HEADER STRUCTURAL PROTEIN 28-MAR-07 2PBD TITLE TERNARY COMPLEX OF PROFILIN-ACTIN WITH THE POLY-PRO-GAB DOMAIN OF TITLE 2 VASP* COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-377; COMPND 5 SYNONYM: ALPHA-ACTIN-1; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROFILIN-1; COMPND 8 CHAIN: P; COMPND 9 FRAGMENT: RESIDUES 2-140; COMPND 10 SYNONYM: PROFILIN I; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: VASODILATOR-STIMULATED PHOSPHOPROTEIN; COMPND 14 CHAIN: V; COMPND 15 FRAGMENT: VASP LOADING POLY-PRO SITE AND GAB DOMAIN; COMPND 16 SYNONYM: VASP; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 OTHER_DETAILS: GENE ACTA1, ACTA; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 ORGAN: BRAIN; SOURCE 12 GENE: PFN1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PET29; SOURCE 18 MOL_ID: 3; SOURCE 19 SYNTHETIC: YES; SOURCE 20 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS, GENE VASP KEYWDS TERNARY COMPLEX; PROFILIN; ACTIN; VASP; POLY-PROLINE; LOADING POLY- KEYWDS 2 PRO SITE; GAB DOMAIN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.FERRON,G.REBOWSKI,R.DOMINGUEZ REVDAT 4 30-AUG-23 2PBD 1 REMARK SEQADV LINK REVDAT 3 06-MAR-13 2PBD 1 REMARK VERSN REVDAT 2 24-FEB-09 2PBD 1 VERSN REVDAT 1 13-NOV-07 2PBD 0 JRNL AUTH F.FERRON,G.REBOWSKI,S.H.LEE,R.DOMINGUEZ JRNL TITL STRUCTURAL BASIS FOR THE RECRUITMENT OF PROFILIN-ACTIN JRNL TITL 2 COMPLEXES DURING FILAMENT ELONGATION BY ENA/VASP JRNL REF EMBO J. V. 26 4597 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17914456 JRNL DOI 10.1038/SJ.EMBOJ.7601874 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 76665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3855 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1540 REMARK 3 BIN FREE R VALUE SET COUNT : 280 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 732 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 10.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.249 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4421 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6051 ; 1.695 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 6.447 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;34.582 ;23.956 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 777 ;13.356 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3348 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2267 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3089 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 563 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.133 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 90 ; 0.250 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 74 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2796 ; 1.138 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4469 ; 1.737 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1819 ; 2.788 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1547 ; 4.118 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 9 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 32 REMARK 3 RESIDUE RANGE : A 33 A 70 REMARK 3 RESIDUE RANGE : A 71 A 130 REMARK 3 RESIDUE RANGE : A 131 A 148 REMARK 3 RESIDUE RANGE : A 149 A 181 REMARK 3 RESIDUE RANGE : A 182 A 262 REMARK 3 RESIDUE RANGE : A 263 A 274 REMARK 3 RESIDUE RANGE : A 275 A 336 REMARK 3 RESIDUE RANGE : A 337 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5770 27.1260 23.0380 REMARK 3 T TENSOR REMARK 3 T11: -0.0381 T22: 0.0033 REMARK 3 T33: -0.0428 T12: 0.0082 REMARK 3 T13: -0.0162 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.2225 L22: 0.3522 REMARK 3 L33: 0.5614 L12: 0.0948 REMARK 3 L13: 0.1398 L23: 0.1081 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0034 S13: -0.0487 REMARK 3 S21: 0.0277 S22: 0.0141 S23: -0.0137 REMARK 3 S31: 0.0187 