 4.1960 REMARK 3 L33: 0.1082 L12: 0.4122 REMARK 3 L13: 0.4390 L23: 0.3581 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: -0.0049 S13: 0.2112 REMARK 3 S21: -0.1037 S22: -0.0802 S23: 0.4953 REMARK 3 S31: -0.4322 S32: -0.1161 S33: 0.1076 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): -28.4227 -20.3701 -9.0982 REMARK 3 T TENSOR REMARK 3 T11: 0.1701 T22: 0.1050 REMARK 3 T33: 0.0264 T12: -0.0149 REMARK 3 T13: -0.0644 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 4.5376 L22: 2.7074 REMARK 3 L33: 1.0554 L12: 1.1784 REMARK 3 L13: -0.7239 L23: 1.2681 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: -0.0436 S13: 0.2568 REMARK 3 S21: -0.1822 S22: -0.0341 S23: 0.4271 REMARK 3 S31: 0.1929 S32: -0.0416 S33: 0.0573 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1152 -10.4617 15.2453 REMARK 3 T TENSOR REMARK 3 T11: 0.2013 T22: 0.1465 REMARK 3 T33: 0.0023 T12: -0.0072 REMARK 3 T13: 0.0058 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 4.3663 L22: 4.4347 REMARK 3 L33: 1.2596 L12: 3.0096 REMARK 3 L13: 0.7626 L23: 0.7651 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: -0.4118 S13: 0.3842 REMARK 3 S21: 0.3970 S22: -0.1544 S23: 0.2291 REMARK 3 S31: -0.1155 S32: -0.0904 S33: 0.0908 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9911 -20.5192 19.8071 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.1702 REMARK 3 T33: -0.0585 T12: -0.0179 REMARK 3 T13: 0.0089 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 4.6744 L22: 0.3585 REMARK 3 L33: 3.0197 L12: -0.7233 REMARK 3 L13: 0.3378 L23: 0.0292 REMARK 3 S TENSOR REMARK 3 S11: -0.1943 S12: -0.4781 S13: 0.0555 REMARK 3 S21: 0.5258 S22: 0.1066 S23: 0.1837 REMARK 3 S31: -0.3705 S32: 0.0358 S33: 0.0877 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 9 REMARK 3 ORIGIN FOR THE GROUP (A): -6.2833 -23.3754 17.1273 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.3036 REMARK 3 T33: -0.0464 T12: -0.0673 REMARK 3 T13: -0.0607 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.5465 L22: 10.7170 REMARK 3 L33: 6.3536 L12: 2.7440 REMARK 3 L13: -4.3899 L23: 1.7279 REMARK 3 S TENSOR REMARK 3 S11: 0.0885 S12: -0.7909 S13: -0.1765 REMARK 3 S21: 0.2301 S22: -0.0165 S23: 0.1232 REMARK 3 S31: -0.1522 S32: 1.3643 S33: -0.0720 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 28 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0894 -12.8866 -2.4736 REMARK 3 T TENSOR REMARK 3 T11: 0.0650 T22: 0.0822 REMARK 3 T33: 0.0662 T12: -0.0225 REMARK 3 T13: -0.0456 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.2028 L22: 5.7402 REMARK 3 L33: 6.1549 L12: 1.6147 REMARK 3 L13: -0.3683 L23: -2.1314 REMARK 3 S TENSOR REMARK 3 S11: 0.0894 S12: -0.0221 S13: 0.2825 REMARK 3 S21: 0.1396 S22: -0.0592 S23: -0.4947 REMARK 3 S31: -0.0759 S32: 0.2698 S33: -0.0302 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): -15.6539 -26.8310 -8.0049 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.0729 REMARK 3 T33: -0.0492 T12: -0.0509 REMARK 3 T13: -0.0241 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.6249 L22: 1.9463 REMARK 3 L33: 2.2340 L12: 0.9159 REMARK 3 L13: 0.3378 L23: 1.1231 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.1718 S13: -0.0755 REMARK 3 S21: -0.1036 S22: -0.0210 S23: 0.0761 REMARK 3 S31: 0.1969 S32: -0.1128 S33: 0.0402 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4258 -27.5308 2.3287 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1657 REMARK 3 T33: 0.0358 T12: -0.0119 REMARK 3 T13: -0.0189 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 1.6191 L22: 1.2968 REMARK 3 L33: 1.4494 L12: 0.7695 REMARK 3 L13: -1.2065 L23: 0.1425 REMARK 3 S TENSOR REMARK 3 S11: -0.1694 S12: -0.2799 S13: -0.3020 REMARK 3 S21: -0.0563 S22: 0.0116 S23: -0.2682 REMARK 3 S31: 0.0516 S32: 0.3634 S33: 0.1578 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7518 -33.8444 8.3044 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1284 REMARK 3 T33: 0.0307 T12: 0.0413 REMARK 3 T13: 0.0113 T23: 0.0848 REMARK 3 L TENSOR REMARK 3 L11: 0.5389 L22: 3.1211 REMARK 3 L33: 7.5543 L12: 1.0198 REMARK 3 L13: 0.4786 L23: 2.2820 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: -0.2605 S13: -0.1896 REMARK 3 S21: 0.2076 S22: 0.0583 S23: 0.0253 REMARK 3 S31: 0.2613 S32: 0.3329 S33: 0.0228 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 127 B 169 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0452 -20.3385 -15.4690 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.1444 REMARK 3 T33: -0.0252 T12: -0.0369 REMARK 3 T13: 0.0249 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.7997 L22: 3.0285 REMARK 3 L33: 0.9682 L12: 0.4449 REMARK 3 L13: -0.4408 L23: -0.4789 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: 0.2756 S13: -0.0077 REMARK 3 S21: -0.3774 S22: 0.0351 S23: -0.3313 REMARK 3 S31: 0.0783 S32: 0.0479 S33: 0.0307 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 170 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0258 -22.5613 -19.8205 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.1767 REMARK 3 T33: -0.0511 T12: -0.0771 REMARK 3 T13: -0.0319 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 3.3272 L22: 5.0603 REMARK 3 L33: 0.9334 L12: -1.0698 REMARK 3 L13: -0.4176 L23: 1.4119 REMARK 3 S TENSOR REMARK 3 S11: -0.2163 S12: 0.4321 S13: -0.0371 REMARK 3 S21: -0.5879 S22: 0.1482 S23: -0.0605 REMARK 3 S31: 0.0186 S32: 0.0070 S33: 0.0681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. COOT PROGRAM HAS ALSO BEEN USED IN THE REFINEMENT. REMARK 4 REMARK 4 2PAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042173. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : LN2 COOLED FIRST CRYSTAL, REMARK 200 SAGITAL FOCUSING 2ND CRYSTAL, REMARK 200 ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR, BEAM DEFINING SLITS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22238 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WPH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NH4 CITRATE, 0.8 % W/V NDSB 256, REMARK 280 5 % W/V PEG 3350, 1 % V/V GLYCEROL, PH 5.