S32: 0.0572 S33: -0.0144 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 1 P 15 REMARK 3 RESIDUE RANGE : P 16 P 38 REMARK 3 RESIDUE RANGE : P 39 P 92 REMARK 3 RESIDUE RANGE : P 93 P 116 REMARK 3 RESIDUE RANGE : P 117 P 139 REMARK 3 ORIGIN FOR THE GROUP (A): -20.8380 32.7280 -5.2230 REMARK 3 T TENSOR REMARK 3 T11: -0.0464 T22: 0.0027 REMARK 3 T33: -0.0605 T12: 0.0043 REMARK 3 T13: -0.0161 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.5568 L22: 0.7773 REMARK 3 L33: 1.1252 L12: 0.0030 REMARK 3 L13: 0.1186 L23: 0.2279 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.0605 S13: 0.0314 REMARK 3 S21: -0.0419 S22: 0.0017 S23: -0.0012 REMARK 3 S31: -0.0056 S32: -0.0178 S33: 0.0098 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : V 202 V 206 REMARK 3 RESIDUE RANGE : V 207 V 212 REMARK 3 RESIDUE RANGE : V 223 V 231 REMARK 3 RESIDUE RANGE : V 232 V 238 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6130 23.6150 5.5150 REMARK 3 T TENSOR REMARK 3 T11: -0.0008 T22: -0.0007 REMARK 3 T33: -0.0349 T12: -0.0009 REMARK 3 T13: -0.0147 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.4587 L22: 0.1847 REMARK 3 L33: 4.2248 L12: 0.1216 REMARK 3 L13: 0.2680 L23: 0.8586 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: 0.0086 S13: -0.0533 REMARK 3 S21: -0.0390 S22: -0.0889 S23: 0.0589 REMARK 3 S31: -0.0384 S32: -0.0062 S33: 0.1759 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90020 REMARK 200 MONOCHROMATOR : BENT CONICAL SI-MIRROR (RH REMARK 200 COATED) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75393 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 41.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29300 REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 FOR SHELL : 9.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PAV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150MM DL-MALIC ACID PH 7.0, 18% PEG REMARK 280 3350, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.54700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.29450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.54700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.29450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1200 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 CYS A 0 REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 41 REMARK 465 GLY A 42 REMARK 465 VAL A 43 REMARK 465 MET A 44 REMARK 465 VAL A 45 REMARK 465 GLY A 46 REMARK 465 MET A 47 REMARK 465 GLY A 48 REMARK 465 GLN A 49 REMARK 465 LYS A 50 REMARK 465 ASP A 51 REMARK 465 GLN V 213 REMARK 465 GLY V 214 REMARK 465 PRO V 215 REMARK 465 GLY V 216 REMARK 465 GLY V 217 REMARK 465 GLY V 218 REMARK 465 GLY V 219 REMARK 465 ALA V 220 REMARK 465 GLY V 221 REMARK 465 LYS V 239 REMARK 465 GLN V 240 REMARK 465 GLU V 241 REMARK 465 GLU V 242 REMARK 465 ALA V 243 REMARK 465 SER V 244 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS A 10 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 37 OD1 ASP A 81 2.15 REMARK 500 O HOH A 1106 O HOH A 1458 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP P 80 O HOH A 1209 2555 2.15 REMARK 500 OD2 ASP P 80 O HOH A 1216 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 39 -45.09 104.14 REMARK 500 ASP A 179 41.66 -85.76 REMARK 500 ALA A 181 -151.10 -152.03 REMARK 500 ASP P 26 -66.80 67.58 REMARK 500 ASP P 26 -68.07 68.37 REMARK 500 SER P 29 167.32 179.48 REMARK 500 LYS P 37 -143.83 -101.84 REMARK 500 ASN P 61 28.28 -161.97 REMARK 500 ASN P 61 62.73 -161.52 REMARK 500 ASP P 80 84.44 10.42 REMARK 500 THR P 105 -163.12 -106.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN P 79 ASP P 80 112.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A1001 O2G REMARK 620 2 ATP A1001 O2B 76.9 REMARK 620 3 HOH A1021 O 127.0 93.2 REMARK 620 4 HOH A1052 O 69.9 96.7 59.7 REMARK 620 5 HOH A1063 O 96.9 173.8 89.9 80.1 REMARK 620 6 HOH A1117 O 148.1 81.0 76.6 136.1 105.0 REMARK 620 7 HOH A1470 O 82.0 98.7 150.6 143.7 81.1 78.