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.29908 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.47267 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 68.06800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 39.29908 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.47267 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 68.06800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 39.29908 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.47267 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.59816 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.94533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 78.59816 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.94533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 78.59816 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.94533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 81 REMARK 465 VAL A 82 REMARK 465 LYS A 83 REMARK 465 TYR A 84 REMARK 465 PHE A 85 REMARK 465 ASN A 86 REMARK 465 SER A 87 REMARK 465 GLN A 88 REMARK 465 ILE A 89 REMARK 465 ALA A 90 REMARK 465 GLN A 91 REMARK 465 LEU A 188 REMARK 465 SER A 189 REMARK 465 LEU A 190 REMARK 465 ASP A 191 REMARK 465 GLU A 192 REMARK 465 ILE A 193 REMARK 465 SER A 194 REMARK 465 GLN A 195 REMARK 465 ASP A 196 REMARK 465 SER A 197 REMARK 465 PRO A 198 REMARK 465 LEU A 199 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 VAL B 82 REMARK 465 LYS B 83 REMARK 465 TYR B 84 REMARK 465 PHE B 85 REMARK 465 ASN B 86 REMARK 465 SER B 87 REMARK 465 GLN B 88 REMARK 465 ILE B 89 REMARK 465 LEU B 188 REMARK 465 SER B 189 REMARK 465 LEU B 190 REMARK 465 ASP B 191 REMARK 465 GLU B 192 REMARK 465 ILE B 193 REMARK 465 SER B 194 REMARK 465 GLN B 195 REMARK 465 ASP B 196 REMARK 465 SER B 197 REMARK 465 PRO B 198 REMARK 465 LEU B 199 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 GLU A 92 CD OE1 OE2 REMARK 470 TYR A 93 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 98 CE NZ REMARK 470 LYS A 103 CE NZ REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LEU A 158 CG CD1 CD2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 HIS A 187 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 GLN B 91 CG CD OE1 NE2 REMARK 470 LYS B 94 CD CE NZ REMARK 470 LYS B 98 CD CE NZ REMARK 470 LYS B 103 CE NZ REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 LYS B 130 CE NZ REMARK 470 ARG B 162 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 171 NE CZ NH1 NH2 REMARK 470 GLU B 180 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 125 CZ TYR B 125 OH 0.118 REMARK 500 TYR B 125 CE2 TYR B 125 CD2 0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 26 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 55 48.37 -142.33 REMARK 500 SER A 185 -19.48 -47.56 REMARK 500 ASN B 55 40.12 -141.85 REMARK 500 LYS B 94 -38.66 -38.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 92 TYR A 93 146.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 NE2 REMARK 620 2 HIS A 68 NE2 97.3 REMARK 620 3 ASP A 69 OD2 92.0 80.7 REMARK 620 4 ASP A 137 OD1 88.0 94.3 174.9 REMARK 620 5 TMP A 301 O3P 90.3 171.8 96.1 88.9 REMARK 620 6 HOH A 407 O 171.1 90.1 84.3 96.4 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 33 NE2 REMARK 620 2 HIS B 68 NE2 93.4 REMARK 620 3 ASP B 69 OD2 89.2 82.3 REMARK 620 4 ASP B 137 OD1 89.5 90.4 172.5 REMARK 620 5 TMP B 301 O1P 88.2 175.1 93.1 94.2 REMARK 620 6 HOH B 313 O 170.6 95.7 89.6 92.9 82.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PAQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 5'-DEOXYNUCLEOTIDASE YFBR REMARK 900 RELATED ID: 2PAU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 5'-DEOXYNUCLEOTIDASE YFBR MUTANT E72A REMARK 900 COMPLEXED WITH CO(2+) AND DAMP DBREF 2PAR A 1 199 UNP P76491 YFBR_ECOLI 1 199 DBREF 2PAR B 1 199 UNP P76491 YFBR_ECOLI 1 199 SEQADV 2PAR GLY A -1 UNP P76491 EXPRESSION TAG SEQADV 2PAR HIS A 0 UNP P76491 EXPRESSION TAG SEQADV 2PAR ALA A 72 UNP P76491 GLU 72 ENGINEERED MUTATION SEQADV 2PAR GLY B -1 UNP P76491 EXPRESSION TAG SEQADV 2PAR HIS B 0 UNP P76491 EXPRESSION TAG SEQADV 2PAR ALA B 72 UNP P76491 GLU 72 ENGINEERED MUTATION SEQRES 1 A 201 GLY HIS MET LYS GLN SER HIS PHE PHE ALA HIS LEU SER SEQRES 2 A 201 ARG LEU LYS LEU ILE ASN ARG TRP PRO LEU MET ARG ASN SEQRES 3 A 201 VAL ARG THR GLU ASN VAL SER GLU HIS SER LEU GLN VAL SEQRES 4 A 201 ALA MET VAL ALA HIS ALA LEU ALA ALA ILE LYS ASN ARG SEQRES 5 A 201 LYS PHE GLY GLY ASN VAL ASN ALA GLU ARG ILE ALA LEU SEQRES 6 A 201 LEU ALA MET TYR HIS ASP ALA SER ALA VAL LEU THR GLY SEQRES 7 A 201 ASP LEU PRO THR PRO VAL LYS TYR PHE ASN SER GLN ILE SEQRES 8 A 201 ALA GLN GLU TYR LYS ALA ILE GLU LYS ILE ALA GLN GLN SEQRES 9 A 201 LYS LEU VAL ASP MET VAL PRO GLU GLU LEU ARG ASP ILE SEQRES 10 A 201 PHE ALA PRO LEU ILE ASP GLU HIS ALA TYR SER ASP GLU SEQRES 11 A 201 GLU LYS SER LEU VAL LYS GLN ALA ASP ALA LEU CYS ALA SEQRES 12 A 201 TYR LEU LYS CYS LEU GLU GLU LEU ALA ALA GLY ASN ASN SEQRES 13 A 201 GLU PHE LEU LEU ALA LYS THR ARG LEU GLU ALA THR LEU SEQRES 14 A 201 GLU ALA ARG ARG SER GLN GLU MET ASP TYR PHE MET GLU SEQRES 15 A 201 ILE PHE VAL PRO SER PHE HIS LEU SER LEU ASP GLU ILE SEQRES 16 A 201 SER GLN ASP SER PRO LEU SEQRES 1 B 201 GLY HIS MET LYS GLN SER HIS PHE PHE ALA HIS LEU SER SEQRES 2 B 201 ARG LEU LYS LEU ILE ASN ARG TRP PRO LEU MET ARG ASN SEQRES 3 B 201 VAL ARG THR GLU ASN VAL SER GLU HIS SER LEU GLN VAL SEQRES 4 B 201 ALA MET VAL ALA HIS ALA LEU ALA ALA ILE LYS ASN ARG SEQRES 5 B 201 LYS PHE GLY GLY ASN VAL ASN ALA GLU ARG ILE ALA LEU SEQRES 6 B 201 LEU ALA MET TYR HIS ASP ALA SER ALA VAL LEU THR GLY SEQRES 7 B 201 ASP LEU PRO THR PRO VAL LYS TYR PHE ASN SER GLN ILE SEQRES 8 B 201 ALA GLN GLU TYR LYS ALA ILE GLU LYS ILE ALA GLN GLN SEQRES 9 B 201 LYS LEU VAL ASP