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PAV RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF PROFILIN ACTIN AND VASP LOADING POLY-PRO SITE DBREF 2PBD A -1 375 UNP P68135 ACTS_RABIT 1 377 DBREF 2PBD P 1 139 UNP P07737 PROF1_HUMAN 2 140 DBREF 2PBD V 202 244 UNP P50552 VASP_HUMAN 203 245 SEQADV 2PBD HIC A 73 UNP P68135 HIS 75 MODIFIED RESIDUE SEQRES 1 A 377 MET CYS ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP SEQRES 2 A 377 ASN GLY SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP SEQRES 3 A 377 ASP ALA PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG SEQRES 4 A 377 PRO ARG HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS SEQRES 5 A 377 ASP SER TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY SEQRES 6 A 377 ILE LEU THR LEU LYS TYR PRO ILE GLU HIC GLY ILE ILE SEQRES 7 A 377 THR ASN TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR SEQRES 8 A 377 PHE TYR ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO SEQRES 9 A 377 THR LEU LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN SEQRES 10 A 377 ARG GLU LYS MET THR GLN ILE MET PHE GLU THR PHE ASN SEQRES 11 A 377 VAL PRO ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER SEQRES 12 A 377 LEU TYR ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SEQRES 13 A 377 SER GLY ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU SEQRES 14 A 377 GLY TYR ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU SEQRES 15 A 377 ALA GLY ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU SEQRES 16 A 377 THR GLU ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG SEQRES 17 A 377 GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL SEQRES 18 A 377 ALA LEU ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SEQRES 19 A 377 SER SER SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY SEQRES 20 A 377 GLN VAL ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO SEQRES 21 A 377 GLU THR LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER SEQRES 22 A 377 ALA GLY ILE HIS GLU THR THR TYR ASN SER ILE MET LYS SEQRES 23 A 377 CYS ASP ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN SEQRES 24 A 377 VAL MET SER GLY GLY THR THR MET TYR PRO GLY ILE ALA SEQRES 25 A 377 ASP ARG MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER SEQRES 26 A 377 THR MET LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS SEQRES 27 A 377 TYR SER VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SEQRES 28 A 377 SER THR PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR SEQRES 29 A 377 ASP GLU ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 P 139 ALA GLY TRP ASN ALA TYR ILE ASP ASN LEU MET ALA ASP SEQRES 2 P 139 GLY THR CYS GLN ASP ALA ALA ILE VAL GLY TYR LYS ASP SEQRES 3 P 139 SER PRO SER VAL TRP ALA ALA VAL PRO GLY LYS THR PHE SEQRES 4 P 139 VAL ASN ILE THR PRO ALA GLU VAL GLY VAL LEU VAL GLY SEQRES 5 P 139 LYS ASP ARG SER SER PHE TYR VAL ASN GLY LEU THR LEU SEQRES 6 P 139 GLY GLY GLN LYS CYS SER VAL ILE ARG ASP SER LEU LEU SEQRES 7 P 139 GLN ASP GLY GLU PHE SER MET ASP LEU ARG THR LYS SER SEQRES 8 P 139 THR GLY GLY ALA PRO THR PHE ASN VAL THR VAL THR LYS SEQRES 9 P 139 THR ASP LYS THR LEU VAL LEU LEU MET GLY LYS GLU GLY SEQRES 10 P 139 VAL HIS GLY GLY LEU ILE ASN LYS LYS CYS TYR GLU MET SEQRES 11 P 139 ALA SER HIS LEU ARG ARG SER GLN TYR SEQRES 1 V 43 GLY PRO PRO PRO ALA PRO PRO LEU PRO ALA ALA GLN GLY SEQRES 2 V 43 PRO GLY GLY GLY GLY ALA GLY ALA PRO GLY LEU ALA ALA SEQRES 3 V 43 ALA ILE ALA GLY ALA LYS LEU ARG LYS VAL SER LYS GLN SEQRES 4 V 43 GLU GLU ALA SER MODRES 2PBD HIC A 73 HIS 4-METHYL-HISTIDINE HET HIC A 73 11 HET CA A1002 1 HET ATP A1001 31 HETNAM HIC 4-METHYL-HISTIDINE HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 1 HIC C7 H11 N3 O2 FORMUL 4 CA CA 2+ FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 HOH *732(H2 O) HELIX 1 1 GLY A 55 LYS A 61 1 7 HELIX 2 2 ARG A 62 LEU A 65 5 4 HELIX 3 3 ASN A 78 ASN A 92 1 15 HELIX 4 4 ALA A 97 HIS A 101 5 5 HELIX 5 5 PRO A 112 THR A 126 1 15 HELIX 6 6 GLN A 137 SER A 145 1 9 HELIX 7 7 PRO A 172 ILE A 175 5 4 HELIX 8 8 ALA A 181 GLY A 197 1 17 HELIX 9 9 THR A 202 CYS A 217 1 16 HELIX 10 10 ASP A 222 ALA A 230 1 9 HELIX 11 11 ALA A 231 SER A 233 5 3 HELIX 12 12 ASN A 252 THR A 260 1 9 HELIX 13 13 LEU A 261 PHE A 262 5 2 HELIX 14 14 GLN A 263 GLY A 268 5 6 HELIX 15 15 GLY A 273 LYS A 284 1 12 HELIX 16 16 CYS A 285 ASP A 288 5 4 HELIX 17 17 ILE A 289 ALA A 295 1 7 HELIX 18 18 GLY A 301 MET A 305 5 5 HELIX 19 19 GLY A 308 ALA A 321 1 14 HELIX 20 20 PRO A 322 MET A 325 5 4 HELIX 21 21 TYR A 337 LEU A 349 1 13 HELIX 22 22 SER A 350 GLN A 353 5 4 HELIX 23 23 LYS A 359 GLY A 366 1 8 HELIX 24 24 SER A 368 CYS A 374 1 7 HELIX 25 25 TRP P 3 ALA P 12 1 10 HELIX 26 26 THR P 38 ILE P 42 5 5 HELIX 27 27 THR P 43 GLY P 52 1 10 HELIX 28 28 SER P 56 VAL P 60 5 5 HELIX 29 29 HIS P 119 SER P 137 1 19 HELIX 30 30 GLY V 224 GLY V 231 1 8 SHEET 1 A 6 ALA A 29 PRO A 32 0 SHEET 2 A 6 LEU A 16 PHE A 21 -1 N VAL A 17 O PHE A 31 SHEET 3 A 6 LEU A 8 ASN A 12 -1 N ASP A 11 O LYS A 18 SHEET 4 A 6 THR A 103 GLU A 107 1 O LEU A 104 N LEU A 8 SHEET 5 A 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 A 6 ILE A 357 THR A 358 -1 O ILE A 357 N MET A 132 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 ARG A 37 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 THR A 66 LYS A 68 -1 O LYS A 68 N VAL A 35 SHEET 1 C 2 ILE A 71 GLU A 72 0 SHEET 2 C 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 D 3 TYR A 169 ALA A 170 0 SHEET 2 D 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 D 3 MET A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 E 4 TYR A 169 ALA A 170 0 SHEET 2 E 4 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 4 GLY A 150 SER A 155 -1 N ASP A 154 O HIS A 161 SHEET 4 E 4 ASN A 297 SER A 300 1 O VAL A 298 N ILE A 151 SHEET 1 F 2 LYS A 238 GLU A 241 0 SHEET 2 F 2 VAL A 247 ILE A 250 -1 O ILE A 250 N LYS A 238 SHEET 1 G 7 SER P 29 ALA P 33 0 SHEET 2 G 7 CYS P 16 GLY P 23 -1 N ILE P 21 O ALA P 32 SHEET 3 G 7 THR P 108 GLY P 114 -1 O LEU P 109 N VAL P 22 SHEET 4 G 7 ASN P 99 LYS P 104 -1 N ASN P 99 O GLY P 114 SHEET 5 G 7 SER P 84 THR P 89 -1 N LEU P 87 O VAL P 100 SHEET 6 G 7 GLN P 68 SER P 76 -1 N SER P 71 O ARG P 88 SHEET 7 G 7 LEU P 63 LEU P 65 -1 N LEU P 63 O CYS P 70 LINK C GLU A 72 N HIC A 73 1555 1555 1.34 LINK C HIC A 73 N GLY A 74 1555 1555 1.33 LINK O2G ATP A1001 CA CA A1002 1555 1555 2.28 LINK O2B ATP A1001 CA CA A1002 1555 1555 2.33 LINK CA CA A1002 O HOH A1021 1555 1555 2.30 LINK CA CA A1002 O HOH A1052 1555 1555 2.96 LINK CA CA A1002 O HOH A1063 1555 1555 2.25 LINK CA CA A1002 O HOH A1117 1555 1555 2.56 LINK CA CA A1002 O HOH A1470 1555 1555 2.52 CISPEP 1 PRO A 38 ARG A 39 0 25.76 CISPEP 2 VAL V 237 SER V 238 0 -2.92 SITE 1 AC1 6 ATP A1001 HOH A1021 HOH A1052 HOH A1063 SITE 2 AC1 6 HOH A1117 HOH A1470 SITE 1 AC2 31 GLY A 13 SER A 14 GLY A 15 LEU A 16 SITE 2 AC2 31 LYS A 18 GLY A 156 ASP A 157 GLY A 158 SITE 3 AC2 31 VAL A 159 GLY A 182 ARG A 210 LYS A 213 SITE 4 AC2 31 GLU A 214 GLY A 301 GLY A 302 THR A 303 SITE 5 AC2 31 MET A 305 TYR A 306 LYS A 336 CA A1002 SITE 6 AC2 31 HOH A1003 HOH A1052 HOH A1071 HOH A1086 SITE 7 AC2 31 HOH A1132 HOH A1183 HOH A1256 HOH A1375 SITE 8 AC2 31 HOH A1450 HOH A1463 HOH A1470 CRYST1 119.094 56.589 75.227 90.00 104.75 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008397 0.000000 0.002211 0.00000 SCALE2 0.000000 0.017671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013746 0.00000