MET VAL PRO GLU GLU LEU ARG ASP ILE SEQRES 10 B 201 PHE ALA PRO LEU ILE ASP GLU HIS ALA TYR SER ASP GLU SEQRES 11 B 201 GLU LYS SER LEU VAL LYS GLN ALA ASP ALA LEU CYS ALA SEQRES 12 B 201 TYR LEU LYS CYS LEU GLU GLU LEU ALA ALA GLY ASN ASN SEQRES 13 B 201 GLU PHE LEU LEU ALA LYS THR ARG LEU GLU ALA THR LEU SEQRES 14 B 201 GLU ALA ARG ARG SER GLN GLU MET ASP TYR PHE MET GLU SEQRES 15 B 201 ILE PHE VAL PRO SER PHE HIS LEU SER LEU ASP GLU ILE SEQRES 16 B 201 SER GLN ASP SER PRO LEU HET CO A 201 1 HET TMP A 301 21 HET PEG A 401 7 HET CO B 201 1 HET TMP B 301 21 HETNAM CO COBALT (II) ION HETNAM TMP THYMIDINE-5'-PHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 CO 2(CO 2+) FORMUL 4 TMP 2(C10 H15 N2 O8 P) FORMUL 5 PEG C4 H10 O3 FORMUL 8 HOH *42(H2 O) HELIX 1 1 HIS A 5 SER A 11 1 7 HELIX 2 2 ARG A 12 ILE A 16 5 5 HELIX 3 3 ASN A 29 PHE A 52 1 24 HELIX 4 4 ASN A 57 TYR A 67 1 11 HELIX 5 5 HIS A 68 ALA A 70 5 3 HELIX 6 6 SER A 71 GLY A 76 1 6 HELIX 7 7 GLU A 92 VAL A 108 1 17 HELIX 8 8 PRO A 109 GLU A 111 5 3 HELIX 9 9 LEU A 112 ASP A 121 1 10 HELIX 10 10 SER A 126 ALA A 151 1 26 HELIX 11 11 ASN A 153 GLU A 155 5 3 HELIX 12 12 PHE A 156 ARG A 170 1 15 HELIX 13 13 SER A 172 PHE A 182 1 11 HELIX 14 14 VAL A 183 HIS A 187 5 5 HELIX 15 15 HIS B 5 ARG B 12 1 8 HELIX 16 16 LEU B 13 ILE B 16 5 4 HELIX 17 17 ASN B 29 PHE B 52 1 24 HELIX 18 18 ASN B 57 HIS B 68 1 12 HELIX 19 19 SER B 71 GLY B 76 1 6 HELIX 20 20 ALA B 90 VAL B 108 1 19 HELIX 21 21 PRO B 109 GLU B 111 5 3 HELIX 22 22 LEU B 112 ASP B 121 1 10 HELIX 23 23 GLU B 122 TYR B 125 5 4 HELIX 24 24 SER B 126 ALA B 151 1 26 HELIX 25 25 ASN B 153 GLU B 155 5 3 HELIX 26 26 PHE B 156 ARG B 170 1 15 HELIX 27 27 SER B 172 PHE B 182 1 11 LINK NE2 HIS A 33 CO CO A 201 1555 1555 2.19 LINK NE2 HIS A 68 CO CO A 201 1555 1555 2.13 LINK OD2 ASP A 69 CO CO A 201 1555 1555 2.19 LINK OD1 ASP A 137 CO CO A 201 1555 1555 1.97 LINK CO CO A 201 O3P TMP A 301 1555 1555 2.20 LINK CO CO A 201 O HOH A 407 1555 1555 1.95 LINK NE2 HIS B 33 CO CO B 201 1555 1555 2.10 LINK NE2 HIS B 68 CO CO B 201 1555 1555 2.20 LINK OD2 ASP B 69 CO CO B 201 1555 1555 2.29 LINK OD1 ASP B 137 CO CO B 201 1555 1555 2.09 LINK CO CO B 201 O1P TMP B 301 1555 1555 2.20 LINK CO CO B 201 O HOH B 313 1555 1555 2.26 SITE 1 AC1 5 HIS A 33 HIS A 68 ASP A 69 ASP A 137 SITE 2 AC1 5 HOH A 407 SITE 1 AC2 5 HIS B 33 HIS B 68 ASP B 69 ASP B 137 SITE 2 AC2 5 HOH B 313 SITE 1 AC3 12 ARG A 18 TRP A 19 HIS A 33 ASP A 69 SITE 2 AC3 12 ASP A 77 LEU A 78 THR A 80 ASP A 137 SITE 3 AC3 12 ALA A 141 LEU A 163 HOH A 407 HOH A 414 SITE 1 AC4 11 ARG B 18 TRP B 19 HIS B 33 ASP B 69 SITE 2 AC4 11 ASP B 77 PRO B 79 THR B 80 PRO B 81 SITE 3 AC4 11 ASP B 137 ALA B 141 HOH B 313 SITE 1 AC5 3 GLU A 122 TYR A 125 LYS A 134 CRYST1 136.136 136.136 55.418 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007350 0.004240 0.000000 0.00000 SCALE2 0.000000 0.008480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018050 0.00000